Wall clock time and date at job start Tue Mar 31 2020 05:21:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35896 * 117.00083 * 2 1 4 4 C 1.38757 * 120.05426 * 0.29963 * 3 2 1 5 5 C 1.38119 * 119.94413 * 180.21111 * 4 3 2 6 6 C 1.38288 * 120.05366 * 359.50981 * 5 4 3 7 7 C 1.38240 * 120.11591 * 0.24016 * 6 5 4 8 8 C 1.50696 * 119.97662 * 180.02562 * 7 6 5 9 9 H 1.09005 * 109.47444 * 199.99976 * 8 7 6 10 10 C 1.53000 * 109.47416 * 79.99933 * 8 7 6 11 11 N 1.46898 * 109.46996 * 319.99598 * 8 7 6 12 12 C 1.46955 * 110.99974 * 303.80189 * 11 8 7 13 13 C 1.53048 * 109.36462 * 176.81261 * 12 11 8 14 14 N 1.46964 * 109.36717 * 58.39795 * 13 12 11 15 15 C 1.46898 * 111.00197 * 176.81238 * 14 13 12 16 16 C 1.52999 * 109.47037 * 293.80199 * 15 14 13 17 17 H 1.08995 * 109.47224 * 54.99978 * 16 15 14 18 18 C 1.47202 * 109.47252 * 294.99945 * 16 15 14 19 19 N 9.43028 * 137.18399 * 76.46556 * 3 1 2 20 20 C 1.52999 * 109.47138 * 174.99914 * 16 15 14 21 21 C 1.50697 * 109.47518 * 184.99953 * 20 16 15 22 22 H 1.08003 * 119.99754 * 0.02562 * 21 20 16 23 23 C 1.37878 * 120.00490 * 179.97438 * 21 20 16 24 24 N 1.31513 * 120.00026 * 179.97438 * 23 21 20 25 25 Si 1.86799 * 119.99736 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.47262 * 89.99820 * 25 23 21 27 27 H 1.48497 * 109.47183 * 209.99950 * 25 23 21 28 28 H 1.48505 * 109.47261 * 329.99809 * 25 23 21 29 29 C 1.46951 * 110.87852 * 300.68417 * 14 13 12 30 30 C 1.46955 * 111.00051 * 180.02562 * 11 8 7 31 31 C 1.38171 * 120.05202 * 359.97438 * 7 6 5 32 32 H 1.09000 * 109.47473 * 60.00460 * 1 2 3 33 33 H 1.09007 * 109.46894 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.47190 * 299.99904 * 1 2 3 35 35 H 1.07998 * 120.02597 * 359.97438 * 4 3 2 36 36 H 1.08002 * 119.97592 * 179.79533 * 5 4 3 37 37 H 1.08006 * 119.94478 * 180.25913 * 6 5 4 38 38 H 1.08998 * 109.47338 * 59.99984 * 10 8 7 39 39 H 1.09000 * 109.47146 * 180.02562 * 10 8 7 40 40 H 1.09003 * 109.46562 * 299.99685 * 10 8 7 41 41 H 1.09002 * 109.48655 * 296.77317 * 12 11 8 42 42 H 1.08996 * 109.49078 * 56.84516 * 12 11 8 43 43 H 1.09004 * 109.49011 * 298.43234 * 13 12 11 44 44 H 1.09004 * 109.48990 * 178.36656 * 13 12 11 45 45 H 1.09002 * 109.47048 * 53.79539 * 15 14 13 46 46 H 1.08998 * 109.47234 * 173.79874 * 15 14 13 47 47 H 1.09005 * 109.47268 * 304.99828 * 20 16 15 48 48 H 1.09006 * 109.47201 * 64.99550 * 20 16 15 49 49 H 0.97005 * 119.99672 * 180.02562 * 24 23 21 50 50 H 1.09003 * 109.48815 * 299.34860 * 29 14 13 51 51 H 1.09005 * 109.48814 * 179.28655 * 29 14 13 52 52 H 1.09004 * 109.48801 * 303.15610 * 30 11 8 53 53 H 1.09003 * 109.49258 * 63.22014 * 30 11 8 54 54 H 1.07997 * 120.02798 * 180.02562 * 31 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 0.0063 5 6 1.9208 3.6047 0.0019 6 6 3.3018 3.6757 0.0014 7 6 4.0560 2.5171 0.0004 8 6 5.5607 2.5982 0.0005 9 1 5.9756 1.6537 -0.3518 10 6 6.0566 2.8745 1.4213 11 7 5.9926 3.6847 -0.8888 12 6 5.4579 3.4992 -2.2450 13 6 5.8633 4.6894 -3.1176 14 7 7.3287 4.7985 -3.1427 15 6 7.7605 5.8850 -4.0320 16 6 7.4001 5.5349 -5.4771 17 1 6.3342 5.3170 -5.5431 18 6 8.1695 4.3543 -5.9026 19 7 8.7630 3.4431 -6.2313 20 6 7.7361 6.7178 -6.3875 21 6 7.2691 6.4215 -7.7893 22 1 6.7810 5.4835 -8.0088 23 6 7.4639 7.3484 -8.7913 24 7 7.0567 7.0895 -10.0147 25 14 8.3074 8.9712 -8.4113 26 1 9.7727 8.8242 -8.6029 27 1 7.7919 10.0227 -9.3243 28 1 8.0284 9.3567 -7.0046 29 6 7.8634 4.9839 -1.7865 30 6 7.4579 3.7933 -0.9144 31 6 3.4311 1.2848 0.0003 32 1 -0.3634 0.5137 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3633 0.5138 0.8900 35 1 0.2128 2.3203 0.0108 36 1 1.3339 4.5114 0.0034 37 1 3.7922 4.6381 0.0022 38 1 5.7361 2.0683 2.0812 39 1 7.1450 2.9335 1.4213 40 1 5.6418 3.8190 1.7735 41 1 5.8609 2.5811 -2.6724 42 1 4.3707 3.4339 -2.2015 43 1 5.4376 5.6043 -2.7053 44 1 5.4923 4.5401 -4.1316 45 1 7.2589 6.8096 -3.7462 46 1 8.8394 6.0161 -3.9481 47 1 7.2353 7.6133 -6.0194 48 1 8.8141 6.8796 -6.3901 49 1 7.1941 7.7415 -10.7197 50 1 7.4603 5.9021 -1.3591 51 1 8.9506 5.0493 -1.8300 52 1 7.8293 3.9425 0.0995 53 1 7.8834 2.8785 -1.3269 54 1 4.0206 0.3799 0.0000 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069845054.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:43 Heat of formation + Delta-G solvation = 6.830182 kcal Electronic energy + Delta-G solvation = -31779.881061 eV Core-core repulsion = 27716.248893 eV Total energy + Delta-G solvation = -4063.632168 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 357.216 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.34873 -40.44923 -39.03047 -37.97481 -36.56342 -35.42150 -33.98672 -32.66875 -32.05257 -31.44612 -30.01383 -29.07547 -28.11175 -26.92411 -24.72336 -24.11793 -23.47287 -23.42063 -23.00745 -21.35548 -20.61027 -18.92413 -18.69656 -18.22490 -17.59776 -17.06576 -16.76745 -16.63589 -16.31242 -16.06723 -15.82351 -15.78269 -15.61998 -15.34184 -15.07623 -14.82623 -14.51968 -14.40361 -14.33226 -13.96657 -13.85421 -13.80888 -13.52751 -13.28012 -13.14819 -13.08336 -12.85420 -12.75076 -12.69626 -12.56473 -12.31125 -12.28378 -12.15585 -12.04216 -11.84505 -11.80846 -11.73317 -11.66282 -11.43050 -11.39214 -11.11917 -10.72776 -9.78087 -9.38506 -9.14576 -9.09074 -8.23735 -6.29447 0.35431 0.53875 1.44341 1.45459 1.56621 2.05123 2.12913 2.35093 2.42010 2.76045 2.92575 2.97467 3.12811 3.33280 3.66807 3.90548 3.94695 3.99002 4.15232 4.18775 4.23684 4.29750 4.31973 4.34729 4.38355 4.46199 4.49212 4.52538 4.58013 4.58849 4.60115 4.67051 4.71704 4.73482 4.79475 4.86392 4.88510 4.93821 5.01139 5.01777 5.08735 5.10719 5.18681 5.25779 5.35314 5.36792 5.45134 5.54975 5.64216 5.65720 5.84506 6.02789 6.03890 6.21118 6.25090 6.28977 6.47608 6.77876 6.91000 7.34811 8.93250 Molecular weight = 357.22amu Principal moments of inertia in cm(-1) A = 0.012800 B = 0.002103 C = 0.001962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2186.991612 B =13309.914933 C =14267.944169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.341 6.341 3 C 0.110 3.890 4 C -0.213 4.213 5 C -0.085 4.085 6 C -0.133 4.133 7 C -0.042 4.042 8 C 0.122 3.878 9 H 0.039 0.961 10 C -0.134 4.134 11 N -0.522 5.522 12 C 0.064 3.936 13 C 0.057 3.943 14 N -0.561 5.561 15 C 0.072 3.928 16 C 0.025 3.975 17 H 0.110 0.890 18 C 0.264 3.736 19 N -0.518 5.518 20 C -0.002 4.002 21 C -0.530 4.530 22 H 0.026 0.974 23 C 0.001 3.999 24 N -0.955 5.955 25 Si 0.949 3.051 26 H -0.277 1.277 27 H -0.290 1.290 28 H -0.221 1.221 29 C 0.062 3.938 30 C 0.057 3.943 31 C -0.167 4.167 32 H 0.061 0.939 33 H 0.115 0.885 34 H 0.066 0.934 35 H 0.144 0.856 36 H 0.146 0.854 37 H 0.137 0.863 38 H 0.064 0.936 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.016 0.984 42 H 0.082 0.918 43 H 0.058 0.942 44 H 0.072 0.928 45 H 0.080 0.920 46 H 0.087 0.913 47 H 0.065 0.935 48 H 0.027 0.973 49 H 0.264 0.736 50 H 0.056 0.944 51 H 0.085 0.915 52 H 0.104 0.896 53 H 0.024 0.976 54 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.857 -4.871 31.228 33.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.256 6.256 3 C 0.065 3.935 4 C -0.232 4.232 5 C -0.103 4.103 6 C -0.151 4.151 7 C -0.043 4.043 8 C 0.013 3.987 9 H 0.057 0.943 10 C -0.192 4.192 11 N -0.247 5.247 12 C -0.064 4.064 13 C -0.071 4.071 14 N -0.286 5.286 15 C -0.056 4.056 16 C 0.003 3.997 17 H 0.127 0.873 18 C -0.052 4.052 19 N -0.195 5.195 20 C -0.041 4.041 21 C -0.568 4.568 22 H 0.044 0.956 23 C -0.195 4.195 24 N -0.596 5.596 25 Si 0.772 3.228 26 H -0.202 1.202 27 H -0.216 1.216 28 H -0.143 1.143 29 C -0.066 4.066 30 C -0.071 4.071 31 C -0.186 4.186 32 H 0.080 0.920 33 H 0.134 0.866 34 H 0.085 0.915 35 H 0.162 0.838 36 H 0.163 0.837 37 H 0.155 0.845 38 H 0.083 0.917 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.035 0.965 42 H 0.101 0.899 43 H 0.076 0.924 44 H 0.090 0.910 45 H 0.098 0.902 46 H 0.105 0.895 47 H 0.083 0.917 48 H 0.045 0.955 49 H 0.073 0.927 50 H 0.074 0.926 51 H 0.103 0.897 52 H 0.123 0.877 53 H 0.042 0.958 54 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -9.893 -6.390 30.596 32.784 hybrid contribution -0.240 0.393 -1.034 1.132 sum -10.134 -5.997 29.562 31.821 Atomic orbital electron populations 1.23305 0.76557 1.05381 1.02190 1.86033 1.23401 1.27233 1.88893 1.19127 0.92361 0.84801 0.97184 1.21483 1.00943 0.92125 1.08614 1.21275 0.94771 0.97661 0.96625 1.21073 0.93472 0.98623 1.01964 1.19557 0.94943 0.92269 0.97528 1.20531 0.90487 0.92568 0.95068 0.94346 1.21823 1.01628 1.02755 0.92968 1.62267 1.10184 1.43581 1.08674 1.22070 0.99954 0.96355 0.88046 1.22188 0.87393 0.98063 0.99492 1.62097 1.10557 1.45442 1.10540 1.22100 1.02111 0.93118 0.88308 1.19106 0.98203 0.86933 0.95465 0.87278 1.29436 0.92277 0.93422 0.90080 1.80990 1.12421 1.14049 1.12055 1.19590 0.97663 0.94380 0.92457 1.21388 1.38413 1.02818 0.94175 0.95559 1.26070 0.95970 1.03056 0.94452 1.70097 1.49276 1.37624 1.02554 0.85683 0.78347 0.78071 0.80718 1.20242 1.21593 1.14342 1.22159 1.00118 0.97573 0.86714 1.22259 0.86904 0.97222 1.00679 1.20355 0.91876 0.98296 1.08074 0.92029 0.86643 0.91504 0.83828 0.83673 0.84539 0.91713 0.91068 0.91241 0.96532 0.89925 0.92402 0.90983 0.90221 0.89458 0.91703 0.95469 0.92687 0.92622 0.89652 0.87748 0.95757 0.86013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.32 16 2 O -0.34 -6.53 10.50 -92.38 -0.97 -7.50 16 3 C 0.11 2.17 6.69 22.51 0.15 2.32 16 4 C -0.21 -3.42 9.04 22.37 0.20 -3.22 16 5 C -0.09 -1.30 10.04 22.25 0.22 -1.07 16 6 C -0.13 -2.24 8.11 22.28 0.18 -2.06 16 7 C -0.04 -0.78 3.73 -19.88 -0.07 -0.85 16 8 C 0.12 2.08 2.27 44.17 0.10 2.18 16 9 H 0.04 0.75 8.00 -2.38 -0.02 0.73 16 10 C -0.13 -1.74 8.94 71.98 0.64 -1.10 16 11 N -0.52 -9.47 3.91 -874.88 -3.42 -12.90 16 12 C 0.06 1.41 5.20 86.31 0.45 1.86 16 13 C 0.06 1.28 5.42 86.31 0.47 1.75 16 14 N -0.56 -13.34 4.41 -895.70 -3.95 -17.29 16 15 C 0.07 1.78 4.32 86.30 0.37 2.16 16 16 C 0.02 0.85 2.14 -12.60 -0.03 0.82 16 17 H 0.11 3.66 6.28 -2.39 -0.02 3.65 16 18 C 0.26 11.05 13.67 89.44 1.22 12.27 16 19 N -0.52 -24.25 18.54 20.01 0.37 -23.88 16 20 C 0.00 -0.08 3.49 29.85 0.10 0.03 16 21 C -0.53 -28.82 9.15 25.60 0.23 -28.58 16 22 H 0.03 1.63 7.84 -2.91 -0.02 1.60 16 23 C 0.00 0.06 5.47 84.66 0.46 0.52 16 24 N -0.95 -59.51 13.96 21.45 0.30 -59.21 16 25 Si 0.95 41.44 27.47 68.60 1.88 43.33 16 26 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 27 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 28 H -0.22 -8.13 6.54 99.48 0.65 -7.48 16 29 C 0.06 1.14 5.61 86.31 0.48 1.62 16 30 C 0.06 1.00 5.32 86.31 0.46 1.46 16 31 C -0.17 -3.38 9.61 22.37 0.21 -3.16 16 32 H 0.06 0.56 7.68 -2.39 -0.02 0.54 16 33 H 0.12 0.76 8.14 -2.38 -0.02 0.74 16 34 H 0.07 0.52 7.65 -2.39 -0.02 0.50 16 35 H 0.14 1.64 6.30 -2.91 -0.02 1.62 16 36 H 0.15 1.53 8.06 -2.91 -0.02 1.51 16 37 H 0.14 2.19 7.71 -2.91 -0.02 2.17 16 38 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.07 0.79 6.34 -2.39 -0.02 0.77 16 40 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.02 0.44 8.14 -2.39 -0.02 0.42 16 42 H 0.08 1.81 6.05 -2.39 -0.01 1.79 16 43 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 44 H 0.07 1.82 6.25 -2.39 -0.01 1.80 16 45 H 0.08 1.61 8.12 -2.39 -0.02 1.60 16 46 H 0.09 2.06 8.02 -2.39 -0.02 2.04 16 47 H 0.06 2.32 7.20 -2.38 -0.02 2.30 16 48 H 0.03 1.08 7.57 -2.38 -0.02 1.06 16 49 H 0.26 15.43 8.31 -92.70 -0.77 14.66 16 50 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 51 H 0.09 1.46 8.07 -2.38 -0.02 1.44 16 52 H 0.10 1.36 6.14 -2.39 -0.01 1.35 16 53 H 0.02 0.52 8.14 -2.39 -0.02 0.50 16 54 H 0.12 2.44 8.04 -2.91 -0.02 2.41 16 Total: -1.00 -73.13 424.18 2.02 -71.11 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: 0.82 Total: 18.09 kcal Atomic # 6 Polarization: -18.73 SS G_CDS: 6.98 Total: -11.75 kcal Atomic # 7 Polarization: -106.57 SS G_CDS: -6.70 Total: -113.28 kcal Atomic # 8 Polarization: -6.53 SS G_CDS: -0.97 Total: -7.50 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 1.88 Total: 43.33 kcal Total: -73.13 2.02 -71.11 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069845054.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.940 kcal (2) G-P(sol) polarization free energy of solvation -73.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds