Wall clock time and date at job start Tue Mar 31 2020 05:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38554 * 120.10999 * 2 1 4 4 O 1.35747 * 119.72709 * 359.97438 * 3 2 1 5 5 C 1.39330 * 120.54533 * 179.97438 * 3 2 1 6 6 C 1.36500 * 120.42832 * 0.02562 * 5 3 2 7 7 C 1.39932 * 119.79439 * 359.68291 * 6 5 3 8 8 C 1.46444 * 120.98817 * 179.71372 * 7 6 5 9 9 C 1.50700 * 120.90475 * 0.62462 * 8 7 6 10 10 N 1.46899 * 109.47224 * 86.60525 * 9 8 7 11 11 C 1.46901 * 111.00420 * 288.32751 * 10 9 8 12 12 C 1.50700 * 109.47126 * 172.07710 * 11 10 9 13 13 H 1.07996 * 120.00018 * 359.97438 * 12 11 10 14 14 C 1.37871 * 119.99571 * 180.02562 * 12 11 10 15 15 N 1.31517 * 119.99771 * 180.02562 * 14 12 11 16 16 Si 1.86796 * 120.00645 * 359.97438 * 14 12 11 17 17 H 1.48505 * 109.47130 * 89.99942 * 16 14 12 18 18 H 1.48498 * 109.47529 * 210.00497 * 16 14 12 19 19 H 1.48510 * 109.46930 * 330.00521 * 16 14 12 20 20 C 1.46896 * 111.00023 * 164.36580 * 10 9 8 21 21 H 1.09000 * 109.46904 * 174.52190 * 20 10 9 22 22 C 1.53005 * 109.46675 * 54.53127 * 20 10 9 23 23 C 1.52997 * 109.47585 * 294.52975 * 20 10 9 24 24 C 1.52993 * 117.49876 * 182.53250 * 23 20 10 25 25 C 1.52998 * 117.49796 * 113.90875 * 23 20 10 26 26 C 1.35840 * 118.18930 * 180.35175 * 8 7 6 27 27 C 1.41002 * 119.83410 * 0.24678 * 26 8 7 28 28 O 1.21798 * 119.15463 * 180.02562 * 27 26 8 29 29 O 1.34227 * 121.69338 * 0.02887 * 27 26 8 30 30 C 1.35032 * 121.45891 * 359.97286 * 29 27 26 31 31 H 1.09004 * 109.46856 * 270.02152 * 1 2 3 32 32 H 1.09005 * 109.47102 * 30.01760 * 1 2 3 33 33 H 1.09003 * 109.47764 * 150.02122 * 1 2 3 34 34 H 0.96700 * 114.00186 * 89.99184 * 4 3 2 35 35 H 1.07994 * 119.78616 * 179.97438 * 5 3 2 36 36 H 1.07996 * 120.10164 * 179.97438 * 6 5 3 37 37 H 1.09007 * 109.46636 * 326.60914 * 9 8 7 38 38 H 1.08994 * 109.46905 * 206.60931 * 9 8 7 39 39 H 1.08999 * 109.46720 * 292.08021 * 11 10 9 40 40 H 1.09000 * 109.46770 * 52.07405 * 11 10 9 41 41 H 0.97005 * 120.00193 * 179.97438 * 15 14 12 42 42 H 1.09000 * 109.46689 * 299.99194 * 22 20 10 43 43 H 1.08998 * 109.47435 * 59.99683 * 22 20 10 44 44 H 1.09000 * 109.46961 * 179.97438 * 22 20 10 45 45 H 1.08999 * 115.55688 * 328.22147 * 23 20 10 46 46 H 1.09009 * 117.49687 * 145.02173 * 24 23 20 47 47 H 1.08999 * 117.50497 * 359.97438 * 24 23 20 48 48 H 1.08996 * 117.50108 * 0.02562 * 25 23 20 49 49 H 1.09006 * 117.49791 * 214.97642 * 25 23 20 50 50 H 1.08003 * 120.08224 * 180.23248 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2020 1.1986 0.0000 4 8 1.5200 2.3722 -0.0005 5 6 3.5953 1.2092 0.0005 6 6 4.2955 0.0375 0.0005 7 6 3.6099 -1.1823 0.0067 8 6 4.3347 -2.4548 0.0006 9 6 5.8414 -2.4873 0.0016 10 7 6.3317 -2.4231 1.3848 11 6 6.1291 -1.0839 1.9537 12 6 6.4610 -1.1070 3.4235 13 1 6.7891 -2.0248 3.8886 14 6 6.3447 0.0433 4.1745 15 7 6.6347 0.0233 5.4572 16 14 5.7765 1.6306 3.3702 17 1 4.2966 1.7246 3.4515 18 1 6.3854 2.7878 4.0739 19 1 6.1956 1.6412 1.9455 20 6 7.7440 -2.8197 1.4617 21 1 8.1084 -2.6706 2.4781 22 6 8.5667 -1.9660 0.4946 23 6 7.8808 -4.2955 1.0821 24 6 9.2762 -4.9182 1.1585 25 6 8.6420 -4.6268 -0.2031 26 6 3.6120 -3.6050 -0.0002 27 6 2.2031 -3.5482 -0.0006 28 8 1.5674 -4.5871 -0.0009 29 8 1.5445 -2.3786 -0.0006 30 6 2.2024 -1.1994 0.0002 31 1 -0.3633 0.0004 1.0277 32 1 -0.3633 0.8899 -0.5141 33 1 -0.3635 -0.8902 -0.5135 34 1 1.3219 2.7125 0.8827 35 1 4.1246 2.1505 0.0001 36 1 5.3754 0.0518 0.0005 37 1 6.2235 -1.6343 -0.5593 38 1 6.1851 -3.4113 -0.4633 39 1 6.7789 -0.3714 1.4456 40 1 5.0891 -0.7862 1.8206 41 1 6.5533 0.8327 5.9856 42 1 8.2023 -2.1151 -0.5218 43 1 8.4693 -0.9145 0.7650 44 1 9.6148 -2.2599 0.5519 45 1 7.0323 -4.9285 1.3419 46 1 9.3458 -5.9609 1.4685 47 1 10.0970 -4.2764 1.4787 48 1 9.0458 -3.7933 -0.7779 49 1 8.2944 -5.4778 -0.7888 50 1 4.1153 -4.5606 -0.0009 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069809420.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:01 Heat of formation + Delta-G solvation = -31.098039 kcal Electronic energy + Delta-G solvation = -33560.331427 eV Core-core repulsion = 29326.928721 eV Total energy + Delta-G solvation = -4233.402705 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 357.177 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.92273 -39.66270 -39.13739 -37.71349 -36.92569 -35.67745 -34.28809 -32.68399 -32.37628 -29.58140 -29.30021 -28.52074 -27.21983 -25.87067 -24.31280 -24.12380 -22.82888 -22.20961 -21.60175 -20.47537 -19.99121 -18.56120 -17.79177 -17.60311 -17.41307 -16.88750 -16.66398 -16.13404 -15.52970 -15.35031 -15.21705 -14.82827 -14.48394 -14.26505 -14.01399 -13.80049 -13.65345 -13.47488 -13.03900 -12.81772 -12.75923 -12.64658 -12.52547 -12.34460 -12.14643 -12.05374 -11.68806 -11.62882 -11.52849 -11.29348 -11.18259 -10.82560 -10.76487 -10.69099 -10.54005 -10.22458 -10.09237 -9.98311 -9.94673 -9.64676 -9.32087 -8.74723 -8.59635 -8.21728 -7.61796 -6.17740 -4.15370 0.21757 0.99400 1.48972 2.42624 2.83047 3.12574 3.16385 3.21547 3.56239 3.99628 4.00657 4.18205 4.26846 4.28426 4.42172 4.57491 4.72547 4.87831 5.00829 5.08102 5.14139 5.14588 5.17439 5.28633 5.37224 5.47901 5.48585 5.53125 5.55561 5.63051 5.70531 5.73603 5.78447 5.81095 5.94136 5.98634 6.02089 6.09453 6.14155 6.16224 6.23618 6.26631 6.33163 6.36970 6.44805 6.59891 6.76161 6.84014 7.24571 7.37256 7.40221 7.56448 7.68279 7.81455 8.49071 8.91097 9.42610 10.95132 Molecular weight = 357.18amu Principal moments of inertia in cm(-1) A = 0.007884 B = 0.005086 C = 0.003591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3550.731826 B = 5503.808608 C = 7794.766754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.132 4.132 3 C 0.157 3.843 4 O -0.490 6.490 5 C -0.165 4.165 6 C -0.037 4.037 7 C -0.146 4.146 8 C 0.058 3.942 9 C 0.075 3.925 10 N -0.509 5.509 11 C 0.149 3.851 12 C -0.510 4.510 13 H 0.083 0.917 14 C 0.072 3.928 15 N -0.895 5.895 16 Si 0.864 3.136 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.265 1.265 20 C 0.118 3.882 21 H 0.109 0.891 22 C -0.186 4.186 23 C -0.136 4.136 24 C -0.178 4.178 25 C -0.196 4.196 26 C -0.245 4.245 27 C 0.514 3.486 28 O -0.475 6.475 29 O -0.270 6.270 30 C 0.160 3.840 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.397 0.603 35 H 0.138 0.862 36 H 0.146 0.854 37 H 0.048 0.952 38 H 0.094 0.906 39 H -0.006 1.006 40 H 0.035 0.965 41 H 0.264 0.736 42 H 0.052 0.948 43 H 0.062 0.938 44 H 0.056 0.944 45 H 0.109 0.891 46 H 0.089 0.911 47 H 0.092 0.908 48 H 0.096 0.904 49 H 0.086 0.914 50 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.744 0.450 -13.439 13.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.133 4.133 3 C 0.112 3.888 4 O -0.302 6.302 5 C -0.183 4.183 6 C -0.055 4.055 7 C -0.147 4.147 8 C 0.056 3.944 9 C -0.053 4.053 10 N -0.232 5.232 11 C 0.023 3.977 12 C -0.548 4.548 13 H 0.101 0.899 14 C -0.130 4.130 15 N -0.534 5.534 16 Si 0.691 3.309 17 H -0.200 1.200 18 H -0.212 1.212 19 H -0.189 1.189 20 C 0.009 3.991 21 H 0.127 0.873 22 C -0.245 4.245 23 C -0.154 4.154 24 C -0.215 4.215 25 C -0.233 4.233 26 C -0.265 4.265 27 C 0.364 3.636 28 O -0.364 6.364 29 O -0.182 6.182 30 C 0.115 3.885 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.255 0.745 35 H 0.156 0.844 36 H 0.163 0.837 37 H 0.066 0.934 38 H 0.112 0.888 39 H 0.011 0.989 40 H 0.053 0.947 41 H 0.074 0.926 42 H 0.071 0.929 43 H 0.081 0.919 44 H 0.075 0.925 45 H 0.127 0.873 46 H 0.108 0.892 47 H 0.111 0.889 48 H 0.115 0.885 49 H 0.105 0.895 50 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -3.490 -0.314 -13.584 14.028 hybrid contribution 0.382 1.579 -0.047 1.625 sum -3.108 1.265 -13.631 14.038 Atomic orbital electron populations 1.20565 0.89164 1.03549 1.02902 1.19455 0.97595 0.89199 1.07097 1.18050 0.89300 0.84393 0.97081 1.84690 1.76092 1.35403 1.33986 1.21156 0.93213 0.99537 1.04444 1.20998 1.01017 0.90096 0.93382 1.19063 0.91500 0.94785 1.09385 1.21512 0.96825 0.90479 0.85584 1.21225 0.88195 1.02419 0.93469 1.62167 1.17465 1.30356 1.13245 1.20600 0.96249 0.84245 0.96574 1.20980 1.45065 0.97736 0.90995 0.89921 1.24867 0.95085 0.98434 0.94662 1.69879 1.48849 1.28608 1.06043 0.87033 0.79534 0.84212 0.80115 1.20028 1.21175 1.18938 1.21184 0.86901 0.90184 1.00785 0.87321 1.22567 1.00590 1.01677 0.99632 1.22437 0.95309 0.97422 1.00256 1.22890 0.96861 1.01313 1.00470 1.23165 1.05703 1.03219 0.91198 1.22288 0.92141 1.00710 1.11360 1.19225 0.88487 0.80778 0.75085 1.90953 1.70851 1.26887 1.47675 1.83491 1.43264 1.13753 1.77658 1.18520 0.89031 0.83357 0.97579 0.90903 0.90526 0.90783 0.74505 0.84410 0.83666 0.93370 0.88790 0.98853 0.94721 0.92582 0.92936 0.91909 0.92511 0.87275 0.89220 0.88947 0.88536 0.89542 0.81974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.19 9.58 36.00 0.34 -0.85 16 2 C -0.13 -1.83 5.90 -104.36 -0.62 -2.44 16 3 C 0.16 2.07 6.68 -39.06 -0.26 1.81 16 4 O -0.49 -5.27 12.50 -18.95 -0.24 -5.51 16 5 C -0.16 -2.30 9.91 -39.80 -0.39 -2.69 16 6 C -0.04 -0.56 7.18 -39.57 -0.28 -0.84 16 7 C -0.15 -2.30 5.14 -105.01 -0.54 -2.84 16 8 C 0.06 0.88 5.26 -102.18 -0.54 0.35 16 9 C 0.07 1.08 3.71 -4.98 -0.02 1.06 16 10 N -0.51 -9.06 4.41 -229.52 -1.01 -10.07 16 11 C 0.15 3.12 2.19 -4.97 -0.01 3.11 16 12 C -0.51 -13.24 8.92 -34.44 -0.31 -13.55 16 13 H 0.08 2.38 7.27 -52.49 -0.38 2.00 16 14 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 15 N -0.90 -26.10 13.96 55.43 0.77 -25.33 16 16 Si 0.86 19.63 27.47 -169.99 -4.67 14.96 16 17 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 18 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.26 -5.46 6.54 56.52 0.37 -5.09 16 20 C 0.12 1.91 2.54 -67.71 -0.17 1.74 16 21 H 0.11 2.13 6.50 -51.93 -0.34 1.80 16 22 C -0.19 -2.63 7.08 37.16 0.26 -2.37 16 23 C -0.14 -1.84 4.69 -90.63 -0.42 -2.27 16 24 C -0.18 -2.12 9.92 -26.74 -0.27 -2.38 16 25 C -0.20 -2.18 9.22 -26.73 -0.25 -2.43 16 26 C -0.24 -3.74 9.61 -39.39 -0.38 -4.12 16 27 C 0.51 8.81 7.89 31.78 0.25 9.06 16 28 O -0.47 -9.17 17.91 -19.60 -0.35 -9.52 16 29 O -0.27 -4.48 8.92 -20.83 -0.19 -4.66 16 30 C 0.16 2.50 6.72 -38.48 -0.26 2.25 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.08 0.76 7.52 -51.93 -0.39 0.37 16 33 H 0.07 0.85 7.57 -51.93 -0.39 0.46 16 34 H 0.40 2.66 9.06 45.56 0.41 3.07 16 35 H 0.14 1.71 8.06 -52.49 -0.42 1.29 16 36 H 0.15 2.17 4.89 -52.49 -0.26 1.92 16 37 H 0.05 0.65 5.77 -51.92 -0.30 0.35 16 38 H 0.09 1.19 6.55 -51.93 -0.34 0.85 16 39 H -0.01 -0.12 4.93 -51.93 -0.26 -0.38 16 40 H 0.04 0.75 3.92 -51.93 -0.20 0.54 16 41 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 42 H 0.05 0.65 5.65 -51.93 -0.29 0.36 16 43 H 0.06 1.00 6.59 -51.93 -0.34 0.65 16 44 H 0.06 0.73 7.13 -51.93 -0.37 0.36 16 45 H 0.11 1.57 8.14 -51.93 -0.42 1.14 16 46 H 0.09 0.98 8.14 -51.92 -0.42 0.56 16 47 H 0.09 1.10 7.77 -51.93 -0.40 0.70 16 48 H 0.10 1.04 5.83 -51.93 -0.30 0.74 16 49 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 50 H 0.16 2.20 8.06 -52.48 -0.42 1.78 16 LS Contribution 387.48 15.07 5.84 5.84 Total: -1.00 -30.99 387.48 -9.66 -40.65 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -5.86 Total: 9.24 kcal Atomic # 6 Polarization: -11.64 SS G_CDS: -3.95 Total: -15.59 kcal Atomic # 7 Polarization: -35.16 SS G_CDS: -0.24 Total: -35.40 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: -0.77 Total: -19.69 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -4.67 Total: 14.96 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -30.99 -9.66 -40.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069809420.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.550 kcal (2) G-P(sol) polarization free energy of solvation -30.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds