Wall clock time and date at job start Tue Mar 31 2020 05:02:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.36025 * 117.00056 * 2 1 4 4 C 1.38661 * 119.98853 * 359.97438 * 3 2 1 5 5 C 1.38114 * 120.03816 * 179.97438 * 4 3 2 6 6 C 1.38864 * 120.02515 * 0.02562 * 5 4 3 7 7 N 1.40026 * 120.01084 * 179.97438 * 6 5 4 8 8 C 1.34776 * 120.00013 * 15.34876 * 7 6 5 9 9 O 1.21563 * 120.00145 * 40.73929 * 8 7 6 10 10 C 1.47856 * 119.99870 * 220.74651 * 8 7 6 11 11 C 1.39933 * 120.02780 * 341.71823 * 10 8 7 12 12 C 1.38328 * 120.35680 * 179.97438 * 11 10 8 13 13 C 1.37755 * 120.41239 * 0.02562 * 12 11 10 14 14 C 1.40750 * 120.04627 * 359.97438 * 13 12 11 15 15 C 1.41432 * 120.17880 * 180.02562 * 14 13 12 16 16 H 1.07999 * 120.00174 * 325.64136 * 15 14 13 17 17 C 1.39940 * 120.00063 * 145.64133 * 15 14 13 18 18 N 1.30829 * 120.00048 * 3.55139 * 17 15 14 19 19 Si 1.86804 * 120.00026 * 183.55357 * 17 15 14 20 20 H 1.48504 * 109.46893 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47212 * 119.99720 * 19 17 15 22 22 H 1.48498 * 109.46753 * 240.00089 * 19 17 15 23 23 C 1.39006 * 120.02544 * 161.68455 * 10 8 7 24 24 C 1.46499 * 120.00320 * 195.34017 * 7 6 5 25 25 C 1.53007 * 109.46828 * 82.33839 * 24 7 6 26 26 C 1.52997 * 109.47507 * 202.33629 * 24 7 6 27 27 C 1.38853 * 119.98205 * 0.27873 * 6 5 4 28 28 C 1.38268 * 119.95398 * 359.42292 * 27 6 5 29 29 F 1.35100 * 120.00853 * 180.29526 * 28 27 6 30 30 H 1.08998 * 109.47246 * 60.00251 * 1 2 3 31 31 H 1.09005 * 109.47010 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47535 * 300.00242 * 1 2 3 33 33 H 1.07994 * 119.98048 * 359.97438 * 4 3 2 34 34 H 1.08007 * 119.98969 * 180.02562 * 5 4 3 35 35 H 1.07999 * 119.81728 * 359.96503 * 11 10 8 36 36 H 1.07995 * 119.79157 * 179.97438 * 12 11 10 37 37 H 1.07999 * 119.97636 * 179.97438 * 13 12 11 38 38 H 0.96996 * 120.00248 * 179.97438 * 18 17 15 39 39 H 1.08006 * 120.20721 * 0.29139 * 23 10 8 40 40 H 1.09001 * 109.47186 * 322.33765 * 24 7 6 41 41 H 1.08993 * 109.47447 * 66.35892 * 25 24 7 42 42 H 1.09004 * 109.46884 * 186.36381 * 25 24 7 43 43 H 1.09003 * 109.47030 * 306.35687 * 25 24 7 44 44 H 1.08999 * 109.46993 * 106.27919 * 26 24 7 45 45 H 1.09003 * 109.47102 * 226.28379 * 26 24 7 46 46 H 1.08998 * 109.47160 * 346.28363 * 26 24 7 47 47 H 1.08000 * 120.01910 * 179.70202 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2120 0.0000 4 6 1.2911 2.3748 -0.0005 5 6 1.9171 3.6059 0.0000 6 6 3.3037 3.6804 0.0005 7 7 3.9380 4.9287 0.0005 8 6 3.2397 6.0394 0.3090 9 8 2.4308 6.0165 1.2161 10 6 3.4574 7.2858 -0.4561 11 6 4.6184 7.4441 -1.2212 12 6 4.8287 8.6070 -1.9400 13 6 3.8986 9.6228 -1.9108 14 6 2.7249 9.4818 -1.1470 15 6 1.7678 10.5226 -1.1154 16 1 2.0887 11.5528 -1.1619 17 6 0.4051 10.2177 -1.0239 18 7 0.0202 8.9737 -0.8976 19 14 -0.8644 11.5868 -1.0822 20 1 -0.1757 12.8945 -1.2280 21 1 -1.7707 11.3726 -2.2388 22 1 -1.6556 11.5819 0.1744 23 6 2.5087 8.3010 -0.4165 24 6 5.3608 5.0275 -0.3345 25 6 5.5266 5.0424 -1.8555 26 6 5.9350 6.3179 0.2537 27 6 4.0611 2.5166 -0.0053 28 6 3.4336 1.2845 0.0004 29 9 4.1695 0.1515 0.0007 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 0.2127 2.3177 -0.0014 34 1 1.3279 4.5111 0.0000 35 1 5.3541 6.6540 -1.2504 36 1 5.7281 8.7197 -2.5271 37 1 4.0703 10.5279 -2.4744 38 1 -0.9243 8.7623 -0.8339 39 1 1.6131 8.1850 0.1759 40 1 5.8921 4.1710 0.0805 41 1 5.0926 5.9570 -2.2594 42 1 6.5867 5.0018 -2.1058 43 1 5.0187 4.1788 -2.2849 44 1 6.5588 6.0784 1.1149 45 1 6.5362 6.8251 -0.5008 46 1 5.1189 6.9693 0.5662 47 1 5.1396 2.5738 -0.0098 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069898698.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:50 Heat of formation + Delta-G solvation = 15.216258 kcal Electronic energy + Delta-G solvation = -32330.831082 eV Core-core repulsion = 27975.976410 eV Total energy + Delta-G solvation = -4354.854672 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 357.153 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -49.90322 -42.72276 -40.86342 -39.29820 -38.67068 -37.76234 -35.46213 -33.84602 -32.12319 -31.72621 -31.16633 -30.11212 -28.35572 -27.92754 -27.21439 -25.20216 -24.32732 -23.18917 -22.91712 -22.16728 -20.33070 -19.60286 -19.23674 -18.54331 -18.08304 -17.82301 -17.20276 -17.13172 -16.99175 -16.70475 -16.35318 -16.06307 -15.86563 -15.55982 -15.25386 -15.20356 -14.78598 -14.52444 -14.40927 -14.21059 -14.03908 -13.87855 -13.59121 -13.44953 -13.23089 -13.08661 -12.88255 -12.76158 -12.66682 -12.54008 -12.28684 -12.24529 -12.15622 -12.13295 -11.84611 -11.59967 -11.14037 -11.02605 -10.57805 -10.45549 -10.04419 -9.45590 -9.11633 -8.59793 -8.51726 -6.40392 -0.06870 -0.02502 0.41762 1.03883 1.35868 1.42873 1.50851 1.61071 1.81631 2.20332 2.20909 2.48314 2.79013 3.10786 3.43194 3.61404 3.70820 3.79761 3.83191 3.93308 3.99348 4.06779 4.31548 4.36823 4.37093 4.45117 4.49879 4.57472 4.66067 4.70871 4.78045 4.81215 4.87525 4.90850 4.99103 5.03472 5.09472 5.13667 5.21051 5.27344 5.35070 5.38401 5.41440 5.53491 5.77046 5.85329 5.92223 6.08558 6.19858 6.24736 6.32945 6.61673 6.87890 6.94656 6.96273 8.40311 Molecular weight = 357.15amu Principal moments of inertia in cm(-1) A = 0.011565 B = 0.003210 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2420.587550 B = 8721.165009 C =10662.047211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.326 6.326 3 C 0.058 3.942 4 C -0.138 4.138 5 C -0.142 4.142 6 C 0.169 3.831 7 N -0.575 5.575 8 C 0.586 3.414 9 O -0.542 6.542 10 C -0.162 4.162 11 C -0.227 4.227 12 C -0.119 4.119 13 C -0.195 4.195 14 C 0.052 3.948 15 C -0.501 4.501 16 H 0.077 0.923 17 C 0.024 3.976 18 N -0.849 5.849 19 Si 0.986 3.014 20 H -0.254 1.254 21 H -0.267 1.267 22 H -0.272 1.272 23 C -0.110 4.110 24 C 0.125 3.875 25 C -0.214 4.214 26 C -0.190 4.190 27 C -0.153 4.153 28 C 0.093 3.907 29 F -0.132 7.132 30 H 0.065 0.935 31 H 0.125 0.875 32 H 0.063 0.937 33 H 0.159 0.841 34 H 0.108 0.892 35 H 0.225 0.775 36 H 0.143 0.857 37 H 0.107 0.893 38 H 0.281 0.719 39 H 0.103 0.897 40 H 0.123 0.877 41 H 0.092 0.908 42 H 0.112 0.888 43 H 0.063 0.937 44 H 0.073 0.927 45 H 0.109 0.891 46 H 0.058 0.942 47 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.908 -14.289 -1.669 16.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.241 6.241 3 C 0.012 3.988 4 C -0.157 4.157 5 C -0.163 4.163 6 C 0.073 3.927 7 N -0.299 5.299 8 C 0.381 3.619 9 O -0.419 6.419 10 C -0.165 4.165 11 C -0.244 4.244 12 C -0.137 4.137 13 C -0.215 4.215 14 C 0.050 3.950 15 C -0.532 4.532 16 H 0.096 0.904 17 C -0.187 4.187 18 N -0.477 5.477 19 Si 0.807 3.193 20 H -0.178 1.178 21 H -0.192 1.192 22 H -0.197 1.197 23 C -0.131 4.131 24 C 0.025 3.975 25 C -0.270 4.270 26 C -0.246 4.246 27 C -0.174 4.174 28 C 0.072 3.928 29 F -0.110 7.110 30 H 0.083 0.917 31 H 0.144 0.856 32 H 0.081 0.919 33 H 0.177 0.823 34 H 0.126 0.874 35 H 0.240 0.760 36 H 0.161 0.839 37 H 0.125 0.875 38 H 0.091 0.909 39 H 0.121 0.879 40 H 0.140 0.860 41 H 0.110 0.890 42 H 0.130 0.870 43 H 0.082 0.918 44 H 0.092 0.908 45 H 0.127 0.873 46 H 0.077 0.923 47 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 7.416 -14.554 -1.144 16.375 hybrid contribution -1.544 0.906 0.176 1.799 sum 5.871 -13.648 -0.968 14.889 Atomic orbital electron populations 1.23401 0.76121 1.05927 1.02325 1.86093 1.23655 1.25079 1.89228 1.18898 0.90862 0.85871 1.03216 1.21026 1.01269 0.89731 1.03674 1.20854 0.93442 0.98415 1.03637 1.17489 0.91339 0.84971 0.98879 1.45557 1.11803 1.03305 1.69277 1.18794 0.78060 0.84263 0.80786 1.90684 1.37175 1.85544 1.28520 1.19889 0.99099 0.94025 1.03483 1.24054 0.99323 1.02011 0.99015 1.21032 0.99179 0.93607 0.99885 1.21613 0.97268 1.00456 1.02129 1.17930 0.93104 0.93243 0.90690 1.19794 0.91577 0.94393 1.47464 0.90447 1.26759 1.01573 0.98669 0.91725 1.69856 1.18224 1.20620 1.39008 0.85092 0.77257 0.78398 0.78543 1.17758 1.19204 1.19669 1.21689 0.98211 0.94201 0.98982 1.21724 0.77549 1.01071 0.97192 1.23152 1.05467 1.04710 0.93700 1.23173 1.02391 0.96450 1.02617 1.20587 1.01855 0.87739 1.07264 1.16629 0.85939 0.82459 1.07728 1.91483 1.76587 1.48730 1.94248 0.91674 0.85646 0.91854 0.82334 0.87387 0.76035 0.83947 0.87516 0.90904 0.87909 0.85959 0.89003 0.86993 0.91803 0.90838 0.87300 0.92322 0.80813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.36 16 2 O -0.33 -7.92 10.36 -93.83 -0.97 -8.89 16 3 C 0.06 1.57 6.69 22.53 0.15 1.72 16 4 C -0.14 -3.82 9.03 22.34 0.20 -3.62 16 5 C -0.14 -4.86 8.84 22.39 0.20 -4.66 16 6 C 0.17 5.32 6.27 38.13 0.24 5.56 16 7 N -0.57 -18.84 2.68 -611.94 -1.64 -20.48 16 8 C 0.59 25.19 5.11 86.79 0.44 25.64 16 9 O -0.54 -27.31 15.25 -3.91 -0.06 -27.37 16 10 C -0.16 -7.31 4.91 -20.14 -0.10 -7.41 16 11 C -0.23 -8.16 4.57 22.70 0.10 -8.06 16 12 C -0.12 -4.35 10.01 22.18 0.22 -4.13 16 13 C -0.19 -8.76 9.78 22.77 0.22 -8.54 16 14 C 0.05 2.78 5.55 -21.32 -0.12 2.67 16 15 C -0.50 -27.30 9.04 23.47 0.21 -27.09 16 16 H 0.08 4.02 7.85 -2.91 -0.02 4.00 16 17 C 0.02 1.24 5.42 85.25 0.46 1.71 16 18 N -0.85 -47.25 10.61 21.83 0.23 -47.02 16 19 Si 0.99 40.13 29.56 68.60 2.03 42.16 16 20 H -0.25 -9.88 7.11 99.48 0.71 -9.17 16 21 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 22 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 23 C -0.11 -5.98 8.20 23.01 0.19 -5.79 16 24 C 0.13 2.86 2.72 44.99 0.12 2.99 16 25 C -0.21 -4.19 8.74 71.98 0.63 -3.57 16 26 C -0.19 -4.52 7.83 71.98 0.56 -3.96 16 27 C -0.15 -3.86 9.28 22.42 0.21 -3.65 16 28 C 0.09 2.48 7.30 22.44 0.16 2.64 16 29 F -0.13 -3.48 17.11 44.97 0.77 -2.71 16 30 H 0.06 0.91 7.66 -2.39 -0.02 0.89 16 31 H 0.13 1.27 8.14 -2.38 -0.02 1.25 16 32 H 0.06 0.91 7.66 -2.39 -0.02 0.89 16 33 H 0.16 3.59 6.29 -2.91 -0.02 3.58 16 34 H 0.11 4.44 6.38 -2.91 -0.02 4.42 16 35 H 0.22 5.97 0.55 -49.78 -0.03 5.94 16 36 H 0.14 3.88 8.06 -2.91 -0.02 3.86 16 37 H 0.11 4.45 8.06 -2.91 -0.02 4.43 16 38 H 0.28 14.42 8.30 -92.71 -0.77 13.65 16 39 H 0.10 6.31 5.84 -2.91 -0.02 6.29 16 40 H 0.12 2.01 6.16 -2.39 -0.01 2.00 16 41 H 0.09 2.28 4.42 -2.39 -0.01 2.27 16 42 H 0.11 1.33 8.14 -2.38 -0.02 1.31 16 43 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 45 H 0.11 2.08 6.29 -2.39 -0.02 2.07 16 46 H 0.06 1.96 3.76 -2.39 -0.01 1.95 16 47 H 0.17 3.22 6.12 -2.91 -0.02 3.20 16 Total: -1.00 -71.46 371.95 6.60 -64.85 By element: Atomic # 1 Polarization: 34.63 SS G_CDS: 1.02 Total: 35.65 kcal Atomic # 6 Polarization: -41.42 SS G_CDS: 5.23 Total: -36.19 kcal Atomic # 7 Polarization: -66.09 SS G_CDS: -1.41 Total: -67.50 kcal Atomic # 8 Polarization: -35.23 SS G_CDS: -1.03 Total: -36.26 kcal Atomic # 9 Polarization: -3.48 SS G_CDS: 0.77 Total: -2.71 kcal Atomic # 14 Polarization: 40.13 SS G_CDS: 2.03 Total: 42.16 kcal Total: -71.46 6.60 -64.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069898698.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.070 kcal (2) G-P(sol) polarization free energy of solvation -71.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds