Wall clock time and date at job start Tue Mar 31 2020 05:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38560 * 120.11282 * 2 1 4 4 O 1.35750 * 119.72183 * 359.97438 * 3 2 1 5 5 C 1.39321 * 120.54992 * 180.02562 * 3 2 1 6 6 C 1.36492 * 120.42613 * 359.97438 * 5 3 2 7 7 C 1.39926 * 119.80055 * 359.97438 * 6 5 3 8 8 C 1.46440 * 120.99471 * 180.02562 * 7 6 5 9 9 C 1.50705 * 120.90007 * 359.97438 * 8 7 6 10 10 N 1.46895 * 109.46979 * 80.00183 * 9 8 7 11 11 C 1.46896 * 110.99848 * 189.99996 * 10 9 8 12 12 C 1.50698 * 109.47422 * 75.50354 * 11 10 9 13 13 H 1.07997 * 119.99992 * 355.23339 * 12 11 10 14 14 C 1.37881 * 120.00259 * 175.23850 * 12 11 10 15 15 N 1.31517 * 119.99808 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99883 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47208 * 59.99958 * 16 14 12 18 18 H 1.48507 * 109.46801 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47204 * 299.99481 * 16 14 12 20 20 C 1.46904 * 111.00197 * 66.04477 * 10 9 8 21 21 H 1.08997 * 109.46556 * 309.14675 * 20 10 9 22 22 C 1.53000 * 109.46936 * 69.14761 * 20 10 9 23 23 C 1.52999 * 109.47112 * 189.14930 * 20 10 9 24 24 C 1.53004 * 117.49477 * 243.30146 * 23 20 10 25 25 C 1.52992 * 117.49764 * 174.68149 * 23 20 10 26 26 C 1.35844 * 118.19431 * 179.97438 * 8 7 6 27 27 C 1.41005 * 119.83060 * 359.97438 * 26 8 7 28 28 O 1.21791 * 119.15471 * 180.02562 * 27 26 8 29 29 O 1.34227 * 121.69047 * 0.03184 * 27 26 8 30 30 C 1.35028 * 121.46695 * 359.70671 * 29 27 26 31 31 H 1.08999 * 109.47089 * 89.99691 * 1 2 3 32 32 H 1.09006 * 109.46951 * 329.99956 * 1 2 3 33 33 H 1.08995 * 109.47230 * 210.00415 * 1 2 3 34 34 H 0.96703 * 113.99796 * 89.99924 * 4 3 2 35 35 H 1.08002 * 119.78517 * 179.97438 * 5 3 2 36 36 H 1.08004 * 120.10396 * 180.02562 * 6 5 3 37 37 H 1.08996 * 109.47128 * 200.00228 * 9 8 7 38 38 H 1.09006 * 109.46786 * 320.00004 * 9 8 7 39 39 H 1.09000 * 109.47287 * 195.50206 * 11 10 9 40 40 H 1.08997 * 109.47285 * 315.50178 * 11 10 9 41 41 H 0.96995 * 119.99386 * 180.02562 * 15 14 12 42 42 H 1.09000 * 109.47141 * 59.99703 * 22 20 10 43 43 H 1.08995 * 109.47016 * 180.02562 * 22 20 10 44 44 H 1.09008 * 109.47143 * 300.00196 * 22 20 10 45 45 H 1.08994 * 115.55008 * 29.00247 * 23 20 10 46 46 H 1.09002 * 117.49744 * 0.02562 * 24 23 20 47 47 H 1.08994 * 117.49753 * 145.02124 * 24 23 20 48 48 H 1.08997 * 117.49932 * 214.97694 * 25 23 20 49 49 H 1.09003 * 117.50143 * 359.97312 * 25 23 20 50 50 H 1.08003 * 120.08088 * 179.97438 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2021 1.1986 0.0000 4 8 1.5200 2.3723 -0.0005 5 6 3.5953 1.2092 -0.0005 6 6 4.2955 0.0376 -0.0005 7 6 3.6099 -1.1822 0.0005 8 6 4.3348 -2.4546 0.0011 9 6 5.8415 -2.4870 0.0000 10 7 6.3372 -2.2559 1.3633 11 6 7.7909 -2.0446 1.3661 12 6 8.0983 -0.6603 0.8559 13 1 7.3015 -0.0314 0.4871 14 6 9.3968 -0.1966 0.8598 15 7 10.3671 -0.9623 1.3093 16 14 9.7776 1.5195 0.2281 17 1 9.0368 2.5205 1.0370 18 1 11.2362 1.7755 0.3392 19 1 9.3627 1.6270 -1.1937 20 6 5.9645 -3.3632 2.2538 21 1 4.8960 -3.5584 2.1631 22 6 6.7474 -4.6181 1.8623 23 6 6.2933 -2.9875 3.7001 24 6 7.3425 -3.8304 4.4278 25 6 5.8639 -3.9622 4.7983 26 6 3.6122 -3.6049 0.0027 27 6 2.2033 -3.5482 0.0043 28 8 1.5677 -4.5871 0.0062 29 8 1.5447 -2.3786 0.0036 30 6 2.2024 -1.1994 0.0073 31 1 -0.3633 0.0001 -1.0277 32 1 -0.3633 0.8900 0.5139 33 1 -0.3633 -0.8899 0.5139 34 1 1.3220 2.7125 0.8828 35 1 4.1246 2.1506 -0.0009 36 1 5.3754 0.0519 -0.0005 37 1 6.1837 -3.4606 -0.3509 38 1 6.2211 -1.7083 -0.6616 39 1 8.1715 -2.1501 2.3820 40 1 8.2667 -2.7834 0.7213 41 1 11.2804 -0.6359 1.3124 42 1 7.8159 -4.4228 1.9529 43 1 6.4705 -5.4398 2.5227 44 1 6.5131 -4.8858 0.8319 45 1 6.2555 -1.9226 3.9293 46 1 7.7987 -4.6524 3.8761 47 1 7.9952 -3.3201 5.1360 48 1 5.5438 -3.5386 5.7502 49 1 5.3467 -4.8711 4.4906 50 1 4.1156 -4.5605 0.0027 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069809419.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:57 Heat of formation + Delta-G solvation = -41.278397 kcal Electronic energy + Delta-G solvation = -33164.496884 eV Core-core repulsion = 28930.652725 eV Total energy + Delta-G solvation = -4233.844159 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 357.177 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.91876 -39.62805 -38.97412 -37.74321 -36.78385 -35.72529 -34.15823 -32.71847 -32.29524 -29.62836 -29.22613 -27.93720 -26.97734 -25.90794 -24.28651 -24.05426 -22.86653 -21.96587 -21.56847 -20.75925 -19.94414 -18.28307 -17.88820 -17.60610 -17.38836 -16.74839 -16.60462 -15.87487 -15.41532 -15.31301 -15.02682 -14.82474 -14.50005 -14.23024 -13.89968 -13.83657 -13.50230 -13.48256 -13.15582 -12.84238 -12.70529 -12.45493 -12.28259 -12.16979 -11.94070 -11.88922 -11.72008 -11.53159 -11.35276 -11.20596 -10.93970 -10.84516 -10.79340 -10.72017 -10.50371 -10.26890 -10.11074 -9.92149 -9.86979 -9.38608 -9.33062 -8.66050 -8.52698 -8.27029 -7.48262 -6.13540 -4.16059 0.21258 1.01851 1.50079 2.39807 2.82403 3.23651 3.29751 3.30546 3.59182 3.98801 4.15838 4.19072 4.29050 4.32757 4.48013 4.68611 4.74303 4.93131 5.13910 5.16177 5.20827 5.22808 5.28716 5.43106 5.47772 5.50003 5.55819 5.58687 5.65559 5.69215 5.78353 5.80968 5.87907 5.92087 6.01705 6.06323 6.10839 6.17701 6.19108 6.27646 6.33733 6.41780 6.44557 6.47417 6.59957 6.68861 7.10825 7.21288 7.22577 7.36512 7.52788 7.65583 7.93923 8.00796 8.36386 8.89223 9.48316 10.96413 Molecular weight = 357.18amu Principal moments of inertia in cm(-1) A = 0.007781 B = 0.004410 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3597.705461 B = 6347.431897 C = 8704.274427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.139 4.139 3 C 0.156 3.844 4 O -0.490 6.490 5 C -0.165 4.165 6 C -0.020 4.020 7 C -0.144 4.144 8 C 0.068 3.932 9 C 0.079 3.921 10 N -0.517 5.517 11 C 0.193 3.807 12 C -0.511 4.511 13 H 0.060 0.940 14 C 0.060 3.940 15 N -0.894 5.894 16 Si 0.892 3.108 17 H -0.276 1.276 18 H -0.288 1.288 19 H -0.277 1.277 20 C 0.105 3.895 21 H 0.072 0.928 22 C -0.187 4.187 23 C -0.124 4.124 24 C -0.180 4.180 25 C -0.188 4.188 26 C -0.274 4.274 27 C 0.515 3.485 28 O -0.478 6.478 29 O -0.272 6.272 30 C 0.156 3.844 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.394 0.606 35 H 0.140 0.860 36 H 0.162 0.838 37 H 0.051 0.949 38 H 0.105 0.895 39 H 0.047 0.953 40 H -0.007 1.007 41 H 0.262 0.738 42 H 0.071 0.929 43 H 0.052 0.948 44 H 0.050 0.950 45 H 0.111 0.889 46 H 0.097 0.903 47 H 0.089 0.911 48 H 0.087 0.913 49 H 0.087 0.913 50 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.320 1.048 0.693 13.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.140 4.140 3 C 0.111 3.889 4 O -0.301 6.301 5 C -0.184 4.184 6 C -0.037 4.037 7 C -0.145 4.145 8 C 0.066 3.934 9 C -0.048 4.048 10 N -0.240 5.240 11 C 0.069 3.931 12 C -0.550 4.550 13 H 0.078 0.922 14 C -0.142 4.142 15 N -0.533 5.533 16 Si 0.719 3.281 17 H -0.202 1.202 18 H -0.214 1.214 19 H -0.202 1.202 20 C -0.004 4.004 21 H 0.090 0.910 22 C -0.246 4.246 23 C -0.143 4.143 24 C -0.217 4.217 25 C -0.226 4.226 26 C -0.294 4.294 27 C 0.366 3.634 28 O -0.367 6.367 29 O -0.184 6.184 30 C 0.111 3.889 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.252 0.748 35 H 0.158 0.842 36 H 0.179 0.821 37 H 0.069 0.931 38 H 0.123 0.877 39 H 0.065 0.935 40 H 0.011 0.989 41 H 0.072 0.928 42 H 0.090 0.910 43 H 0.071 0.929 44 H 0.069 0.931 45 H 0.129 0.871 46 H 0.115 0.885 47 H 0.107 0.893 48 H 0.106 0.894 49 H 0.105 0.895 50 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -13.796 0.927 0.298 13.830 hybrid contribution 0.957 0.196 -0.042 0.978 sum -12.838 1.123 0.256 12.890 Atomic orbital electron populations 1.20499 0.89399 1.02906 1.02839 1.19412 0.97381 0.89290 1.07950 1.18138 0.89498 0.84179 0.97092 1.84758 1.76212 1.35475 1.33694 1.21221 0.92820 0.99864 1.04485 1.21220 1.02099 0.89381 0.91046 1.19040 0.90934 0.94978 1.09532 1.21821 0.97410 0.90475 0.83654 1.21240 0.86831 1.02381 0.94357 1.62408 1.18781 1.38265 1.04592 1.19811 0.79049 0.96085 0.98183 1.21066 0.92489 0.99655 1.41756 0.92172 1.24934 0.96323 0.97421 0.95496 1.69928 1.00328 1.36594 1.46401 0.86666 0.77312 0.84709 0.79368 1.20158 1.21374 1.20233 1.21214 0.98412 0.89392 0.91393 0.91019 1.22580 1.02589 0.98721 1.00674 1.22179 1.02835 0.97644 0.91632 1.23076 0.91529 1.03377 1.03709 1.22944 0.98358 1.01666 0.99632 1.22365 0.92461 1.00688 1.13891 1.19168 0.88378 0.80803 0.75100 1.90949 1.70871 1.26962 1.47964 1.83485 1.43343 1.13808 1.77731 1.18615 0.89246 0.83201 0.97838 0.90952 0.91177 0.91060 0.74812 0.84209 0.82081 0.93122 0.87684 0.93496 0.98914 0.92796 0.90974 0.92900 0.93128 0.87062 0.88506 0.89290 0.89420 0.89470 0.82433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.01 9.58 36.00 0.34 -0.66 16 2 C -0.14 -1.71 5.90 -104.36 -0.62 -2.32 16 3 C 0.16 1.78 6.68 -39.06 -0.26 1.52 16 4 O -0.49 -4.54 12.50 -18.96 -0.24 -4.78 16 5 C -0.17 -2.01 9.91 -39.81 -0.39 -2.41 16 6 C -0.02 -0.27 9.38 -39.58 -0.37 -0.65 16 7 C -0.14 -2.08 5.87 -105.01 -0.62 -2.70 16 8 C 0.07 1.00 4.79 -102.18 -0.49 0.51 16 9 C 0.08 1.27 4.18 -4.98 -0.02 1.25 16 10 N -0.52 -9.23 4.37 -229.52 -1.00 -10.23 16 11 C 0.19 4.28 3.38 -4.98 -0.02 4.26 16 12 C -0.51 -12.41 8.61 -34.44 -0.30 -12.71 16 13 H 0.06 1.39 6.09 -52.49 -0.32 1.07 16 14 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 15 N -0.89 -24.39 13.29 55.43 0.74 -23.66 16 16 Si 0.89 19.78 29.54 -169.99 -5.02 14.76 16 17 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 18 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 20 C 0.10 1.68 2.53 -67.71 -0.17 1.51 16 21 H 0.07 1.13 6.17 -51.93 -0.32 0.81 16 22 C -0.19 -2.84 7.11 37.16 0.26 -2.58 16 23 C -0.12 -1.99 4.62 -90.62 -0.42 -2.41 16 24 C -0.18 -2.70 9.26 -26.73 -0.25 -2.94 16 25 C -0.19 -2.54 9.96 -26.74 -0.27 -2.80 16 26 C -0.27 -3.98 8.42 -39.39 -0.33 -4.31 16 27 C 0.51 8.31 7.89 31.78 0.25 8.57 16 28 O -0.48 -8.86 17.91 -19.59 -0.35 -9.21 16 29 O -0.27 -4.18 8.92 -20.82 -0.19 -4.37 16 30 C 0.16 2.21 6.72 -38.48 -0.26 1.95 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.56 7.52 -51.93 -0.39 0.17 16 33 H 0.07 0.75 7.57 -51.93 -0.39 0.35 16 34 H 0.39 1.79 9.06 45.56 0.41 2.20 16 35 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 36 H 0.16 2.45 5.21 -52.48 -0.27 2.17 16 37 H 0.05 0.78 6.24 -51.93 -0.32 0.46 16 38 H 0.11 1.76 6.33 -51.93 -0.33 1.43 16 39 H 0.05 1.14 6.61 -51.93 -0.34 0.80 16 40 H -0.01 -0.17 7.31 -51.93 -0.38 -0.55 16 41 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 42 H 0.07 1.24 5.89 -51.93 -0.31 0.93 16 43 H 0.05 0.72 7.19 -51.93 -0.37 0.34 16 44 H 0.05 0.73 6.54 -51.92 -0.34 0.39 16 45 H 0.11 1.96 8.14 -51.93 -0.42 1.54 16 46 H 0.10 1.44 5.82 -51.93 -0.30 1.14 16 47 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 48 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 49 H 0.09 1.11 7.95 -51.93 -0.41 0.69 16 50 H 0.16 2.11 8.05 -52.48 -0.42 1.69 16 LS Contribution 396.58 15.07 5.98 5.98 Total: -1.00 -29.03 396.58 -10.16 -39.19 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -6.06 Total: 7.79 kcal Atomic # 6 Polarization: -11.47 SS G_CDS: -4.01 Total: -15.48 kcal Atomic # 7 Polarization: -33.62 SS G_CDS: -0.27 Total: -33.89 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: -0.77 Total: -18.35 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.02 Total: 14.76 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -29.03 -10.16 -39.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069809419.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.088 kcal (2) G-P(sol) polarization free energy of solvation -29.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds