Wall clock time and date at job start Tue Mar 31 2020 05:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35902 * 116.99340 * 2 1 4 4 C 1.38755 * 120.05656 * 0.29564 * 3 2 1 5 5 C 1.38129 * 119.93789 * 180.20936 * 4 3 2 6 6 C 1.38289 * 120.05636 * 359.51809 * 5 4 3 7 7 C 1.38240 * 120.11423 * 0.23153 * 6 5 4 8 8 C 1.50691 * 119.97254 * 180.02562 * 7 6 5 9 9 H 1.09004 * 109.47419 * 200.00050 * 8 7 6 10 10 C 1.53005 * 109.46987 * 80.00281 * 8 7 6 11 11 N 1.46892 * 109.47576 * 320.00221 * 8 7 6 12 12 C 1.46956 * 110.99799 * 303.80216 * 11 8 7 13 13 C 1.53058 * 109.36554 * 176.81120 * 12 11 8 14 14 N 1.46955 * 109.36542 * 58.39590 * 13 12 11 15 15 C 1.46898 * 111.00134 * 176.81068 * 14 13 12 16 16 C 1.52996 * 109.47695 * 189.88037 * 15 14 13 17 17 H 1.09004 * 109.47012 * 303.83209 * 16 15 14 18 18 C 1.47198 * 109.46798 * 63.82365 * 16 15 14 19 19 N 9.83738 * 144.03908 * 70.24697 * 3 1 2 20 20 C 1.52996 * 109.47478 * 183.82533 * 16 15 14 21 21 C 1.50697 * 109.47033 * 174.99969 * 20 16 15 22 22 H 1.07999 * 120.00281 * 0.02562 * 21 20 16 23 23 C 1.37875 * 120.00000 * 180.02562 * 21 20 16 24 24 N 1.31511 * 119.99961 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00268 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47286 * 89.99803 * 25 23 21 27 27 H 1.48500 * 109.47155 * 209.99971 * 25 23 21 28 28 H 1.48500 * 109.46967 * 330.00021 * 25 23 21 29 29 C 1.46956 * 110.88369 * 300.68346 * 14 13 12 30 30 C 1.46954 * 111.00504 * 180.02562 * 11 8 7 31 31 C 1.38175 * 120.05485 * 359.97438 * 7 6 5 32 32 H 1.08990 * 109.47756 * 60.00556 * 1 2 3 33 33 H 1.09012 * 109.46783 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.47020 * 299.99608 * 1 2 3 35 35 H 1.07989 * 120.02957 * 0.02562 * 4 3 2 36 36 H 1.07999 * 119.96557 * 179.79519 * 5 4 3 37 37 H 1.08003 * 119.93880 * 180.25199 * 6 5 4 38 38 H 1.09004 * 109.46974 * 299.99574 * 10 8 7 39 39 H 1.08994 * 109.47474 * 59.99893 * 10 8 7 40 40 H 1.09009 * 109.47089 * 179.97438 * 10 8 7 41 41 H 1.09006 * 109.48487 * 296.77341 * 12 11 8 42 42 H 1.08997 * 109.49186 * 56.83659 * 12 11 8 43 43 H 1.09001 * 109.48407 * 298.42815 * 13 12 11 44 44 H 1.08996 * 109.50560 * 178.37558 * 13 12 11 45 45 H 1.09002 * 109.46791 * 309.88382 * 15 14 13 46 46 H 1.09000 * 109.46548 * 69.87733 * 15 14 13 47 47 H 1.08995 * 109.46939 * 295.00193 * 20 16 15 48 48 H 1.09002 * 109.46537 * 55.00111 * 20 16 15 49 49 H 0.97005 * 120.00203 * 179.97438 * 24 23 21 50 50 H 1.09006 * 109.48487 * 299.35440 * 29 14 13 51 51 H 1.08997 * 109.49186 * 179.29122 * 29 14 13 52 52 H 1.09000 * 109.48722 * 303.14918 * 30 11 8 53 53 H 1.08996 * 109.49410 * 63.19688 * 30 11 8 54 54 H 1.07992 * 120.02322 * 179.97438 * 31 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2912 2.3753 0.0062 5 6 1.9207 3.6048 0.0018 6 6 3.3017 3.6759 0.0013 7 6 4.0558 2.5173 0.0004 8 6 5.5606 2.5984 0.0004 9 1 5.9754 1.6540 -0.3518 10 6 6.0563 2.8748 1.4213 11 7 5.9925 3.6849 -0.8888 12 6 5.4577 3.4994 -2.2450 13 6 5.8631 4.6897 -3.1177 14 7 7.3284 4.7988 -3.1427 15 6 7.7603 5.8853 -4.0321 16 6 9.2762 5.8134 -4.2263 17 1 9.7690 5.8474 -3.2547 18 6 9.6242 4.5568 -4.9093 19 7 9.8925 3.5867 -5.4369 20 6 9.7385 6.9999 -5.0745 21 6 11.2429 6.9978 -5.1633 22 1 11.8123 6.2272 -4.6651 23 6 11.8924 7.9799 -5.8807 24 7 11.1992 8.9186 -6.4871 25 14 13.7571 7.9770 -5.9915 26 1 14.1818 7.1817 -7.1714 27 1 14.2468 9.3719 -6.1325 28 1 14.3253 7.3752 -4.7585 29 6 7.8632 4.9843 -1.7865 30 6 7.4577 3.7936 -0.9145 31 6 3.4310 1.2849 0.0005 32 1 -0.3634 0.5137 -0.8899 33 1 -0.3633 -1.0278 0.0005 34 1 -0.3633 0.5138 0.8901 35 1 0.2127 2.3203 0.0114 36 1 1.3337 4.5114 0.0033 37 1 3.7919 4.6383 0.0020 38 1 5.6416 3.8193 1.7735 39 1 5.7360 2.0687 2.0812 40 1 7.1449 2.9331 1.4214 41 1 5.8608 2.5812 -2.6724 42 1 4.3706 3.4339 -2.2015 43 1 5.4373 5.6045 -2.7054 44 1 5.4922 4.5407 -4.1317 45 1 7.2650 5.7830 -4.9977 46 1 7.4959 6.8450 -3.5880 47 1 9.3153 6.9176 -6.0756 48 1 9.4030 7.9287 -4.6133 49 1 11.6562 9.6098 -6.9915 50 1 7.4601 5.9025 -1.3592 51 1 8.9503 5.0498 -1.8301 52 1 7.8291 3.9429 0.0994 53 1 7.8832 2.8787 -1.3265 54 1 4.0206 0.3801 -0.0007 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069845060.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:50 Heat of formation + Delta-G solvation = 4.949782 kcal Electronic energy + Delta-G solvation = -31585.664207 eV Core-core repulsion = 27521.950499 eV Total energy + Delta-G solvation = -4063.713709 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 357.216 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.34842 -40.44757 -39.01517 -37.93949 -36.54841 -35.45450 -33.91054 -32.56048 -31.99794 -31.42632 -29.95624 -28.83372 -28.10687 -26.74284 -25.01023 -24.14898 -23.50982 -23.38094 -23.16808 -21.35720 -20.62369 -18.72234 -18.53496 -18.14719 -17.54979 -17.05306 -16.75985 -16.63915 -16.46324 -16.03463 -15.87199 -15.77518 -15.63089 -15.39895 -15.05508 -14.55784 -14.50073 -14.34241 -14.22398 -14.06315 -13.80690 -13.74377 -13.44372 -13.23087 -13.13893 -13.01144 -12.85726 -12.76467 -12.58785 -12.54331 -12.43915 -12.31403 -12.28307 -12.16557 -12.06028 -11.85665 -11.69973 -11.63913 -11.42278 -11.28693 -11.03061 -10.54360 -9.78034 -9.38584 -9.16068 -9.09089 -8.18253 -6.26288 0.35462 0.53881 1.40598 1.43022 1.51940 2.07141 2.14911 2.35371 2.42302 2.75887 2.92777 2.97465 3.17292 3.36844 3.66728 3.90773 3.93962 4.02836 4.14766 4.18860 4.24029 4.28240 4.34487 4.35998 4.39179 4.47061 4.49780 4.54151 4.56791 4.58796 4.61600 4.71258 4.73719 4.75067 4.79392 4.86375 4.90877 4.97204 5.00779 5.02853 5.09660 5.10833 5.18398 5.35401 5.36837 5.48116 5.55154 5.62990 5.66058 5.80315 5.84373 6.01089 6.03882 6.18114 6.24258 6.25885 6.48065 6.84344 6.94501 7.42120 8.92540 Molecular weight = 357.22amu Principal moments of inertia in cm(-1) A = 0.023132 B = 0.001757 C = 0.001741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.144056 B =15935.068302 C =16075.738060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.341 6.341 3 C 0.111 3.889 4 C -0.212 4.212 5 C -0.085 4.085 6 C -0.134 4.134 7 C -0.041 4.041 8 C 0.122 3.878 9 H 0.040 0.960 10 C -0.136 4.136 11 N -0.524 5.524 12 C 0.065 3.935 13 C 0.063 3.937 14 N -0.557 5.557 15 C 0.075 3.925 16 C 0.022 3.978 17 H 0.117 0.883 18 C 0.267 3.733 19 N -0.516 5.516 20 C 0.039 3.961 21 C -0.538 4.538 22 H 0.053 0.947 23 C 0.012 3.988 24 N -0.922 5.922 25 Si 0.947 3.053 26 H -0.285 1.285 27 H -0.278 1.278 28 H -0.264 1.264 29 C 0.053 3.947 30 C 0.060 3.940 31 C -0.166 4.166 32 H 0.063 0.937 33 H 0.115 0.885 34 H 0.065 0.935 35 H 0.145 0.855 36 H 0.145 0.855 37 H 0.135 0.865 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.068 0.932 41 H 0.020 0.980 42 H 0.086 0.914 43 H 0.052 0.948 44 H 0.076 0.924 45 H 0.075 0.925 46 H 0.071 0.929 47 H 0.000 1.000 48 H 0.036 0.964 49 H 0.264 0.736 50 H 0.054 0.946 51 H 0.081 0.919 52 H 0.102 0.898 53 H 0.025 0.975 54 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.806 -11.160 19.712 32.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.256 6.256 3 C 0.066 3.934 4 C -0.231 4.231 5 C -0.102 4.102 6 C -0.152 4.152 7 C -0.042 4.042 8 C 0.014 3.986 9 H 0.058 0.942 10 C -0.193 4.193 11 N -0.249 5.249 12 C -0.064 4.064 13 C -0.064 4.064 14 N -0.283 5.283 15 C -0.054 4.054 16 C 0.000 4.000 17 H 0.134 0.866 18 C -0.049 4.049 19 N -0.194 5.194 20 C 0.000 4.000 21 C -0.576 4.576 22 H 0.072 0.928 23 C -0.187 4.187 24 N -0.562 5.562 25 Si 0.773 3.227 26 H -0.212 1.212 27 H -0.203 1.203 28 H -0.188 1.188 29 C -0.075 4.075 30 C -0.068 4.068 31 C -0.185 4.185 32 H 0.081 0.919 33 H 0.133 0.867 34 H 0.084 0.916 35 H 0.163 0.837 36 H 0.163 0.837 37 H 0.153 0.847 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.038 0.962 42 H 0.104 0.896 43 H 0.071 0.929 44 H 0.095 0.905 45 H 0.093 0.907 46 H 0.089 0.911 47 H 0.019 0.981 48 H 0.054 0.946 49 H 0.073 0.927 50 H 0.073 0.927 51 H 0.099 0.901 52 H 0.120 0.880 53 H 0.043 0.957 54 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -23.306 -12.674 18.829 32.532 hybrid contribution 0.866 0.398 -0.525 1.088 sum -22.440 -12.277 18.304 31.454 Atomic orbital electron populations 1.23308 0.76533 1.05384 1.02222 1.86039 1.23422 1.27207 1.88887 1.19111 0.92298 0.84804 0.97144 1.21479 1.00949 0.92054 1.08583 1.21264 0.94651 0.97695 0.96634 1.21069 0.93544 0.98570 1.02048 1.19525 0.94743 0.92325 0.97558 1.20526 0.90642 0.92556 0.94925 0.94202 1.21834 1.01566 1.02745 0.93203 1.62252 1.09951 1.43692 1.08964 1.22090 1.00030 0.96346 0.87887 1.22101 0.86721 0.97945 0.99676 1.62135 1.10752 1.45101 1.10273 1.22016 0.92139 0.93598 0.97616 1.19207 0.96659 0.85221 0.98916 0.86559 1.29373 0.90367 0.93425 0.91702 1.80992 1.11807 1.14672 1.11937 1.18985 0.94828 0.92062 0.94152 1.21539 0.93278 1.10906 1.31889 0.92834 1.25697 1.02447 0.95340 0.95228 1.70029 1.37033 1.15063 1.34101 0.85711 0.81012 0.77402 0.78553 1.21151 1.20339 1.18813 1.22262 1.00269 0.97688 0.87249 1.22212 0.87068 0.97022 1.00518 1.20346 0.91911 0.98223 1.08025 0.91867 0.86667 0.91591 0.83738 0.83676 0.84748 0.91316 0.91605 0.91315 0.96167 0.89550 0.92947 0.90519 0.90669 0.91130 0.98122 0.94561 0.92743 0.92730 0.90096 0.88023 0.95675 0.85986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 113.37 1.11 1.29 16 2 O -0.34 -6.08 10.50 -92.45 -0.97 -7.05 16 3 C 0.11 2.05 6.69 22.51 0.15 2.20 16 4 C -0.21 -3.12 9.04 22.37 0.20 -2.92 16 5 C -0.08 -1.20 10.04 22.26 0.22 -0.97 16 6 C -0.13 -2.19 8.11 22.28 0.18 -2.01 16 7 C -0.04 -0.73 3.73 -19.88 -0.07 -0.81 16 8 C 0.12 2.13 2.27 44.17 0.10 2.23 16 9 H 0.04 0.79 8.00 -2.39 -0.02 0.77 16 10 C -0.14 -1.94 8.94 71.98 0.64 -1.30 16 11 N -0.52 -9.95 3.91 -874.88 -3.42 -13.38 16 12 C 0.06 1.37 5.20 86.31 0.45 1.82 16 13 C 0.06 1.40 5.61 86.31 0.48 1.88 16 14 N -0.56 -14.41 4.38 -895.71 -3.92 -18.33 16 15 C 0.08 2.15 4.33 86.30 0.37 2.52 16 16 C 0.02 0.78 2.12 -12.60 -0.03 0.76 16 17 H 0.12 3.84 6.32 -2.39 -0.02 3.82 16 18 C 0.27 11.20 13.64 89.44 1.22 12.42 16 19 N -0.52 -23.75 18.54 20.01 0.37 -23.38 16 20 C 0.04 1.77 4.42 29.85 0.13 1.91 16 21 C -0.54 -28.48 8.60 25.60 0.22 -28.26 16 22 H 0.05 2.81 7.59 -2.91 -0.02 2.79 16 23 C 0.01 0.65 5.46 84.65 0.46 1.11 16 24 N -0.92 -52.87 13.29 21.45 0.28 -52.58 16 25 Si 0.95 43.45 29.54 68.60 2.03 45.48 16 26 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 27 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 28 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 29 C 0.05 1.19 5.41 86.31 0.47 1.66 16 30 C 0.06 1.20 5.32 86.31 0.46 1.66 16 31 C -0.17 -3.21 9.61 22.37 0.21 -2.99 16 32 H 0.06 0.46 7.67 -2.39 -0.02 0.44 16 33 H 0.12 0.60 8.14 -2.38 -0.02 0.58 16 34 H 0.07 0.43 7.65 -2.39 -0.02 0.41 16 35 H 0.14 1.43 6.30 -2.92 -0.02 1.42 16 36 H 0.15 1.38 8.06 -2.91 -0.02 1.35 16 37 H 0.13 2.17 7.71 -2.91 -0.02 2.14 16 38 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.07 0.90 6.34 -2.38 -0.02 0.89 16 41 H 0.02 0.51 8.14 -2.38 -0.02 0.49 16 42 H 0.09 1.74 6.05 -2.39 -0.01 1.72 16 43 H 0.05 1.07 8.14 -2.39 -0.02 1.06 16 44 H 0.08 1.69 8.07 -2.39 -0.02 1.67 16 45 H 0.07 2.21 8.03 -2.39 -0.02 2.20 16 46 H 0.07 1.81 8.12 -2.39 -0.02 1.79 16 47 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 48 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 49 H 0.26 14.36 8.31 -92.70 -0.77 13.59 16 50 H 0.05 1.14 8.14 -2.38 -0.02 1.13 16 51 H 0.08 1.89 6.26 -2.39 -0.01 1.87 16 52 H 0.10 1.66 6.14 -2.39 -0.01 1.64 16 53 H 0.02 0.59 8.14 -2.39 -0.02 0.58 16 54 H 0.12 2.34 8.04 -2.91 -0.02 2.31 16 Total: -1.00 -66.20 427.77 2.24 -63.96 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: 0.88 Total: 13.08 kcal Atomic # 6 Polarization: -14.80 SS G_CDS: 6.99 Total: -7.80 kcal Atomic # 7 Polarization: -100.98 SS G_CDS: -6.69 Total: -107.67 kcal Atomic # 8 Polarization: -6.08 SS G_CDS: -0.97 Total: -7.05 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -66.20 2.24 -63.96 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069845060.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.914 kcal (2) G-P(sol) polarization free energy of solvation -66.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds