Wall clock time and date at job start Tue Mar 31 2020 05:02:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.36025 * 117.00056 * 2 1 4 4 C 1.38661 * 119.98853 * 359.97438 * 3 2 1 5 5 C 1.38114 * 120.03816 * 179.97438 * 4 3 2 6 6 C 1.38864 * 120.02515 * 0.02562 * 5 4 3 7 7 N 1.40026 * 120.01084 * 179.97438 * 6 5 4 8 8 C 1.34776 * 120.00013 * 15.34876 * 7 6 5 9 9 O 1.21563 * 120.00145 * 40.73929 * 8 7 6 10 10 C 1.47856 * 119.99870 * 220.74651 * 8 7 6 11 11 C 1.39933 * 120.02780 * 341.71823 * 10 8 7 12 12 C 1.38328 * 120.35680 * 179.97438 * 11 10 8 13 13 C 1.37755 * 120.41239 * 0.02562 * 12 11 10 14 14 C 1.40750 * 120.04627 * 359.97438 * 13 12 11 15 15 C 1.41432 * 120.17880 * 180.02562 * 14 13 12 16 16 H 1.07999 * 120.00174 * 325.64136 * 15 14 13 17 17 C 1.39940 * 120.00063 * 145.64133 * 15 14 13 18 18 N 1.30829 * 120.00048 * 3.55139 * 17 15 14 19 19 Si 1.86804 * 120.00026 * 183.55357 * 17 15 14 20 20 H 1.48504 * 109.46893 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47212 * 119.99720 * 19 17 15 22 22 H 1.48498 * 109.46753 * 240.00089 * 19 17 15 23 23 C 1.39006 * 120.02544 * 161.68455 * 10 8 7 24 24 C 1.46499 * 120.00320 * 195.34017 * 7 6 5 25 25 C 1.53007 * 109.46828 * 82.33839 * 24 7 6 26 26 C 1.52997 * 109.47507 * 202.33629 * 24 7 6 27 27 C 1.38853 * 119.98205 * 0.27873 * 6 5 4 28 28 C 1.38268 * 119.95398 * 359.42292 * 27 6 5 29 29 F 1.35100 * 120.00853 * 180.29526 * 28 27 6 30 30 H 1.08998 * 109.47246 * 60.00251 * 1 2 3 31 31 H 1.09005 * 109.47010 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47535 * 300.00242 * 1 2 3 33 33 H 1.07994 * 119.98048 * 359.97438 * 4 3 2 34 34 H 1.08007 * 119.98969 * 180.02562 * 5 4 3 35 35 H 1.07999 * 119.81728 * 359.96503 * 11 10 8 36 36 H 1.07995 * 119.79157 * 179.97438 * 12 11 10 37 37 H 1.07999 * 119.97636 * 179.97438 * 13 12 11 38 38 H 0.96996 * 120.00248 * 179.97438 * 18 17 15 39 39 H 1.08006 * 120.20721 * 0.29139 * 23 10 8 40 40 H 1.09001 * 109.47186 * 322.33765 * 24 7 6 41 41 H 1.08993 * 109.47447 * 66.35892 * 25 24 7 42 42 H 1.09004 * 109.46884 * 186.36381 * 25 24 7 43 43 H 1.09003 * 109.47030 * 306.35687 * 25 24 7 44 44 H 1.08999 * 109.46993 * 106.27919 * 26 24 7 45 45 H 1.09003 * 109.47102 * 226.28379 * 26 24 7 46 46 H 1.08998 * 109.47160 * 346.28363 * 26 24 7 47 47 H 1.08000 * 120.01910 * 179.70202 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2120 0.0000 4 6 1.2911 2.3748 -0.0005 5 6 1.9171 3.6059 0.0000 6 6 3.3037 3.6804 0.0005 7 7 3.9380 4.9287 0.0005 8 6 3.2397 6.0394 0.3090 9 8 2.4308 6.0165 1.2161 10 6 3.4574 7.2858 -0.4561 11 6 4.6184 7.4441 -1.2212 12 6 4.8287 8.6070 -1.9400 13 6 3.8986 9.6228 -1.9108 14 6 2.7249 9.4818 -1.1470 15 6 1.7678 10.5226 -1.1154 16 1 2.0887 11.5528 -1.1619 17 6 0.4051 10.2177 -1.0239 18 7 0.0202 8.9737 -0.8976 19 14 -0.8644 11.5868 -1.0822 20 1 -0.1757 12.8945 -1.2280 21 1 -1.7707 11.3726 -2.2388 22 1 -1.6556 11.5819 0.1744 23 6 2.5087 8.3010 -0.4165 24 6 5.3608 5.0275 -0.3345 25 6 5.5266 5.0424 -1.8555 26 6 5.9350 6.3179 0.2537 27 6 4.0611 2.5166 -0.0053 28 6 3.4336 1.2845 0.0004 29 9 4.1695 0.1515 0.0007 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 0.2127 2.3177 -0.0014 34 1 1.3279 4.5111 0.0000 35 1 5.3541 6.6540 -1.2504 36 1 5.7281 8.7197 -2.5271 37 1 4.0703 10.5279 -2.4744 38 1 -0.9243 8.7623 -0.8339 39 1 1.6131 8.1850 0.1759 40 1 5.8921 4.1710 0.0805 41 1 5.0926 5.9570 -2.2594 42 1 6.5867 5.0018 -2.1058 43 1 5.0187 4.1788 -2.2849 44 1 6.5588 6.0784 1.1149 45 1 6.5362 6.8251 -0.5008 46 1 5.1189 6.9693 0.5662 47 1 5.1396 2.5738 -0.0098 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069898698.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:51 Heat of formation + Delta-G solvation = 30.207120 kcal Electronic energy + Delta-G solvation = -32330.181029 eV Core-core repulsion = 27975.976410 eV Total energy + Delta-G solvation = -4354.204619 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 357.153 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -48.76907 -41.34837 -39.74887 -37.86765 -37.20544 -36.40083 -33.77736 -32.49006 -30.83283 -30.23019 -29.50421 -28.94175 -27.31403 -26.92416 -25.53335 -23.77663 -23.08972 -21.89769 -21.43354 -20.65954 -18.93248 -18.39006 -17.75144 -17.26613 -16.75987 -16.43324 -16.15895 -15.84356 -15.41991 -15.24418 -15.07830 -14.83972 -14.74244 -14.35487 -13.94555 -13.67768 -13.29635 -13.20439 -13.03357 -12.79975 -12.61255 -12.52800 -12.43268 -12.15631 -12.03700 -11.79120 -11.57356 -11.56786 -11.25744 -11.16529 -11.12317 -11.08558 -10.83157 -10.51325 -10.11918 -9.97525 -9.64542 -9.35164 -9.21606 -9.02492 -8.88893 -7.74873 -7.38360 -7.35759 -6.72696 -4.50623 1.13061 1.24363 1.96771 2.74031 2.94015 3.04272 3.06117 3.10048 3.15844 3.34397 3.71222 3.90476 4.23962 4.55642 4.58799 4.79662 4.85842 4.97674 5.03012 5.06757 5.14202 5.18313 5.24179 5.32484 5.42249 5.47350 5.58031 5.64366 5.81725 5.86516 5.89819 5.96054 6.07385 6.21224 6.24612 6.25500 6.39103 6.43003 6.51012 6.60566 6.87206 6.92086 7.01801 7.18285 7.28153 7.29963 7.46852 7.59900 7.70522 7.90863 8.10027 8.43181 8.44000 8.75631 8.79568 10.18792 Molecular weight = 357.15amu Principal moments of inertia in cm(-1) A = 0.011565 B = 0.003210 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2420.587550 B = 8721.165009 C =10662.047211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.314 6.314 3 C 0.053 3.947 4 C -0.142 4.142 5 C -0.121 4.121 6 C 0.190 3.810 7 N -0.579 5.579 8 C 0.583 3.417 9 O -0.499 6.499 10 C -0.152 4.152 11 C -0.261 4.261 12 C -0.117 4.117 13 C -0.192 4.192 14 C 0.089 3.911 15 C -0.463 4.463 16 H 0.079 0.921 17 C 0.069 3.931 18 N -0.809 5.809 19 Si 0.916 3.084 20 H -0.262 1.262 21 H -0.274 1.274 22 H -0.273 1.273 23 C -0.073 4.073 24 C 0.137 3.863 25 C -0.216 4.216 26 C -0.184 4.184 27 C -0.174 4.174 28 C 0.101 3.899 29 F -0.134 7.134 30 H 0.056 0.944 31 H 0.099 0.901 32 H 0.056 0.944 33 H 0.140 0.860 34 H 0.142 0.858 35 H 0.179 0.821 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.280 0.720 39 H 0.141 0.859 40 H 0.087 0.913 41 H 0.117 0.883 42 H 0.069 0.931 43 H 0.061 0.939 44 H 0.048 0.952 45 H 0.085 0.915 46 H 0.100 0.900 47 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.967 -12.130 -0.456 13.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.228 6.228 3 C 0.006 3.994 4 C -0.161 4.161 5 C -0.142 4.142 6 C 0.094 3.906 7 N -0.304 5.304 8 C 0.378 3.622 9 O -0.373 6.373 10 C -0.155 4.155 11 C -0.278 4.278 12 C -0.136 4.136 13 C -0.212 4.212 14 C 0.087 3.913 15 C -0.494 4.494 16 H 0.097 0.903 17 C -0.146 4.146 18 N -0.435 5.435 19 Si 0.741 3.259 20 H -0.185 1.185 21 H -0.199 1.199 22 H -0.199 1.199 23 C -0.094 4.094 24 C 0.035 3.965 25 C -0.273 4.273 26 C -0.240 4.240 27 C -0.196 4.196 28 C 0.080 3.920 29 F -0.112 7.112 30 H 0.075 0.925 31 H 0.117 0.883 32 H 0.075 0.925 33 H 0.157 0.843 34 H 0.160 0.840 35 H 0.195 0.805 36 H 0.113 0.887 37 H 0.114 0.886 38 H 0.091 0.909 39 H 0.159 0.841 40 H 0.105 0.895 41 H 0.134 0.866 42 H 0.088 0.912 43 H 0.080 0.920 44 H 0.066 0.934 45 H 0.104 0.896 46 H 0.118 0.882 47 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 4.439 -12.364 0.090 13.137 hybrid contribution -0.801 0.505 -0.208 0.970 sum 3.638 -11.858 -0.118 12.405 Atomic orbital electron populations 1.23059 0.78346 1.03830 1.01546 1.86092 1.21335 1.25806 1.89608 1.18789 0.90606 0.85497 1.04495 1.20923 1.00183 0.90658 1.04324 1.20939 0.92795 0.98667 1.01848 1.17373 0.91400 0.84624 0.97217 1.45613 1.10733 1.04235 1.69827 1.18933 0.78430 0.83493 0.81361 1.90717 1.35140 1.84795 1.26650 1.19612 0.98716 0.94126 1.03084 1.23270 1.00416 1.01372 1.02745 1.20510 0.98328 0.94696 1.00022 1.21318 0.97857 0.99114 1.02900 1.17623 0.91546 0.92874 0.89286 1.19558 0.90431 0.94279 1.45084 0.90304 1.25896 0.99856 0.96466 0.92403 1.69706 1.18059 1.18694 1.37069 0.86124 0.79964 0.81262 0.78551 1.18539 1.19913 1.19853 1.21951 0.97846 0.92205 0.97356 1.21265 0.79550 0.99747 0.95937 1.23229 1.02854 1.06031 0.95164 1.23191 1.03226 0.96857 1.00708 1.20457 1.00686 0.89088 1.09338 1.16488 0.85703 0.82220 1.07559 1.91477 1.76667 1.48835 1.94250 0.92544 0.88293 0.92544 0.84270 0.84020 0.80494 0.88747 0.88579 0.90867 0.84107 0.89536 0.86562 0.91232 0.92028 0.93357 0.89622 0.88205 0.83796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.31 -4.13 10.36 -19.82 -0.21 -4.34 16 3 C 0.05 0.75 6.69 -39.18 -0.26 0.49 16 4 C -0.14 -1.98 9.03 -39.47 -0.36 -2.33 16 5 C -0.12 -2.01 8.84 -39.40 -0.35 -2.35 16 6 C 0.19 3.07 6.27 -83.65 -0.52 2.55 16 7 N -0.58 -9.74 2.68 -107.39 -0.29 -10.02 16 8 C 0.58 12.01 5.11 -12.32 -0.06 11.94 16 9 O -0.50 -11.63 15.25 5.31 0.08 -11.55 16 10 C -0.15 -3.31 4.91 -105.04 -0.52 -3.82 16 11 C -0.26 -4.86 4.57 -38.91 -0.18 -5.04 16 12 C -0.12 -2.27 10.01 -39.72 -0.40 -2.67 16 13 C -0.19 -4.28 9.78 -38.81 -0.38 -4.66 16 14 C 0.09 2.24 5.55 -106.87 -0.59 1.64 16 15 C -0.46 -11.80 9.04 -37.73 -0.34 -12.14 16 16 H 0.08 1.93 7.85 -52.49 -0.41 1.51 16 17 C 0.07 1.71 5.42 -17.34 -0.09 1.61 16 18 N -0.81 -20.69 10.61 55.55 0.59 -20.11 16 19 Si 0.92 18.53 29.56 -169.99 -5.03 13.51 16 20 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 21 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 22 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 23 C -0.07 -1.84 8.20 -38.44 -0.32 -2.16 16 24 C 0.14 1.83 2.72 -67.93 -0.19 1.65 16 25 C -0.22 -2.64 8.74 37.16 0.32 -2.31 16 26 C -0.18 -2.51 7.83 37.16 0.29 -2.22 16 27 C -0.17 -2.43 9.28 -39.34 -0.37 -2.80 16 28 C 0.10 1.46 7.30 -39.32 -0.29 1.18 16 29 F -0.13 -1.96 17.11 2.25 0.04 -1.92 16 30 H 0.06 0.45 7.66 -51.93 -0.40 0.05 16 31 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.45 7.66 -51.93 -0.40 0.05 16 33 H 0.14 1.59 6.29 -52.49 -0.33 1.26 16 34 H 0.14 2.65 6.38 -52.48 -0.34 2.31 16 35 H 0.18 2.70 0.55 -102.38 -0.06 2.64 16 36 H 0.09 1.52 8.06 -52.49 -0.42 1.10 16 37 H 0.10 2.01 8.06 -52.49 -0.42 1.58 16 38 H 0.28 6.61 8.30 -40.82 -0.34 6.27 16 39 H 0.14 3.87 5.84 -52.48 -0.31 3.56 16 40 H 0.09 0.96 6.16 -51.93 -0.32 0.64 16 41 H 0.12 1.68 4.42 -51.93 -0.23 1.45 16 42 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.09 1.05 6.29 -51.93 -0.33 0.72 16 46 H 0.10 1.73 3.76 -51.93 -0.20 1.54 16 47 H 0.14 1.69 6.12 -52.49 -0.32 1.37 16 LS Contribution 371.95 15.07 5.61 5.61 Total: -1.00 -28.88 371.95 -8.10 -36.98 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: -5.30 Total: 12.05 kcal Atomic # 6 Polarization: -16.61 SS G_CDS: -3.60 Total: -20.20 kcal Atomic # 7 Polarization: -30.43 SS G_CDS: 0.30 Total: -30.13 kcal Atomic # 8 Polarization: -15.76 SS G_CDS: -0.12 Total: -15.89 kcal Atomic # 9 Polarization: -1.96 SS G_CDS: 0.04 Total: -1.92 kcal Atomic # 14 Polarization: 18.53 SS G_CDS: -5.03 Total: 13.51 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -28.88 -8.10 -36.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069898698.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.186 kcal (2) G-P(sol) polarization free energy of solvation -28.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds