Wall clock time and date at job start Tue Mar 31 2020 05:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47986 * 2 1 4 4 O 1.42905 * 109.47356 * 240.00062 * 2 1 3 5 5 C 1.53007 * 109.46987 * 120.00343 * 2 1 3 6 6 N 1.46903 * 109.46773 * 185.53191 * 5 2 1 7 7 C 1.46897 * 111.00182 * 283.12803 * 6 5 2 8 8 C 1.53236 * 109.34086 * 187.25805 * 7 6 5 9 9 N 1.47076 * 108.52155 * 306.17117 * 8 7 6 10 10 C 1.34771 * 120.88334 * 231.18452 * 9 8 7 11 11 O 1.21669 * 119.99763 * 7.94229 * 10 9 8 12 12 C 1.46894 * 120.00405 * 187.93913 * 10 9 8 13 13 C 1.36115 * 125.43665 * 26.51557 * 12 10 9 14 14 C 1.41697 * 107.75346 * 179.97438 * 13 12 10 15 15 C 1.40020 * 133.35832 * 179.97438 * 14 13 12 16 16 C 1.36572 * 119.83173 * 180.02562 * 15 14 13 17 17 C 1.38851 * 120.60311 * 0.02562 * 16 15 14 18 18 C 1.37841 * 120.63417 * 359.97438 * 17 16 15 19 19 C 1.39088 * 119.81246 * 359.75343 * 18 17 16 20 20 N 1.37833 * 133.16207 * 179.61802 * 19 18 17 21 21 C 1.36889 * 125.61957 * 0.71152 * 20 19 18 22 22 H 1.08004 * 120.00543 * 137.82487 * 21 20 19 23 23 C 1.39010 * 120.00105 * 317.82758 * 21 20 19 24 24 N 1.31344 * 119.99940 * 352.61139 * 23 21 20 25 25 Si 1.86800 * 120.00198 * 172.61064 * 23 21 20 26 26 H 1.48498 * 109.47228 * 60.00277 * 25 23 21 27 27 H 1.48500 * 109.47073 * 180.02562 * 25 23 21 28 28 H 1.48496 * 109.47168 * 299.99943 * 25 23 21 29 29 C 1.47080 * 118.23878 * 51.45782 * 9 8 7 30 30 C 1.46898 * 111.00220 * 47.43714 * 6 5 2 31 31 H 1.08991 * 109.46873 * 300.00171 * 1 2 3 32 32 H 1.09003 * 109.47006 * 60.00105 * 1 2 3 33 33 H 1.08999 * 109.47461 * 179.97438 * 1 2 3 34 34 H 0.96711 * 113.99370 * 300.00452 * 4 2 1 35 35 H 1.08994 * 109.47108 * 65.52979 * 5 2 1 36 36 H 1.08998 * 109.46552 * 305.52927 * 5 2 1 37 37 H 1.08997 * 109.49050 * 67.29658 * 7 6 5 38 38 H 1.09005 * 109.51387 * 307.23027 * 7 6 5 39 39 H 1.08996 * 109.62780 * 186.45802 * 8 7 6 40 40 H 1.09001 * 109.62678 * 65.88071 * 8 7 6 41 41 H 1.08012 * 126.12253 * 359.96832 * 13 12 10 42 42 H 1.08004 * 120.08213 * 359.97438 * 15 14 13 43 43 H 1.08006 * 119.69773 * 180.02562 * 16 15 14 44 44 H 1.08002 * 119.68389 * 180.02562 * 17 16 15 45 45 H 1.07997 * 120.09700 * 179.97438 * 18 17 16 46 46 H 0.97006 * 120.00377 * 185.03419 * 24 23 21 47 47 H 1.09003 * 109.63171 * 68.25128 * 29 9 8 48 48 H 1.08996 * 109.63165 * 188.83527 * 29 9 8 49 49 H 1.09003 * 109.49074 * 292.69848 * 30 6 5 50 50 H 1.08999 * 109.49898 * 52.77913 * 30 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.0400 -0.7214 1.2493 6 7 3.5029 -0.6068 1.3178 7 6 4.1481 -1.5311 0.3759 8 6 5.6632 -1.5131 0.6046 9 7 6.1307 -0.1207 0.5283 10 6 7.1642 0.2194 -0.2669 11 8 7.6303 -0.5957 -1.0407 12 6 7.7280 1.5742 -0.1997 13 6 7.6898 2.3918 0.8879 14 6 8.3408 3.6019 0.5419 15 6 8.6023 4.7867 1.2407 16 6 9.2685 5.8066 0.6233 17 6 9.6898 5.6808 -0.6938 18 6 9.4441 4.5243 -1.4023 19 6 8.7724 3.4696 -0.7932 20 7 8.3828 2.2218 -1.2302 21 6 8.6114 1.7068 -2.4778 22 1 8.9228 0.6786 -2.5890 23 6 8.4425 2.5072 -3.6018 24 7 7.9263 3.7088 -3.4807 25 14 8.9500 1.8737 -5.2842 26 1 8.1824 0.6428 -5.6019 27 1 8.6691 2.9111 -6.3090 28 1 10.4023 1.5641 -5.2792 29 6 5.4443 0.8897 1.3476 30 6 3.9340 0.7781 1.0853 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 1.7209 -1.5953 -1.2329 35 1 1.7597 -1.7736 1.2011 36 1 1.5980 -0.2679 2.1364 37 1 3.9307 -1.2197 -0.6457 38 1 3.7679 -2.5398 0.5375 39 1 6.1566 -2.1077 -0.1642 40 1 5.8897 -1.9220 1.5893 41 1 7.2431 2.1598 1.8436 42 1 8.2773 4.8940 2.2650 43 1 9.4694 6.7195 1.1645 44 1 10.2157 6.4966 -1.1673 45 1 9.7753 4.4359 -2.4264 46 1 7.7407 4.2389 -4.2717 47 1 5.6502 0.7074 2.4024 48 1 5.7929 1.8845 1.0703 49 1 3.7197 1.0574 0.0537 50 1 3.3984 1.4443 1.7616 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070015773.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:04 Heat of formation + Delta-G solvation = 1.751503 kcal Electronic energy + Delta-G solvation = -33206.366504 eV Core-core repulsion = 29006.681013 eV Total energy + Delta-G solvation = -4199.685491 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 357.184 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.61316 -39.70841 -38.36482 -36.58738 -35.73077 -34.25678 -33.50138 -31.69525 -30.96985 -30.49601 -28.92338 -28.53037 -27.40070 -24.93690 -24.73194 -23.67659 -22.94573 -21.83240 -20.96164 -20.38247 -19.76040 -18.69485 -17.68182 -16.80558 -16.34588 -16.01229 -15.69446 -15.38820 -15.20967 -15.02842 -14.90353 -14.79185 -14.63514 -14.31927 -13.78826 -13.56228 -13.18748 -13.03243 -12.80831 -12.77081 -12.61601 -12.44285 -12.28489 -12.07240 -11.78997 -11.72059 -11.63723 -11.40837 -11.34322 -11.13659 -11.08860 -10.89835 -10.83852 -10.69076 -10.50813 -10.45879 -10.07158 -9.72363 -9.20988 -9.04431 -8.52981 -8.44470 -7.98763 -7.08997 -6.74169 -6.50094 -4.42562 1.92351 2.83252 3.06828 3.08648 3.11196 3.19616 3.30485 3.82119 3.90889 4.12562 4.26405 4.47943 4.70463 4.75290 4.82600 4.86420 5.01360 5.05981 5.14626 5.16656 5.37479 5.39853 5.44678 5.52753 5.58037 5.63520 5.67899 5.76155 5.83906 5.88221 5.97066 6.02761 6.03753 6.09850 6.17903 6.28289 6.37186 6.62871 6.73239 6.84960 6.91265 6.99261 7.02638 7.10716 7.17481 7.23884 7.41505 7.56233 7.64649 7.76887 7.86165 8.04067 8.15873 8.49247 8.77456 8.97784 9.37844 10.28832 Molecular weight = 357.18amu Principal moments of inertia in cm(-1) A = 0.009897 B = 0.003578 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2828.602772 B = 7824.649360 C = 8963.369909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.059 3.941 3 H 0.104 0.896 4 O -0.555 6.555 5 C 0.025 3.975 6 N -0.531 5.531 7 C 0.031 3.969 8 C 0.122 3.878 9 N -0.610 5.610 10 C 0.595 3.405 11 O -0.538 6.538 12 C -0.016 4.016 13 C -0.216 4.216 14 C -0.124 4.124 15 C -0.096 4.096 16 C -0.154 4.154 17 C -0.159 4.159 18 C -0.039 4.039 19 C 0.090 3.910 20 N -0.233 5.233 21 C -0.338 4.338 22 H 0.117 0.883 23 C 0.049 3.951 24 N -0.831 5.831 25 Si 0.935 3.065 26 H -0.266 1.266 27 H -0.278 1.278 28 H -0.264 1.264 29 C 0.098 3.902 30 C 0.035 3.965 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.370 0.630 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.068 0.932 38 H 0.075 0.925 39 H 0.092 0.908 40 H 0.066 0.934 41 H 0.133 0.867 42 H 0.102 0.898 43 H 0.101 0.899 44 H 0.103 0.897 45 H 0.117 0.883 46 H 0.281 0.719 47 H 0.069 0.931 48 H 0.119 0.881 49 H 0.050 0.950 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.666 -5.073 8.573 15.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.001 4.001 3 H 0.122 0.878 4 O -0.360 6.360 5 C -0.104 4.104 6 N -0.254 5.254 7 C -0.098 4.098 8 C -0.001 4.001 9 N -0.346 5.346 10 C 0.386 3.614 11 O -0.415 6.415 12 C -0.134 4.134 13 C -0.244 4.244 14 C -0.128 4.128 15 C -0.115 4.115 16 C -0.173 4.173 17 C -0.180 4.180 18 C -0.059 4.059 19 C -0.025 4.025 20 N 0.107 4.893 21 C -0.467 4.467 22 H 0.135 0.865 23 C -0.162 4.162 24 N -0.461 5.461 25 Si 0.759 3.241 26 H -0.190 1.190 27 H -0.202 1.202 28 H -0.189 1.189 29 C -0.025 4.025 30 C -0.094 4.094 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.217 0.783 35 H 0.093 0.907 36 H 0.102 0.898 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.111 0.889 40 H 0.084 0.916 41 H 0.151 0.849 42 H 0.120 0.880 43 H 0.119 0.881 44 H 0.122 0.878 45 H 0.135 0.865 46 H 0.092 0.908 47 H 0.087 0.913 48 H 0.137 0.863 49 H 0.068 0.932 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -10.926 -5.037 8.016 14.457 hybrid contribution -0.747 -0.415 -1.436 1.671 sum -11.674 -5.452 6.580 14.467 Atomic orbital electron populations 1.22445 0.96363 1.02361 1.02827 1.22795 0.93333 0.98148 0.85838 0.87850 1.86708 1.76417 1.28818 1.44034 1.22945 0.88810 1.01061 0.97587 1.62250 1.05245 1.06546 1.51338 1.22709 0.94368 0.96217 0.96457 1.21564 0.93107 0.83230 1.02201 1.47674 1.33046 1.08627 1.45206 1.17273 0.78853 0.86385 0.78875 1.90724 1.61091 1.52310 1.37392 1.19614 1.06264 0.95073 0.92452 1.20501 1.11507 0.94060 0.98299 1.17966 1.05417 0.95229 0.94227 1.19987 1.00667 0.92745 0.98114 1.20261 1.03141 0.98345 0.95569 1.20540 1.05066 0.97316 0.95030 1.20181 0.96470 0.90802 0.98439 1.18220 1.02910 0.88934 0.92414 1.39890 1.31903 1.09487 1.08065 1.20048 1.47121 0.99465 0.80053 0.86540 1.25737 0.94465 0.95001 1.01006 1.69950 1.35126 1.09152 1.31890 0.85849 0.79891 0.78952 0.79417 1.19027 1.20247 1.18908 1.22520 0.90164 0.94762 0.95034 1.22695 0.96558 0.89404 1.00725 0.91518 0.91869 0.92416 0.78260 0.90680 0.89776 0.91432 0.90635 0.88937 0.91614 0.84927 0.87970 0.88113 0.87846 0.86479 0.90845 0.91264 0.86312 0.93212 0.90048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.33 9.53 37.16 0.35 -0.97 16 2 C 0.06 0.56 3.03 -26.73 -0.08 0.48 16 3 H 0.10 1.16 6.12 -51.93 -0.32 0.84 16 4 O -0.55 -6.34 10.61 -35.23 -0.37 -6.72 16 5 C 0.02 0.22 5.27 -3.82 -0.02 0.20 16 6 N -0.53 -6.11 4.83 -234.02 -1.13 -7.24 16 7 C 0.03 0.39 5.10 -3.70 -0.02 0.37 16 8 C 0.12 1.82 6.61 -3.61 -0.02 1.80 16 9 N -0.61 -10.89 3.00 -173.65 -0.52 -11.41 16 10 C 0.60 13.57 7.49 -12.76 -0.10 13.47 16 11 O -0.54 -13.77 14.84 5.22 0.08 -13.69 16 12 C -0.02 -0.40 6.29 -82.25 -0.52 -0.91 16 13 C -0.22 -4.67 8.39 -39.02 -0.33 -5.00 16 14 C -0.12 -2.87 6.16 -106.89 -0.66 -3.53 16 15 C -0.10 -1.94 10.06 -39.52 -0.40 -2.34 16 16 C -0.15 -3.00 9.97 -39.96 -0.40 -3.40 16 17 C -0.16 -3.33 10.02 -39.50 -0.40 -3.73 16 18 C -0.04 -0.96 8.46 -39.41 -0.33 -1.29 16 19 C 0.09 2.31 6.06 -83.83 -0.51 1.81 16 20 N -0.23 -6.29 2.82 -56.08 -0.16 -6.45 16 21 C -0.34 -9.36 9.06 -15.01 -0.14 -9.50 16 22 H 0.12 3.31 6.86 -52.48 -0.36 2.95 16 23 C 0.05 1.28 4.81 -17.47 -0.08 1.20 16 24 N -0.83 -22.09 10.35 55.50 0.57 -21.52 16 25 Si 0.93 20.20 29.56 -169.99 -5.03 15.18 16 26 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 27 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 28 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 29 C 0.10 1.47 5.15 -3.36 -0.02 1.46 16 30 C 0.03 0.45 4.56 -3.46 -0.02 0.43 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.37 2.84 9.05 45.56 0.41 3.26 16 35 H 0.07 0.56 7.83 -51.93 -0.41 0.15 16 36 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 1.00 5.88 -51.93 -0.31 0.69 16 38 H 0.08 0.76 7.92 -51.93 -0.41 0.35 16 39 H 0.09 1.51 7.04 -51.93 -0.37 1.14 16 40 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.13 2.37 6.11 -52.48 -0.32 2.05 16 42 H 0.10 1.74 8.06 -52.48 -0.42 1.31 16 43 H 0.10 1.63 8.06 -52.48 -0.42 1.20 16 44 H 0.10 1.88 8.06 -52.49 -0.42 1.46 16 45 H 0.12 2.95 6.43 -52.49 -0.34 2.61 16 46 H 0.28 6.97 8.31 -40.82 -0.34 6.63 16 47 H 0.07 0.92 8.12 -51.93 -0.42 0.50 16 48 H 0.12 2.00 4.39 -51.93 -0.23 1.77 16 49 H 0.05 0.77 6.57 -51.93 -0.34 0.43 16 50 H 0.08 0.88 8.11 -51.93 -0.42 0.46 16 LS Contribution 387.00 15.07 5.83 5.83 Total: -1.00 -32.21 387.00 -10.74 -42.95 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: -6.34 Total: 12.54 kcal Atomic # 6 Polarization: -5.80 SS G_CDS: -3.67 Total: -9.47 kcal Atomic # 7 Polarization: -45.39 SS G_CDS: -1.24 Total: -46.62 kcal Atomic # 8 Polarization: -20.11 SS G_CDS: -0.30 Total: -20.41 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.03 Total: 15.18 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.21 -10.74 -42.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070015773.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.705 kcal (2) G-P(sol) polarization free energy of solvation -32.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds