Wall clock time and date at job start Tue Mar 31 2020 05:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47004 * 2 1 4 4 C 1.52997 * 109.47430 * 239.99614 * 2 1 3 5 5 C 1.52999 * 109.47030 * 119.99962 * 2 1 3 6 6 N 1.46504 * 109.47196 * 54.26159 * 5 2 1 7 7 C 1.46494 * 120.00066 * 275.81003 * 6 5 2 8 8 C 1.50695 * 109.47759 * 270.00186 * 7 6 5 9 9 H 1.08001 * 119.99958 * 0.02562 * 8 7 6 10 10 C 1.37872 * 120.00293 * 180.02562 * 8 7 6 11 11 N 1.31520 * 120.00176 * 180.02562 * 10 8 7 12 12 Si 1.86803 * 119.99936 * 0.02562 * 10 8 7 13 13 H 1.48490 * 109.47087 * 90.00134 * 12 10 8 14 14 H 1.48501 * 109.47070 * 210.00053 * 12 10 8 15 15 H 1.48498 * 109.47238 * 329.99799 * 12 10 8 16 16 C 1.34775 * 119.99484 * 95.81597 * 6 5 2 17 17 O 1.21284 * 119.99335 * 185.44023 * 16 6 5 18 18 C 1.50695 * 120.00391 * 5.44382 * 16 6 5 19 19 C 1.50700 * 109.47285 * 174.41972 * 18 16 6 20 20 C 1.38277 * 119.93550 * 89.99625 * 19 18 16 21 21 C 1.38129 * 120.06328 * 180.25678 * 20 19 18 22 22 C 1.38826 * 119.93380 * 359.49002 * 21 20 19 23 23 N 1.40260 * 120.06455 * 180.25785 * 22 21 20 24 24 C 1.35065 * 127.38728 * 359.94131 * 23 22 21 25 25 N 1.30737 * 107.27228 * 179.84411 * 24 23 22 26 26 N 1.28416 * 110.64802 * 0.43369 * 25 24 23 27 27 N 1.28952 * 110.20440 * 359.73275 * 26 25 24 28 28 C 1.38817 * 119.86692 * 0.48511 * 22 21 20 29 29 C 1.38120 * 119.93824 * 359.77398 * 28 22 21 30 30 H 1.08998 * 109.47321 * 300.00040 * 1 2 3 31 31 H 1.08997 * 109.46935 * 60.00298 * 1 2 3 32 32 H 1.09000 * 109.47038 * 179.97438 * 1 2 3 33 33 H 1.09007 * 109.47176 * 180.02562 * 3 2 1 34 34 H 1.08997 * 109.47031 * 299.99643 * 3 2 1 35 35 H 1.08995 * 109.47562 * 60.00071 * 3 2 1 36 36 H 1.09005 * 109.47188 * 304.13679 * 4 2 1 37 37 H 1.09009 * 109.46821 * 64.13131 * 4 2 1 38 38 H 1.08995 * 109.47602 * 184.13011 * 4 2 1 39 39 H 1.09000 * 109.46867 * 294.26501 * 5 2 1 40 40 H 1.09000 * 109.47562 * 174.26622 * 5 2 1 41 41 H 1.08998 * 109.47107 * 30.00764 * 7 6 5 42 42 H 1.09003 * 109.46671 * 149.99795 * 7 6 5 43 43 H 0.97001 * 119.99938 * 180.02562 * 11 10 8 44 44 H 1.09002 * 109.47433 * 54.41433 * 18 16 6 45 45 H 1.09006 * 109.46847 * 294.41435 * 18 16 6 46 46 H 1.07998 * 119.97068 * 359.97438 * 20 19 18 47 47 H 1.08001 * 120.03335 * 179.74651 * 21 20 19 48 48 H 1.08005 * 126.36341 * 359.95650 * 24 23 22 49 49 H 1.08008 * 120.02752 * 179.78769 * 28 22 21 50 50 H 1.08001 * 119.96397 * 179.97438 * 29 28 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 2.0400 -0.7212 1.2492 6 7 1.4421 -2.0569 1.3203 7 6 0.1134 -2.2341 1.9111 8 6 0.2512 -2.4927 3.3893 9 1 1.2307 -2.5217 3.8435 10 6 -0.8730 -2.6923 4.1621 11 7 -0.7528 -2.9175 5.4523 12 14 -2.5671 -2.6429 3.3765 13 1 -2.9416 -4.0058 2.9213 14 1 -3.5601 -2.1630 4.3710 15 1 -2.5465 -1.7206 2.2129 16 6 2.1147 -3.1224 0.8422 17 8 1.5818 -4.2114 0.8104 18 6 3.5289 -2.9608 0.3472 19 6 4.0965 -4.3125 -0.0020 20 6 3.9503 -4.8123 -1.2829 21 6 4.4648 -6.0532 -1.6044 22 6 5.1385 -6.7941 -0.6429 23 7 5.6668 -8.0521 -0.9679 24 6 5.6070 -8.6835 -2.1603 25 7 6.2268 -9.8267 -2.0257 26 7 6.6665 -9.9651 -0.8271 27 7 6.3669 -8.9288 -0.1205 28 6 5.2841 -6.2894 0.6421 29 6 4.7628 -5.0503 0.9591 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9562 -0.8900 35 1 1.6767 1.9563 0.8899 36 1 1.6175 -1.7254 -1.2869 37 1 1.7384 -0.1665 -2.1377 38 1 3.1275 -0.7859 -1.2129 39 1 1.7629 -0.1515 2.1362 40 1 3.1251 -0.8111 1.1995 41 1 -0.4776 -1.3319 1.7536 42 1 -0.3841 -3.0812 1.4389 43 1 -1.5437 -3.0583 5.9958 44 1 4.1367 -2.5020 1.1271 45 1 3.5335 -2.3251 -0.5383 46 1 3.4293 -4.2339 -2.0315 47 1 4.3468 -6.4449 -2.6040 48 1 5.1364 -8.3121 -3.0587 49 1 5.8048 -6.8651 1.3931 50 1 4.8754 -4.6575 1.9588 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069697247.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:56 Heat of formation + Delta-G solvation = 114.299338 kcal Electronic energy + Delta-G solvation = -31952.026666 eV Core-core repulsion = 27789.514367 eV Total energy + Delta-G solvation = -4162.512300 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 357.191 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.42651 -40.28878 -39.30292 -37.24224 -35.57391 -34.03363 -32.62041 -32.55445 -32.00827 -31.31521 -29.18619 -27.63074 -27.14723 -27.02755 -25.68817 -24.63479 -24.21036 -22.54518 -21.98580 -21.42777 -19.46668 -18.91644 -18.15326 -17.10377 -16.84621 -16.67658 -16.47943 -15.99617 -15.87679 -15.18727 -15.07594 -14.43736 -14.33971 -13.97745 -13.92962 -13.88421 -13.63615 -13.53078 -13.43235 -12.96958 -12.76667 -12.65105 -12.47365 -12.15495 -11.96397 -11.86787 -11.63514 -11.62440 -11.50415 -11.46385 -11.27939 -11.23285 -11.04298 -10.92303 -10.76140 -10.65921 -10.60667 -10.36083 -10.11142 -9.58473 -9.31549 -9.23321 -8.65176 -8.63548 -7.76723 -6.14514 -4.13183 0.10027 1.05145 1.40269 1.52018 2.00788 3.18493 3.23339 3.28958 3.31304 3.35244 3.75844 3.80555 3.97212 4.33771 4.45954 4.51547 4.60013 4.62789 4.81489 4.83525 4.87266 5.04123 5.06256 5.09531 5.14087 5.22072 5.27733 5.36885 5.42874 5.50277 5.53720 5.58369 5.70117 5.75124 5.77872 5.86324 5.93612 5.96239 5.98804 6.02365 6.12023 6.16039 6.22850 6.32760 6.38038 6.49381 6.58583 6.68621 6.88621 7.25963 7.56202 8.13243 8.14889 8.40429 8.83186 8.89843 9.45909 10.98842 Molecular weight = 357.19amu Principal moments of inertia in cm(-1) A = 0.010734 B = 0.002669 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2608.001590 B =10489.138518 C =12183.895329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.087 4.087 3 C -0.138 4.138 4 C -0.145 4.145 5 C 0.117 3.883 6 N -0.586 5.586 7 C 0.209 3.791 8 C -0.530 4.530 9 H 0.073 0.927 10 C 0.073 3.927 11 N -0.897 5.897 12 Si 0.873 3.127 13 H -0.274 1.274 14 H -0.285 1.285 15 H -0.265 1.265 16 C 0.513 3.487 17 O -0.536 6.536 18 C -0.121 4.121 19 C -0.038 4.038 20 C -0.082 4.082 21 C -0.117 4.117 22 C 0.114 3.886 23 N -0.317 5.317 24 C 0.222 3.778 25 N -0.334 5.334 26 N -0.040 5.040 27 N -0.077 5.077 28 C -0.095 4.095 29 C -0.083 4.083 30 H 0.059 0.941 31 H 0.046 0.954 32 H 0.067 0.933 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.054 0.946 38 H 0.055 0.945 39 H 0.084 0.916 40 H 0.071 0.929 41 H 0.041 0.959 42 H 0.035 0.965 43 H 0.265 0.735 44 H 0.102 0.898 45 H 0.109 0.891 46 H 0.136 0.864 47 H 0.133 0.867 48 H 0.238 0.762 49 H 0.141 0.859 50 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.137 4.800 -17.585 21.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.088 4.088 3 C -0.196 4.196 4 C -0.202 4.202 5 C -0.007 4.007 6 N -0.317 5.317 7 C 0.089 3.911 8 C -0.568 4.568 9 H 0.092 0.908 10 C -0.129 4.129 11 N -0.535 5.535 12 Si 0.700 3.300 13 H -0.200 1.200 14 H -0.211 1.211 15 H -0.190 1.190 16 C 0.300 3.700 17 O -0.413 6.413 18 C -0.160 4.160 19 C -0.039 4.039 20 C -0.101 4.101 21 C -0.137 4.137 22 C 0.022 3.978 23 N -0.107 5.107 24 C -0.075 4.075 25 N -0.183 5.183 26 N -0.035 5.035 27 N -0.062 5.062 28 C -0.115 4.115 29 C -0.102 4.102 30 H 0.078 0.922 31 H 0.065 0.935 32 H 0.086 0.914 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.102 0.898 40 H 0.089 0.911 41 H 0.059 0.941 42 H 0.053 0.947 43 H 0.075 0.925 44 H 0.120 0.880 45 H 0.127 0.873 46 H 0.154 0.846 47 H 0.151 0.849 48 H 0.254 0.746 49 H 0.158 0.842 50 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 11.472 3.119 -16.709 20.507 hybrid contribution -1.556 0.820 -0.465 1.819 sum 9.916 3.938 -17.174 20.218 Atomic orbital electron populations 1.22071 0.94194 1.02870 1.01191 1.20999 0.96750 0.95360 0.95722 1.21806 1.00689 0.95123 1.01942 1.22049 1.00219 1.00771 0.97194 1.21615 0.97124 0.84303 0.97643 1.47812 1.19819 1.05649 1.58388 1.19870 0.79484 0.97524 0.94219 1.21330 0.95240 1.49439 0.90816 0.90846 1.24840 0.98933 0.94462 0.94681 1.69892 1.29829 1.48604 1.05192 0.86901 0.84564 0.79122 0.79432 1.19965 1.21076 1.18966 1.20028 0.86929 0.84630 0.78462 1.90703 1.69379 1.25572 1.55623 1.21116 0.95779 0.95133 1.04012 1.19625 0.95170 0.95788 0.93354 1.20824 0.98085 0.94599 0.96589 1.20737 0.99374 0.95245 0.98393 1.17547 1.01770 0.82184 0.96315 1.49085 1.37750 1.14963 1.08906 1.27395 0.97976 0.89936 0.92165 1.74462 1.15271 1.16507 1.12070 1.78071 1.13414 1.14501 0.97543 1.82684 1.11711 0.96783 1.15006 1.20906 1.00150 0.96300 0.94120 1.21038 0.96186 0.93222 0.99727 0.92196 0.93469 0.91399 0.92714 0.92721 0.92298 0.92431 0.92727 0.92580 0.89773 0.91078 0.94092 0.94749 0.92541 0.87980 0.87325 0.84581 0.84914 0.74575 0.84167 0.84343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 6.98 37.16 0.26 -1.66 16 2 C -0.09 -0.97 0.85 -154.51 -0.13 -1.10 16 3 C -0.14 -1.23 8.47 37.15 0.31 -0.91 16 4 C -0.15 -1.39 6.84 37.16 0.25 -1.14 16 5 C 0.12 1.58 4.58 -4.04 -0.02 1.56 16 6 N -0.59 -10.47 2.00 -175.07 -0.35 -10.82 16 7 C 0.21 4.70 3.00 -5.20 -0.02 4.68 16 8 C -0.53 -14.41 9.94 -34.44 -0.34 -14.76 16 9 H 0.07 2.19 8.06 -52.49 -0.42 1.77 16 10 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 11 N -0.90 -26.97 13.96 55.43 0.77 -26.20 16 12 Si 0.87 20.91 27.47 -169.99 -4.67 16.24 16 13 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 14 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 15 H -0.26 -5.88 6.54 56.52 0.37 -5.51 16 16 C 0.51 8.96 6.40 -10.99 -0.07 8.89 16 17 O -0.54 -11.84 15.60 5.55 0.09 -11.76 16 18 C -0.12 -1.41 4.19 -29.04 -0.12 -1.53 16 19 C -0.04 -0.45 4.38 -104.59 -0.46 -0.90 16 20 C -0.08 -0.81 9.69 -39.61 -0.38 -1.19 16 21 C -0.12 -1.04 9.49 -39.40 -0.37 -1.41 16 22 C 0.11 1.24 6.70 -83.57 -0.56 0.68 16 23 N -0.32 -3.62 3.85 -11.74 -0.05 -3.66 16 24 C 0.22 2.04 12.16 -90.16 -1.10 0.94 16 25 N -0.33 -4.13 12.15 29.64 0.36 -3.77 16 26 N -0.04 -0.58 13.39 60.35 0.81 0.23 16 27 N -0.08 -1.06 13.34 60.35 0.80 -0.26 16 28 C -0.09 -1.11 9.70 -39.41 -0.38 -1.49 16 29 C -0.08 -0.99 9.69 -39.61 -0.38 -1.38 16 30 H 0.06 0.83 7.72 -51.93 -0.40 0.43 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 1.05 5.76 -51.93 -0.30 0.76 16 33 H 0.05 0.42 8.14 -51.92 -0.42 -0.01 16 34 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.65 6.74 -51.93 -0.35 0.30 16 37 H 0.05 0.47 8.14 -51.92 -0.42 0.04 16 38 H 0.06 0.43 6.49 -51.93 -0.34 0.09 16 39 H 0.08 1.25 8.11 -51.93 -0.42 0.83 16 40 H 0.07 0.76 6.11 -51.93 -0.32 0.44 16 41 H 0.04 0.88 4.38 -51.93 -0.23 0.65 16 42 H 0.03 0.85 6.78 -51.93 -0.35 0.50 16 43 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 44 H 0.10 1.03 7.29 -51.93 -0.38 0.66 16 45 H 0.11 0.97 4.61 -51.93 -0.24 0.73 16 46 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 47 H 0.13 0.69 6.88 -52.49 -0.36 0.33 16 48 H 0.24 0.84 7.19 -52.48 -0.38 0.46 16 49 H 0.14 1.60 7.77 -52.48 -0.41 1.19 16 50 H 0.14 1.55 8.06 -52.49 -0.42 1.13 16 LS Contribution 400.06 15.07 6.03 6.03 Total: -1.00 -35.69 400.06 -6.83 -42.52 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -7.02 Total: 0.19 kcal Atomic # 6 Polarization: -5.13 SS G_CDS: -3.61 Total: -8.74 kcal Atomic # 7 Polarization: -46.83 SS G_CDS: 2.35 Total: -44.48 kcal Atomic # 8 Polarization: -11.84 SS G_CDS: 0.09 Total: -11.76 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.67 Total: 16.24 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -35.69 -6.83 -42.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069697247.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.818 kcal (2) G-P(sol) polarization free energy of solvation -35.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds