Wall clock time and date at job start Tue Mar 31 2020 05:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35898 * 117.00468 * 2 1 4 4 C 1.38759 * 120.05015 * 0.02562 * 3 2 1 5 5 C 1.38125 * 119.94136 * 179.97438 * 4 3 2 6 6 C 1.38298 * 120.05376 * 359.74911 * 5 4 3 7 7 C 1.38241 * 120.11146 * 0.50787 * 6 5 4 8 8 C 1.50696 * 119.97055 * 179.77069 * 7 6 5 9 9 H 1.09000 * 109.47543 * 166.42890 * 8 7 6 10 10 C 1.52996 * 109.47010 * 286.42650 * 8 7 6 11 11 N 1.46899 * 109.47424 * 46.42654 * 8 7 6 12 12 C 1.46952 * 111.00230 * 56.62002 * 11 8 7 13 13 C 1.53047 * 109.36680 * 183.19238 * 12 11 8 14 14 N 1.46957 * 109.36286 * 301.59546 * 13 12 11 15 15 C 1.46905 * 110.99879 * 183.18963 * 14 13 12 16 16 C 1.53000 * 109.46965 * 170.00412 * 15 14 13 17 17 H 1.09005 * 109.47399 * 54.99580 * 16 15 14 18 18 C 1.47201 * 109.47079 * 295.00075 * 16 15 14 19 19 N 9.79328 * 141.73380 * 294.44115 * 3 1 2 20 20 C 1.52994 * 109.47265 * 175.00058 * 16 15 14 21 21 C 1.50703 * 109.47274 * 184.99949 * 20 16 15 22 22 H 1.07999 * 120.00174 * 359.97438 * 21 20 16 23 23 C 1.37877 * 119.99852 * 179.72334 * 21 20 16 24 24 N 1.31514 * 120.00127 * 0.27406 * 23 21 20 25 25 Si 1.86798 * 119.99941 * 180.27528 * 23 21 20 26 26 H 1.48498 * 109.47436 * 59.99704 * 25 23 21 27 27 H 1.48506 * 109.47323 * 179.97438 * 25 23 21 28 28 H 1.48505 * 109.46914 * 299.99902 * 25 23 21 29 29 C 1.46961 * 110.88012 * 59.32393 * 14 13 12 30 30 C 1.46958 * 111.00101 * 180.42254 * 11 8 7 31 31 C 1.38158 * 120.05416 * 359.48748 * 7 6 5 32 32 H 1.09004 * 109.47292 * 300.00143 * 1 2 3 33 33 H 1.09005 * 109.47233 * 59.99907 * 1 2 3 34 34 H 1.09002 * 109.47425 * 180.02562 * 1 2 3 35 35 H 1.07999 * 120.03185 * 359.95845 * 4 3 2 36 36 H 1.08003 * 119.97490 * 180.02562 * 5 4 3 37 37 H 1.08002 * 119.93911 * 180.27300 * 6 5 4 38 38 H 1.09005 * 109.47459 * 299.99954 * 10 8 7 39 39 H 1.08999 * 109.47554 * 60.00257 * 10 8 7 40 40 H 1.09002 * 109.47265 * 180.02562 * 10 8 7 41 41 H 1.09005 * 109.48787 * 63.22199 * 12 11 8 42 42 H 1.09008 * 109.50886 * 303.16890 * 12 11 8 43 43 H 1.09008 * 109.49055 * 181.63562 * 13 12 11 44 44 H 1.08998 * 109.49379 * 61.56828 * 13 12 11 45 45 H 1.08994 * 109.47240 * 50.00128 * 15 14 13 46 46 H 1.09004 * 109.46743 * 289.99986 * 15 14 13 47 47 H 1.08999 * 109.47178 * 64.99404 * 20 16 15 48 48 H 1.09004 * 109.47043 * 304.99916 * 20 16 15 49 49 H 0.97000 * 120.00275 * 180.02562 * 24 23 21 50 50 H 1.08998 * 109.48561 * 60.64477 * 29 14 13 51 51 H 1.08995 * 109.48906 * 180.71397 * 29 14 13 52 52 H 1.08998 * 109.48560 * 296.77414 * 30 11 8 53 53 H 1.09003 * 109.48862 * 56.82246 * 30 11 8 54 54 H 1.08006 * 120.02735 * 180.23456 * 31 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9209 3.6047 0.0011 6 6 3.3020 3.6757 0.0063 7 6 4.0560 2.5170 0.0004 8 6 5.5608 2.5980 0.0009 9 1 5.9774 1.6188 0.2371 10 6 6.0482 3.0398 -1.3804 11 7 5.9984 3.5725 1.0094 12 6 5.4800 3.2230 2.3392 13 6 5.8905 4.3023 3.3437 14 7 7.3555 4.4155 3.3658 15 6 7.7931 5.3900 4.3743 16 6 9.3110 5.3013 4.5442 17 1 9.7934 5.4319 3.5755 18 6 9.6669 3.9837 5.0957 19 7 9.9413 2.9672 5.5216 20 6 9.7821 6.3986 5.5006 21 6 11.2874 6.3899 5.5728 22 1 11.8516 5.6732 4.9946 23 6 11.9445 7.3004 6.3729 24 7 11.2574 8.1730 7.0773 25 14 13.8106 7.2947 6.4564 26 1 14.3675 7.5400 5.1018 27 1 14.2681 8.3638 7.3801 28 1 14.2798 5.9763 6.9532 29 6 7.8740 4.7650 2.0359 30 6 7.4635 3.6856 1.0314 31 6 3.4311 1.2848 0.0000 32 1 -0.3634 0.5139 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 -0.3634 -1.0277 0.0005 35 1 0.2128 2.3204 0.0003 36 1 1.3341 4.5114 0.0019 37 1 3.7923 4.6380 0.0112 38 1 5.7235 2.3168 -2.1287 39 1 5.6317 4.0191 -1.6166 40 1 7.1366 3.0980 -1.3802 41 1 5.8916 2.2624 2.6491 42 1 4.3926 3.1572 2.3003 43 1 5.5317 4.0306 4.3365 44 1 5.4563 5.2577 3.0488 45 1 7.3076 5.1714 5.3254 46 1 7.5218 6.3947 4.0503 47 1 9.3697 6.2171 6.4931 48 1 9.4413 7.3681 5.1373 49 1 11.7197 8.8138 7.6399 50 1 7.4624 5.7255 1.7261 51 1 8.9613 4.8305 2.0752 52 1 7.8975 2.7303 1.3265 53 1 7.8222 3.9570 0.0386 54 1 4.0206 0.3798 -0.0008 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069845056.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:47 Heat of formation + Delta-G solvation = 4.409839 kcal Electronic energy + Delta-G solvation = -31585.264640 eV Core-core repulsion = 27521.527517 eV Total energy + Delta-G solvation = -4063.737122 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 357.216 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.33806 -40.44678 -39.01385 -37.95383 -36.55850 -35.45599 -33.90763 -32.55041 -31.98136 -31.46675 -29.93392 -28.82936 -28.11825 -26.74127 -25.01019 -24.14365 -23.51765 -23.38532 -23.17582 -21.35172 -20.61646 -18.71647 -18.53230 -18.14891 -17.54529 -17.05531 -16.77043 -16.64097 -16.48499 -16.03689 -15.86131 -15.77246 -15.63205 -15.42102 -15.05149 -14.56874 -14.49525 -14.34743 -14.22458 -14.06477 -13.76863 -13.74957 -13.44677 -13.23172 -13.14663 -13.00948 -12.87262 -12.75409 -12.57360 -12.53859 -12.43392 -12.31711 -12.26985 -12.16549 -12.05856 -11.87940 -11.69914 -11.65002 -11.43151 -11.28729 -11.03692 -10.53453 -9.78689 -9.38399 -9.16245 -9.09717 -8.17944 -6.26127 0.35273 0.53980 1.41875 1.43602 1.50556 2.06977 2.14750 2.35535 2.42509 2.74675 2.93632 2.98901 3.17389 3.36294 3.67014 3.90375 3.93967 4.02739 4.14119 4.18000 4.24191 4.28357 4.34296 4.36099 4.39049 4.46559 4.49708 4.53622 4.56439 4.58654 4.61684 4.71682 4.73720 4.74593 4.79357 4.86833 4.90796 4.96849 5.00625 5.02659 5.09699 5.10930 5.18393 5.35698 5.36597 5.47903 5.54904 5.62903 5.66976 5.80267 5.84290 6.00622 6.04045 6.17947 6.24097 6.25677 6.48083 6.84148 6.94095 7.42198 8.92627 Molecular weight = 357.22amu Principal moments of inertia in cm(-1) A = 0.022396 B = 0.001766 C = 0.001751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.925195 B =15848.279580 C =15989.108814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.342 6.342 3 C 0.111 3.889 4 C -0.212 4.212 5 C -0.084 4.084 6 C -0.132 4.132 7 C -0.040 4.040 8 C 0.121 3.879 9 H 0.039 0.961 10 C -0.137 4.137 11 N -0.523 5.523 12 C 0.066 3.934 13 C 0.063 3.937 14 N -0.557 5.557 15 C 0.075 3.925 16 C 0.022 3.978 17 H 0.117 0.883 18 C 0.267 3.733 19 N -0.516 5.516 20 C 0.039 3.961 21 C -0.539 4.539 22 H 0.053 0.947 23 C 0.012 3.988 24 N -0.922 5.922 25 Si 0.948 3.052 26 H -0.262 1.262 27 H -0.282 1.282 28 H -0.282 1.282 29 C 0.053 3.947 30 C 0.059 3.941 31 C -0.166 4.166 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.115 0.885 35 H 0.145 0.855 36 H 0.146 0.854 37 H 0.134 0.866 38 H 0.065 0.935 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.021 0.979 42 H 0.084 0.916 43 H 0.076 0.924 44 H 0.052 0.948 45 H 0.075 0.925 46 H 0.070 0.930 47 H 0.000 1.000 48 H 0.036 0.964 49 H 0.264 0.736 50 H 0.054 0.946 51 H 0.081 0.919 52 H 0.025 0.975 53 H 0.102 0.898 54 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.967 -8.909 -20.678 32.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.256 6.256 3 C 0.066 3.934 4 C -0.230 4.230 5 C -0.102 4.102 6 C -0.151 4.151 7 C -0.041 4.041 8 C 0.013 3.987 9 H 0.057 0.943 10 C -0.194 4.194 11 N -0.248 5.248 12 C -0.062 4.062 13 C -0.064 4.064 14 N -0.282 5.282 15 C -0.054 4.054 16 C 0.000 4.000 17 H 0.135 0.865 18 C -0.049 4.049 19 N -0.194 5.194 20 C 0.000 4.000 21 C -0.577 4.577 22 H 0.072 0.928 23 C -0.187 4.187 24 N -0.562 5.562 25 Si 0.773 3.227 26 H -0.187 1.187 27 H -0.207 1.207 28 H -0.208 1.208 29 C -0.075 4.075 30 C -0.068 4.068 31 C -0.185 4.185 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.133 0.867 35 H 0.163 0.837 36 H 0.164 0.836 37 H 0.152 0.848 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.039 0.961 42 H 0.102 0.898 43 H 0.095 0.905 44 H 0.070 0.930 45 H 0.093 0.907 46 H 0.088 0.912 47 H 0.019 0.981 48 H 0.054 0.946 49 H 0.073 0.927 50 H 0.072 0.928 51 H 0.100 0.900 52 H 0.044 0.956 53 H 0.120 0.880 54 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -23.457 -10.500 -19.927 32.520 hybrid contribution 0.864 0.328 0.538 1.069 sum -22.593 -10.172 -19.389 31.462 Atomic orbital electron populations 1.23307 0.76527 1.05378 1.02229 1.86036 1.23429 1.27239 1.88886 1.19113 0.92293 0.84808 0.97153 1.21481 1.00950 0.92047 1.08558 1.21265 0.94651 0.97691 0.96611 1.21050 0.93552 0.98494 1.01997 1.19507 0.94736 0.92285 0.97549 1.20536 0.90603 0.93754 0.93761 0.94269 1.21843 1.01617 1.02396 0.93550 1.62263 1.10276 1.47310 1.04997 1.22051 0.99917 0.96111 0.88102 1.22098 0.86725 0.98560 0.99058 1.62142 1.11023 1.48787 1.06269 1.22015 0.92093 0.95180 0.96081 1.19208 0.96547 0.83845 1.00397 0.86534 1.29356 0.90395 0.93874 0.91260 1.80966 1.11788 1.14840 1.11809 1.18983 0.94797 0.92890 0.93326 1.21509 0.93210 1.16394 1.26602 0.92844 1.25700 1.02495 0.95277 0.95227 1.70023 1.37108 1.20050 1.29026 0.85763 0.80964 0.77324 0.78599 1.18680 1.20739 1.20832 1.22265 1.00380 0.97534 0.87308 1.22221 0.87023 0.97606 0.99991 1.20363 0.91918 0.98219 1.08033 0.91865 0.91572 0.86684 0.83731 0.83644 0.84816 0.91618 0.91208 0.91331 0.96102 0.89787 0.90543 0.93013 0.90690 0.91160 0.98132 0.94579 0.92735 0.92768 0.90044 0.95649 0.87970 0.86107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 113.37 1.11 1.29 16 2 O -0.34 -6.13 10.50 -92.41 -0.97 -7.10 16 3 C 0.11 2.06 6.69 22.51 0.15 2.21 16 4 C -0.21 -3.11 9.04 22.37 0.20 -2.91 16 5 C -0.08 -1.18 10.04 22.26 0.22 -0.96 16 6 C -0.13 -2.14 8.45 22.28 0.19 -1.96 16 7 C -0.04 -0.72 3.52 -19.88 -0.07 -0.79 16 8 C 0.12 2.13 2.27 44.17 0.10 2.23 16 9 H 0.04 0.77 7.93 -2.39 -0.02 0.75 16 10 C -0.14 -1.93 8.88 71.98 0.64 -1.29 16 11 N -0.52 -9.99 4.10 -874.87 -3.59 -13.58 16 12 C 0.07 1.42 5.27 86.31 0.45 1.87 16 13 C 0.06 1.42 5.61 86.31 0.48 1.90 16 14 N -0.56 -14.45 4.41 -895.69 -3.95 -18.41 16 15 C 0.08 2.16 4.32 86.30 0.37 2.53 16 16 C 0.02 0.79 2.14 -12.60 -0.03 0.76 16 17 H 0.12 3.85 6.28 -2.38 -0.01 3.84 16 18 C 0.27 11.22 13.67 89.44 1.22 12.44 16 19 N -0.52 -23.81 18.54 20.00 0.37 -23.44 16 20 C 0.04 1.79 4.42 29.85 0.13 1.92 16 21 C -0.54 -28.55 8.60 25.60 0.22 -28.33 16 22 H 0.05 2.80 7.59 -2.91 -0.02 2.78 16 23 C 0.01 0.66 5.46 84.65 0.46 1.12 16 24 N -0.92 -52.88 13.29 21.45 0.28 -52.59 16 25 Si 0.95 43.44 29.54 68.60 2.03 45.46 16 26 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 27 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 28 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 29 C 0.05 1.19 5.42 86.31 0.47 1.66 16 30 C 0.06 1.19 5.31 86.31 0.46 1.65 16 31 C -0.17 -3.23 9.61 22.36 0.21 -3.02 16 32 H 0.06 0.46 7.66 -2.38 -0.02 0.45 16 33 H 0.07 0.44 7.66 -2.38 -0.02 0.42 16 34 H 0.11 0.61 8.14 -2.39 -0.02 0.60 16 35 H 0.15 1.43 6.30 -2.91 -0.02 1.41 16 36 H 0.15 1.35 8.06 -2.91 -0.02 1.33 16 37 H 0.13 2.11 7.91 -2.91 -0.02 2.08 16 38 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 39 H 0.07 0.97 8.06 -2.39 -0.02 0.95 16 40 H 0.07 0.89 6.33 -2.39 -0.02 0.88 16 41 H 0.02 0.52 8.14 -2.38 -0.02 0.51 16 42 H 0.08 1.72 6.37 -2.38 -0.02 1.71 16 43 H 0.08 1.71 8.07 -2.38 -0.02 1.69 16 44 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.07 2.22 8.02 -2.39 -0.02 2.20 16 46 H 0.07 1.82 8.12 -2.38 -0.02 1.80 16 47 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 48 H 0.04 1.67 8.14 -2.38 -0.02 1.65 16 49 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 50 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 51 H 0.08 1.90 6.25 -2.39 -0.01 1.88 16 52 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 53 H 0.10 1.66 6.13 -2.39 -0.01 1.64 16 54 H 0.12 2.36 7.99 -2.91 -0.02 2.33 16 Total: -1.00 -66.25 428.39 2.06 -64.19 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: 0.88 Total: 13.13 kcal Atomic # 6 Polarization: -14.68 SS G_CDS: 7.01 Total: -7.67 kcal Atomic # 7 Polarization: -101.13 SS G_CDS: -6.88 Total: -108.01 kcal Atomic # 8 Polarization: -6.13 SS G_CDS: -0.97 Total: -7.10 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.46 kcal Total: -66.25 2.06 -64.19 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069845056.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.601 kcal (2) G-P(sol) polarization free energy of solvation -66.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds