Wall clock time and date at job start Tue Mar 31 2020 05:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38554 * 120.10999 * 2 1 4 4 O 1.35747 * 119.72709 * 359.97438 * 3 2 1 5 5 C 1.39330 * 120.54533 * 179.97438 * 3 2 1 6 6 C 1.36500 * 120.42832 * 0.02562 * 5 3 2 7 7 C 1.39932 * 119.79439 * 359.68291 * 6 5 3 8 8 C 1.46444 * 120.98817 * 179.71372 * 7 6 5 9 9 C 1.50700 * 120.90475 * 0.62462 * 8 7 6 10 10 N 1.46899 * 109.47224 * 86.60525 * 9 8 7 11 11 C 1.46901 * 111.00420 * 288.32751 * 10 9 8 12 12 C 1.50700 * 109.47126 * 172.07710 * 11 10 9 13 13 H 1.07996 * 120.00018 * 359.97438 * 12 11 10 14 14 C 1.37871 * 119.99571 * 180.02562 * 12 11 10 15 15 N 1.31517 * 119.99771 * 180.02562 * 14 12 11 16 16 Si 1.86796 * 120.00645 * 359.97438 * 14 12 11 17 17 H 1.48505 * 109.47130 * 89.99942 * 16 14 12 18 18 H 1.48498 * 109.47529 * 210.00497 * 16 14 12 19 19 H 1.48510 * 109.46930 * 330.00521 * 16 14 12 20 20 C 1.46896 * 111.00023 * 164.36580 * 10 9 8 21 21 H 1.09000 * 109.46904 * 174.52190 * 20 10 9 22 22 C 1.53005 * 109.46675 * 54.53127 * 20 10 9 23 23 C 1.52997 * 109.47585 * 294.52975 * 20 10 9 24 24 C 1.52993 * 117.49876 * 182.53250 * 23 20 10 25 25 C 1.52998 * 117.49796 * 113.90875 * 23 20 10 26 26 C 1.35840 * 118.18930 * 180.35175 * 8 7 6 27 27 C 1.41002 * 119.83410 * 0.24678 * 26 8 7 28 28 O 1.21798 * 119.15463 * 180.02562 * 27 26 8 29 29 O 1.34227 * 121.69338 * 0.02887 * 27 26 8 30 30 C 1.35032 * 121.45891 * 359.97286 * 29 27 26 31 31 H 1.09004 * 109.46856 * 270.02152 * 1 2 3 32 32 H 1.09005 * 109.47102 * 30.01760 * 1 2 3 33 33 H 1.09003 * 109.47764 * 150.02122 * 1 2 3 34 34 H 0.96700 * 114.00186 * 89.99184 * 4 3 2 35 35 H 1.07994 * 119.78616 * 179.97438 * 5 3 2 36 36 H 1.07996 * 120.10164 * 179.97438 * 6 5 3 37 37 H 1.09007 * 109.46636 * 326.60914 * 9 8 7 38 38 H 1.08994 * 109.46905 * 206.60931 * 9 8 7 39 39 H 1.08999 * 109.46720 * 292.08021 * 11 10 9 40 40 H 1.09000 * 109.46770 * 52.07405 * 11 10 9 41 41 H 0.97005 * 120.00193 * 179.97438 * 15 14 12 42 42 H 1.09000 * 109.46689 * 299.99194 * 22 20 10 43 43 H 1.08998 * 109.47435 * 59.99683 * 22 20 10 44 44 H 1.09000 * 109.46961 * 179.97438 * 22 20 10 45 45 H 1.08999 * 115.55688 * 328.22147 * 23 20 10 46 46 H 1.09009 * 117.49687 * 145.02173 * 24 23 20 47 47 H 1.08999 * 117.50497 * 359.97438 * 24 23 20 48 48 H 1.08996 * 117.50108 * 0.02562 * 25 23 20 49 49 H 1.09006 * 117.49791 * 214.97642 * 25 23 20 50 50 H 1.08003 * 120.08224 * 180.23248 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2020 1.1986 0.0000 4 8 1.5200 2.3722 -0.0005 5 6 3.5953 1.2092 0.0005 6 6 4.2955 0.0375 0.0005 7 6 3.6099 -1.1823 0.0067 8 6 4.3347 -2.4548 0.0006 9 6 5.8414 -2.4873 0.0016 10 7 6.3317 -2.4231 1.3848 11 6 6.1291 -1.0839 1.9537 12 6 6.4610 -1.1070 3.4235 13 1 6.7891 -2.0248 3.8886 14 6 6.3447 0.0433 4.1745 15 7 6.6347 0.0233 5.4572 16 14 5.7765 1.6306 3.3702 17 1 4.2966 1.7246 3.4515 18 1 6.3854 2.7878 4.0739 19 1 6.1956 1.6412 1.9455 20 6 7.7440 -2.8197 1.4617 21 1 8.1084 -2.6706 2.4781 22 6 8.5667 -1.9660 0.4946 23 6 7.8808 -4.2955 1.0821 24 6 9.2762 -4.9182 1.1585 25 6 8.6420 -4.6268 -0.2031 26 6 3.6120 -3.6050 -0.0002 27 6 2.2031 -3.5482 -0.0006 28 8 1.5674 -4.5871 -0.0009 29 8 1.5445 -2.3786 -0.0006 30 6 2.2024 -1.1994 0.0002 31 1 -0.3633 0.0004 1.0277 32 1 -0.3633 0.8899 -0.5141 33 1 -0.3635 -0.8902 -0.5135 34 1 1.3219 2.7125 0.8827 35 1 4.1246 2.1505 0.0001 36 1 5.3754 0.0518 0.0005 37 1 6.2235 -1.6343 -0.5593 38 1 6.1851 -3.4113 -0.4633 39 1 6.7789 -0.3714 1.4456 40 1 5.0891 -0.7862 1.8206 41 1 6.5533 0.8327 5.9856 42 1 8.2023 -2.1151 -0.5218 43 1 8.4693 -0.9145 0.7650 44 1 9.6148 -2.2599 0.5519 45 1 7.0323 -4.9285 1.3419 46 1 9.3458 -5.9609 1.4685 47 1 10.0970 -4.2764 1.4787 48 1 9.0458 -3.7933 -0.7779 49 1 8.2944 -5.4778 -0.7888 50 1 4.1153 -4.5606 -0.0009 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069809420.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:00 Heat of formation + Delta-G solvation = -50.269501 kcal Electronic energy + Delta-G solvation = -33561.162764 eV Core-core repulsion = 29326.928721 eV Total energy + Delta-G solvation = -4234.234042 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 357.177 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.12849 -40.78334 -40.33095 -38.92509 -38.04379 -36.79558 -35.57628 -34.45863 -33.55204 -30.91414 -30.41205 -30.08540 -28.26973 -27.15989 -25.58924 -25.39772 -24.11078 -23.18823 -22.86782 -21.75062 -21.08439 -19.85263 -19.05963 -18.74255 -18.62262 -18.46847 -17.95502 -17.29887 -16.74680 -16.69734 -16.31621 -16.16323 -15.80534 -15.55675 -15.27899 -14.93879 -14.83900 -14.58732 -14.45707 -14.24883 -14.06212 -13.85992 -13.73988 -13.42732 -13.25928 -13.15432 -12.96457 -12.86011 -12.74979 -12.67575 -12.39857 -12.19717 -12.04315 -11.83064 -11.77153 -11.68843 -11.48309 -11.41482 -11.16171 -11.02240 -10.77780 -10.58959 -9.74762 -9.36326 -8.99902 -8.24935 -6.27451 -0.93098 -0.13843 0.34262 1.22213 1.31147 1.35064 1.44035 1.64534 2.35472 2.42686 2.94680 2.96703 3.08275 3.11687 3.15819 3.30468 3.33621 3.72987 3.78314 3.94615 4.00146 4.09330 4.16861 4.21158 4.26824 4.37034 4.43666 4.49471 4.51539 4.54620 4.64856 4.69507 4.72393 4.76924 4.86318 4.87415 4.95459 5.01172 5.04993 5.09617 5.11337 5.14216 5.18402 5.27118 5.36718 5.39000 5.43491 5.48588 5.57998 5.99389 6.00246 6.28460 6.37237 6.64151 6.64400 6.79604 7.34971 8.91538 Molecular weight = 357.18amu Principal moments of inertia in cm(-1) A = 0.007884 B = 0.005086 C = 0.003591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3550.731826 B = 5503.808608 C = 7794.766754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.138 4.138 3 C 0.169 3.831 4 O -0.487 6.487 5 C -0.167 4.167 6 C -0.048 4.048 7 C -0.163 4.163 8 C 0.060 3.940 9 C 0.079 3.921 10 N -0.527 5.527 11 C 0.164 3.836 12 C -0.509 4.509 13 H 0.034 0.966 14 C 0.006 3.994 15 N -0.951 5.951 16 Si 0.926 3.074 17 H -0.263 1.263 18 H -0.291 1.291 19 H -0.227 1.227 20 C 0.120 3.880 21 H 0.059 0.941 22 C -0.179 4.179 23 C -0.155 4.155 24 C -0.179 4.179 25 C -0.168 4.168 26 C -0.250 4.250 27 C 0.511 3.489 28 O -0.508 6.508 29 O -0.276 6.276 30 C 0.140 3.860 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.066 0.934 34 H 0.418 0.582 35 H 0.159 0.841 36 H 0.148 0.852 37 H 0.067 0.933 38 H 0.117 0.883 39 H 0.004 0.996 40 H 0.038 0.962 41 H 0.263 0.737 42 H 0.078 0.922 43 H 0.043 0.957 44 H 0.069 0.931 45 H 0.098 0.902 46 H 0.099 0.901 47 H 0.090 0.910 48 H 0.108 0.892 49 H 0.105 0.895 50 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.799 2.090 -16.504 16.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.140 4.140 3 C 0.123 3.877 4 O -0.302 6.302 5 C -0.186 4.186 6 C -0.065 4.065 7 C -0.164 4.164 8 C 0.059 3.941 9 C -0.048 4.048 10 N -0.250 5.250 11 C 0.037 3.963 12 C -0.548 4.548 13 H 0.052 0.948 14 C -0.191 4.191 15 N -0.592 5.592 16 Si 0.749 3.251 17 H -0.188 1.188 18 H -0.217 1.217 19 H -0.149 1.149 20 C 0.012 3.988 21 H 0.077 0.923 22 C -0.237 4.237 23 C -0.174 4.174 24 C -0.217 4.217 25 C -0.204 4.204 26 C -0.270 4.270 27 C 0.363 3.637 28 O -0.400 6.400 29 O -0.188 6.188 30 C 0.096 3.904 31 H 0.099 0.901 32 H 0.112 0.888 33 H 0.085 0.915 34 H 0.280 0.720 35 H 0.176 0.824 36 H 0.165 0.835 37 H 0.085 0.915 38 H 0.135 0.865 39 H 0.021 0.979 40 H 0.056 0.944 41 H 0.072 0.928 42 H 0.097 0.903 43 H 0.063 0.937 44 H 0.088 0.912 45 H 0.116 0.884 46 H 0.117 0.883 47 H 0.108 0.892 48 H 0.126 0.874 49 H 0.123 0.877 50 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -3.541 1.330 -16.669 17.093 hybrid contribution 0.393 1.071 0.970 1.498 sum -3.149 2.401 -15.699 16.190 Atomic orbital electron populations 1.20610 0.87651 1.04090 1.03573 1.19788 0.98848 0.88862 1.06464 1.18047 0.89255 0.84838 0.95540 1.84649 1.75619 1.34137 1.35761 1.21456 0.93673 0.99942 1.03498 1.21075 1.01190 0.90240 0.94044 1.19218 0.91711 0.95279 1.10218 1.21660 0.97266 0.90455 0.84766 1.21291 0.87520 1.04383 0.91571 1.61984 1.18827 1.28447 1.15775 1.20310 0.96237 0.86413 0.93334 1.21264 1.43762 0.95865 0.93861 0.94777 1.25839 0.95408 1.02755 0.95100 1.70071 1.51298 1.29689 1.08168 0.86023 0.79488 0.78585 0.80992 1.18812 1.21686 1.14931 1.21010 0.86283 0.92555 0.98914 0.92254 1.22493 1.01133 0.99888 1.00188 1.22221 0.96133 0.95468 1.03543 1.22973 0.95510 1.01663 1.01510 1.23240 1.03088 1.03841 0.90255 1.22347 0.91226 1.01555 1.11851 1.19477 0.89071 0.80596 0.74535 1.90925 1.71514 1.27979 1.49606 1.83441 1.43694 1.14087 1.77544 1.18830 0.89422 0.83392 0.98766 0.90092 0.88754 0.91467 0.72030 0.82372 0.83468 0.91543 0.86508 0.97883 0.94396 0.92794 0.90310 0.93749 0.91185 0.88371 0.88253 0.89194 0.87429 0.87693 0.80597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.10 9.58 71.23 0.68 -1.42 16 2 C -0.14 -3.52 5.90 -19.69 -0.12 -3.64 16 3 C 0.17 3.87 6.68 22.61 0.15 4.02 16 4 O -0.49 -8.44 12.50 -90.72 -1.13 -9.57 16 5 C -0.17 -4.04 9.91 22.13 0.22 -3.82 16 6 C -0.05 -1.30 7.18 22.27 0.16 -1.14 16 7 C -0.16 -4.87 5.14 -20.11 -0.10 -4.97 16 8 C 0.06 1.76 5.26 -18.28 -0.10 1.67 16 9 C 0.08 2.12 3.71 85.56 0.32 2.44 16 10 N -0.53 -18.53 4.41 -880.07 -3.88 -22.42 16 11 C 0.16 6.77 2.19 85.56 0.19 6.96 16 12 C -0.51 -27.47 8.92 25.60 0.23 -27.24 16 13 H 0.03 2.11 7.27 -2.91 -0.02 2.09 16 14 C 0.01 0.32 5.47 84.65 0.46 0.78 16 15 N -0.95 -57.93 13.96 21.45 0.30 -57.63 16 16 Si 0.93 39.74 27.47 68.60 1.88 41.62 16 17 H -0.26 -10.75 7.11 99.48 0.71 -10.05 16 18 H -0.29 -12.65 7.11 99.48 0.71 -11.95 16 19 H -0.23 -8.24 6.54 99.48 0.65 -7.59 16 20 C 0.12 3.91 2.54 44.92 0.11 4.02 16 21 H 0.06 2.49 6.50 -2.39 -0.02 2.48 16 22 C -0.18 -4.71 7.08 71.98 0.51 -4.20 16 23 C -0.15 -4.07 4.69 -10.80 -0.05 -4.12 16 24 C -0.18 -4.00 9.92 30.59 0.30 -3.70 16 25 C -0.17 -3.19 9.22 30.59 0.28 -2.91 16 26 C -0.25 -7.49 9.61 22.39 0.22 -7.28 16 27 C 0.51 17.62 7.89 68.50 0.54 18.16 16 28 O -0.51 -20.02 17.91 18.96 0.34 -19.69 16 29 O -0.28 -9.13 8.92 14.55 0.13 -9.00 16 30 C 0.14 4.23 6.72 22.98 0.15 4.38 16 31 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 32 H 0.09 1.58 7.52 -2.38 -0.02 1.56 16 33 H 0.07 1.47 7.57 -2.39 -0.02 1.45 16 34 H 0.42 3.72 9.06 -74.06 -0.67 3.05 16 35 H 0.16 3.14 8.06 -2.91 -0.02 3.12 16 36 H 0.15 3.90 4.89 -2.91 -0.01 3.89 16 37 H 0.07 1.57 5.77 -2.38 -0.01 1.56 16 38 H 0.12 2.60 6.55 -2.39 -0.02 2.58 16 39 H 0.00 0.15 4.93 -2.39 -0.01 0.13 16 40 H 0.04 1.58 3.92 -2.39 -0.01 1.57 16 41 H 0.26 15.07 8.31 -92.70 -0.77 14.29 16 42 H 0.08 1.65 5.65 -2.39 -0.01 1.64 16 43 H 0.04 1.33 6.59 -2.39 -0.02 1.31 16 44 H 0.07 1.65 7.13 -2.39 -0.02 1.63 16 45 H 0.10 2.80 8.14 -2.39 -0.02 2.78 16 46 H 0.10 2.02 8.14 -2.38 -0.02 2.00 16 47 H 0.09 2.05 7.77 -2.39 -0.02 2.03 16 48 H 0.11 1.85 5.83 -2.39 -0.01 1.84 16 49 H 0.10 1.68 8.14 -2.38 -0.02 1.66 16 50 H 0.18 4.63 8.06 -2.91 -0.02 4.61 16 Total: -1.00 -71.59 387.48 2.08 -69.51 By element: Atomic # 1 Polarization: 28.91 SS G_CDS: 0.28 Total: 29.19 kcal Atomic # 6 Polarization: -26.18 SS G_CDS: 4.16 Total: -22.02 kcal Atomic # 7 Polarization: -76.46 SS G_CDS: -3.59 Total: -80.05 kcal Atomic # 8 Polarization: -37.59 SS G_CDS: -0.67 Total: -38.25 kcal Atomic # 14 Polarization: 39.74 SS G_CDS: 1.88 Total: 41.62 kcal Total: -71.59 2.08 -69.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069809420.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.242 kcal (2) G-P(sol) polarization free energy of solvation -71.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds