Wall clock time and date at job start Tue Mar 31 2020 05:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.35396 * 126.51695 * 2 1 4 4 N 1.30828 * 108.78667 * 179.97438 * 3 2 1 5 5 C 1.33370 * 109.13685 * 359.97438 * 4 3 2 6 6 C 1.35250 * 107.94210 * 0.07245 * 5 4 3 7 7 C 1.50696 * 123.49278 * 179.87793 * 6 5 4 8 8 C 1.53548 * 107.83391 * 344.25016 * 7 6 5 9 9 N 1.46948 * 109.58142 * 48.91667 * 8 7 6 10 10 C 1.46901 * 111.00082 * 164.39304 * 9 8 7 11 11 C 1.53007 * 109.46971 * 190.65894 * 10 9 8 12 12 H 1.09000 * 109.46897 * 305.00533 * 11 10 9 13 13 O 1.42894 * 109.46721 * 65.00095 * 11 10 9 14 14 C 1.52998 * 109.46793 * 184.99942 * 11 10 9 15 15 O 1.42911 * 109.46670 * 175.00115 * 14 11 10 16 16 C 1.35675 * 116.99567 * 180.02562 * 15 14 11 17 17 C 1.39314 * 119.81564 * 180.02562 * 16 15 14 18 18 C 1.36436 * 120.18679 * 180.27303 * 17 16 15 19 19 C 1.40839 * 119.80658 * 359.49986 * 18 17 16 20 20 C 1.41214 * 120.17523 * 180.22651 * 19 18 17 21 21 H 1.07998 * 120.00106 * 205.15988 * 20 19 18 22 22 C 1.39900 * 119.99897 * 25.16786 * 20 19 18 23 23 N 1.30877 * 119.99964 * 17.95935 * 22 20 19 24 24 Si 1.86804 * 119.99799 * 197.96847 * 22 20 19 25 25 H 1.48497 * 109.47499 * 94.50679 * 24 22 20 26 26 H 1.48498 * 109.46920 * 214.51003 * 24 22 20 27 27 H 1.48503 * 109.46747 * 334.50589 * 24 22 20 28 28 C 1.40833 * 119.64336 * 0.49469 * 19 18 17 29 29 C 1.36433 * 119.80947 * 359.75507 * 28 19 18 30 30 C 1.47279 * 111.51184 * 288.72017 * 9 8 7 31 31 H 1.08997 * 109.46964 * 269.97403 * 1 2 3 32 32 H 1.08999 * 109.47025 * 29.97203 * 1 2 3 33 33 H 1.08996 * 109.46539 * 149.96959 * 1 2 3 34 34 H 1.08002 * 125.61101 * 359.97438 * 3 2 1 35 35 H 1.09007 * 109.78505 * 103.85101 * 7 6 5 36 36 H 1.09000 * 109.78880 * 224.62047 * 7 6 5 37 37 H 1.08996 * 109.46055 * 288.87622 * 8 7 6 38 38 H 1.09007 * 109.45003 * 168.94537 * 8 7 6 39 39 H 1.09000 * 109.46932 * 70.66137 * 10 9 8 40 40 H 1.08990 * 109.47216 * 310.65976 * 10 9 8 41 41 H 0.96704 * 114.00200 * 60.00425 * 13 11 10 42 42 H 1.08998 * 109.47240 * 55.00993 * 14 11 10 43 43 H 1.08997 * 109.47367 * 294.99644 * 14 11 10 44 44 H 1.08005 * 119.90322 * 359.97438 * 17 16 15 45 45 H 1.07997 * 120.09477 * 179.72057 * 18 17 16 46 46 H 0.97003 * 119.99637 * 180.02562 * 23 22 20 47 47 H 1.08001 * 120.08913 * 179.73279 * 28 19 18 48 48 H 1.08003 * 119.90178 * 179.97438 * 29 28 19 49 49 H 1.08991 * 109.70140 * 171.09581 * 30 9 8 50 50 H 1.09008 * 109.69651 * 291.65482 * 30 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2707 1.0881 0.0000 4 7 3.5169 0.6897 0.0006 5 6 3.5496 -0.6436 0.0015 6 6 2.2735 -1.0917 -0.0001 7 6 1.9052 -2.5529 -0.0024 8 6 3.1548 -3.3522 -0.3992 9 7 4.3012 -2.9047 0.4038 10 6 5.4057 -3.8703 0.3284 11 6 6.4665 -3.5142 1.3720 12 1 6.7824 -2.4805 1.2309 13 8 5.9170 -3.6698 2.6819 14 6 7.6720 -4.4425 1.2110 15 8 8.7089 -4.0363 2.1067 16 6 9.8562 -4.7603 2.0895 17 6 10.9053 -4.4161 2.9391 18 6 12.0644 -5.1355 2.9242 19 6 12.1946 -6.2354 2.0542 20 6 13.3891 -6.9884 2.0358 21 1 13.6668 -7.5388 1.1491 22 6 14.2126 -7.0215 3.1662 23 7 13.7370 -6.6668 4.3328 24 14 15.9909 -7.5718 3.0105 25 1 16.8633 -6.3831 2.8340 26 1 16.3923 -8.3024 4.2394 27 1 16.1306 -8.4674 1.8342 28 6 11.1292 -6.5767 1.1987 29 6 9.9788 -5.8437 1.2224 30 6 4.7481 -1.5594 0.0043 31 1 -0.3633 -0.0005 1.0276 32 1 -0.3633 0.8902 -0.5134 33 1 -0.3632 -0.8897 -0.5143 34 1 1.9393 2.1160 -0.0004 35 1 1.5762 -2.8521 0.9929 36 1 1.1077 -2.7314 -0.7237 37 1 3.3675 -3.1924 -1.4562 38 1 2.9789 -4.4131 -0.2211 39 1 5.8496 -3.8377 -0.6666 40 1 5.0258 -4.8729 0.5241 41 1 5.6143 -4.5671 2.8774 42 1 8.0368 -4.3898 0.1853 43 1 7.3753 -5.4662 1.4392 44 1 10.8025 -3.5743 3.6079 45 1 12.8784 -4.8646 3.5802 46 1 14.3082 -6.6894 5.1166 47 1 11.2229 -7.4161 0.5255 48 1 9.1610 -6.1039 0.5667 49 1 5.4892 -1.1925 0.7144 50 1 5.1838 -1.5983 -0.9942 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069653146.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:36 Heat of formation + Delta-G solvation = -16.273210 kcal Electronic energy + Delta-G solvation = -30534.590553 eV Core-core repulsion = 26334.123452 eV Total energy + Delta-G solvation = -4200.467101 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 357.184 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -43.23630 -40.67645 -39.56801 -38.26290 -37.18991 -35.19685 -35.16556 -33.43881 -31.88323 -31.08964 -30.71117 -30.38139 -28.20903 -27.11772 -26.31718 -25.12747 -23.60471 -22.87889 -22.37938 -22.07018 -21.77510 -19.93356 -19.24209 -18.70336 -17.96314 -17.61150 -17.24157 -17.04690 -16.98514 -16.26041 -16.25729 -15.81044 -15.72015 -15.53680 -15.22185 -14.86314 -14.84794 -14.52630 -14.33901 -14.06902 -14.02981 -13.91868 -13.68005 -13.46557 -13.37634 -13.11045 -12.95613 -12.80802 -12.66044 -12.59349 -12.50284 -12.38159 -12.21047 -11.82018 -11.66423 -11.56558 -11.20936 -10.94176 -10.88041 -10.80316 -10.50240 -9.55365 -9.33408 -9.04988 -8.91076 -8.58537 -6.21902 0.95817 1.03543 1.06441 1.40342 1.53202 1.53972 1.91304 2.08023 2.23513 2.34457 2.73604 2.90447 3.53103 3.57923 3.71278 3.73876 3.88115 3.94553 3.99677 4.04793 4.08712 4.25235 4.28447 4.30710 4.37515 4.40236 4.43176 4.47624 4.48945 4.56930 4.65299 4.68609 4.72159 4.82478 4.87007 4.91369 5.04321 5.06108 5.08744 5.22760 5.29299 5.39720 5.59671 5.65253 5.70748 5.89327 5.95152 6.06864 6.08617 6.27122 6.33867 6.57837 6.82242 6.94807 6.96083 7.11924 7.13828 8.38360 Molecular weight = 357.18amu Principal moments of inertia in cm(-1) A = 0.033614 B = 0.001505 C = 0.001482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.798243 B =18599.238026 C =18892.516826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.451 5.451 3 C 0.167 3.833 4 N -0.532 5.532 5 C -0.039 4.039 6 C -0.020 4.020 7 C -0.029 4.029 8 C 0.059 3.941 9 N -0.536 5.536 10 C 0.039 3.961 11 C 0.122 3.878 12 H 0.084 0.916 13 O -0.560 6.560 14 C 0.030 3.970 15 O -0.333 6.333 16 C 0.001 3.999 17 C -0.137 4.137 18 C -0.152 4.152 19 C 0.054 3.946 20 C -0.500 4.500 21 H 0.077 0.923 22 C 0.033 3.967 23 N -0.833 5.833 24 Si 0.982 3.018 25 H -0.264 1.264 26 H -0.269 1.269 27 H -0.257 1.257 28 C -0.206 4.206 29 C -0.164 4.164 30 C 0.145 3.855 31 H 0.087 0.913 32 H 0.111 0.889 33 H 0.100 0.900 34 H 0.238 0.762 35 H 0.088 0.912 36 H 0.104 0.896 37 H 0.040 0.960 38 H 0.110 0.890 39 H 0.059 0.941 40 H 0.112 0.888 41 H 0.384 0.616 42 H 0.070 0.930 43 H 0.071 0.929 44 H 0.103 0.897 45 H 0.107 0.893 46 H 0.287 0.713 47 H 0.108 0.892 48 H 0.132 0.868 49 H 0.067 0.933 50 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.585 7.456 -10.759 32.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.132 5.132 3 C -0.114 4.114 4 N -0.251 5.251 5 C -0.169 4.169 6 C -0.138 4.138 7 C -0.067 4.067 8 C -0.069 4.069 9 N -0.260 5.260 10 C -0.089 4.089 11 C 0.062 3.938 12 H 0.101 0.899 13 O -0.367 6.367 14 C -0.046 4.046 15 O -0.249 6.249 16 C -0.043 4.043 17 C -0.155 4.155 18 C -0.171 4.171 19 C 0.052 3.948 20 C -0.530 4.530 21 H 0.095 0.905 22 C -0.181 4.181 23 N -0.460 5.460 24 Si 0.803 3.197 25 H -0.189 1.189 26 H -0.194 1.194 27 H -0.180 1.180 28 C -0.225 4.225 29 C -0.183 4.183 30 C 0.017 3.983 31 H 0.105 0.895 32 H 0.129 0.871 33 H 0.118 0.882 34 H 0.254 0.746 35 H 0.106 0.894 36 H 0.122 0.878 37 H 0.058 0.942 38 H 0.128 0.872 39 H 0.077 0.923 40 H 0.130 0.870 41 H 0.233 0.767 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.121 0.879 45 H 0.125 0.875 46 H 0.097 0.903 47 H 0.126 0.874 48 H 0.150 0.850 49 H 0.085 0.915 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -29.103 8.808 -9.883 31.973 hybrid contribution 0.640 -1.020 -0.638 1.363 sum -28.463 7.788 -10.522 31.329 Atomic orbital electron populations 1.22396 0.73584 1.06593 1.04957 1.45201 1.09154 1.05714 1.53107 1.25654 0.84443 0.94947 1.06381 1.69759 1.22032 1.12250 1.21035 1.20525 0.94635 0.90638 1.11058 1.21286 0.90622 0.91973 1.09913 1.20248 0.98151 0.84811 1.03539 1.22228 0.89239 1.00495 0.94921 1.61699 1.07569 1.00860 1.55915 1.22653 0.91252 0.97175 0.97791 1.21797 0.89214 0.99033 0.83718 0.89853 1.86628 1.82225 1.35894 1.31940 1.23512 0.87883 0.99431 0.93758 1.85895 1.22978 1.54781 1.61266 1.18701 0.87571 0.96429 1.01552 1.20008 0.93382 1.01561 1.00596 1.20864 0.96975 0.96337 1.02945 1.17963 0.93245 0.91619 0.92012 1.19722 1.05232 1.28013 0.99989 0.90483 1.26746 1.04395 0.93182 0.93744 1.69901 1.38433 1.37468 1.00154 0.85191 0.76364 0.79082 0.79037 1.18935 1.19388 1.18043 1.20818 0.94012 1.02284 1.05400 1.20711 0.99246 0.97104 1.01196 1.20173 0.92737 0.86917 0.98503 0.89454 0.87074 0.88164 0.74611 0.89390 0.87821 0.94156 0.87161 0.92306 0.87016 0.76721 0.91222 0.91086 0.87861 0.87492 0.90262 0.87412 0.85000 0.91478 0.93742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.22 11.08 127.77 1.42 1.63 16 2 N -0.45 -6.45 3.14 -537.68 -1.69 -8.14 16 3 C 0.17 3.01 12.58 180.05 2.27 5.28 16 4 N -0.53 -14.53 11.24 -187.78 -2.11 -16.64 16 5 C -0.04 -1.00 7.09 41.68 0.30 -0.70 16 6 C -0.02 -0.38 6.80 41.25 0.28 -0.10 16 7 C -0.03 -0.34 6.26 30.03 0.19 -0.15 16 8 C 0.06 0.75 5.53 86.48 0.48 1.23 16 9 N -0.54 -10.32 4.56 -898.23 -4.10 -14.42 16 10 C 0.04 0.68 4.60 86.31 0.40 1.07 16 11 C 0.12 3.08 3.20 30.60 0.10 3.18 16 12 H 0.08 2.47 6.44 -2.39 -0.02 2.45 16 13 O -0.56 -15.69 13.25 -144.34 -1.91 -17.60 16 14 C 0.03 0.88 4.37 71.98 0.31 1.19 16 15 O -0.33 -13.73 10.09 -85.28 -0.86 -14.59 16 16 C 0.00 0.06 6.71 22.79 0.15 0.22 16 17 C -0.14 -6.98 9.92 22.11 0.22 -6.76 16 18 C -0.15 -8.38 8.64 22.49 0.19 -8.19 16 19 C 0.05 2.98 5.57 -21.28 -0.12 2.86 16 20 C -0.50 -27.42 9.04 23.40 0.21 -27.21 16 21 H 0.08 4.05 7.91 -2.91 -0.02 4.02 16 22 C 0.03 1.71 5.13 85.24 0.44 2.14 16 23 N -0.83 -44.92 11.00 21.82 0.24 -44.68 16 24 Si 0.98 39.05 29.60 68.60 2.03 41.08 16 25 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 26 H -0.27 -10.19 7.11 99.48 0.71 -9.49 16 27 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 28 C -0.21 -10.12 9.74 22.48 0.22 -9.90 16 29 C -0.16 -7.21 8.96 22.11 0.20 -7.01 16 30 C 0.15 3.58 5.47 85.53 0.47 4.04 16 31 H 0.09 0.18 8.14 -2.39 -0.02 0.16 16 32 H 0.11 -0.12 8.14 -2.39 -0.02 -0.14 16 33 H 0.10 0.04 7.91 -2.39 -0.02 0.02 16 34 H 0.24 2.18 8.06 -2.91 -0.02 2.15 16 35 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 36 H 0.10 0.60 8.01 -2.39 -0.02 0.58 16 37 H 0.04 0.52 8.07 -2.39 -0.02 0.50 16 38 H 0.11 0.86 7.81 -2.38 -0.02 0.85 16 39 H 0.06 0.92 8.09 -2.39 -0.02 0.90 16 40 H 0.11 1.35 7.85 -2.39 -0.02 1.33 16 41 H 0.38 7.68 9.05 -74.05 -0.67 7.01 16 42 H 0.07 1.84 7.64 -2.39 -0.02 1.83 16 43 H 0.07 1.82 7.65 -2.39 -0.02 1.80 16 44 H 0.10 4.99 8.06 -2.91 -0.02 4.97 16 45 H 0.11 6.15 6.21 -2.91 -0.02 6.13 16 46 H 0.29 14.01 8.30 -92.71 -0.77 13.24 16 47 H 0.11 4.88 8.06 -2.91 -0.02 4.86 16 48 H 0.13 4.66 6.27 -2.91 -0.02 4.64 16 49 H 0.07 1.97 6.61 -2.39 -0.02 1.95 16 50 H 0.04 1.06 8.11 -2.38 -0.02 1.04 16 Total: -1.00 -78.67 405.40 -0.39 -79.06 By element: Atomic # 1 Polarization: 32.83 SS G_CDS: 0.29 Total: 33.12 kcal Atomic # 6 Polarization: -44.90 SS G_CDS: 7.71 Total: -37.18 kcal Atomic # 7 Polarization: -76.22 SS G_CDS: -7.65 Total: -83.87 kcal Atomic # 8 Polarization: -29.42 SS G_CDS: -2.77 Total: -32.20 kcal Atomic # 14 Polarization: 39.05 SS G_CDS: 2.03 Total: 41.08 kcal Total: -78.67 -0.39 -79.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069653146.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.785 kcal (2) G-P(sol) polarization free energy of solvation -78.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds