Wall clock time and date at job start Tue Mar 31 2020 05:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47986 * 2 1 4 4 O 1.42905 * 109.47356 * 240.00062 * 2 1 3 5 5 C 1.53007 * 109.46987 * 120.00343 * 2 1 3 6 6 N 1.46903 * 109.46773 * 185.53191 * 5 2 1 7 7 C 1.46897 * 111.00182 * 283.12803 * 6 5 2 8 8 C 1.53236 * 109.34086 * 187.25805 * 7 6 5 9 9 N 1.47076 * 108.52155 * 306.17117 * 8 7 6 10 10 C 1.34771 * 120.88334 * 231.18452 * 9 8 7 11 11 O 1.21669 * 119.99763 * 7.94229 * 10 9 8 12 12 C 1.46894 * 120.00405 * 187.93913 * 10 9 8 13 13 C 1.36115 * 125.43665 * 26.51557 * 12 10 9 14 14 C 1.41697 * 107.75346 * 179.97438 * 13 12 10 15 15 C 1.40020 * 133.35832 * 179.97438 * 14 13 12 16 16 C 1.36572 * 119.83173 * 180.02562 * 15 14 13 17 17 C 1.38851 * 120.60311 * 0.02562 * 16 15 14 18 18 C 1.37841 * 120.63417 * 359.97438 * 17 16 15 19 19 C 1.39088 * 119.81246 * 359.75343 * 18 17 16 20 20 N 1.37833 * 133.16207 * 179.61802 * 19 18 17 21 21 C 1.36889 * 125.61957 * 0.71152 * 20 19 18 22 22 H 1.08004 * 120.00543 * 137.82487 * 21 20 19 23 23 C 1.39010 * 120.00105 * 317.82758 * 21 20 19 24 24 N 1.31344 * 119.99940 * 352.61139 * 23 21 20 25 25 Si 1.86800 * 120.00198 * 172.61064 * 23 21 20 26 26 H 1.48498 * 109.47228 * 60.00277 * 25 23 21 27 27 H 1.48500 * 109.47073 * 180.02562 * 25 23 21 28 28 H 1.48496 * 109.47168 * 299.99943 * 25 23 21 29 29 C 1.47080 * 118.23878 * 51.45782 * 9 8 7 30 30 C 1.46898 * 111.00220 * 47.43714 * 6 5 2 31 31 H 1.08991 * 109.46873 * 300.00171 * 1 2 3 32 32 H 1.09003 * 109.47006 * 60.00105 * 1 2 3 33 33 H 1.08999 * 109.47461 * 179.97438 * 1 2 3 34 34 H 0.96711 * 113.99370 * 300.00452 * 4 2 1 35 35 H 1.08994 * 109.47108 * 65.52979 * 5 2 1 36 36 H 1.08998 * 109.46552 * 305.52927 * 5 2 1 37 37 H 1.08997 * 109.49050 * 67.29658 * 7 6 5 38 38 H 1.09005 * 109.51387 * 307.23027 * 7 6 5 39 39 H 1.08996 * 109.62780 * 186.45802 * 8 7 6 40 40 H 1.09001 * 109.62678 * 65.88071 * 8 7 6 41 41 H 1.08012 * 126.12253 * 359.96832 * 13 12 10 42 42 H 1.08004 * 120.08213 * 359.97438 * 15 14 13 43 43 H 1.08006 * 119.69773 * 180.02562 * 16 15 14 44 44 H 1.08002 * 119.68389 * 180.02562 * 17 16 15 45 45 H 1.07997 * 120.09700 * 179.97438 * 18 17 16 46 46 H 0.97006 * 120.00377 * 185.03419 * 24 23 21 47 47 H 1.09003 * 109.63171 * 68.25128 * 29 9 8 48 48 H 1.08996 * 109.63165 * 188.83527 * 29 9 8 49 49 H 1.09003 * 109.49074 * 292.69848 * 30 6 5 50 50 H 1.08999 * 109.49898 * 52.77913 * 30 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.0400 -0.7214 1.2493 6 7 3.5029 -0.6068 1.3178 7 6 4.1481 -1.5311 0.3759 8 6 5.6632 -1.5131 0.6046 9 7 6.1307 -0.1207 0.5283 10 6 7.1642 0.2194 -0.2669 11 8 7.6303 -0.5957 -1.0407 12 6 7.7280 1.5742 -0.1997 13 6 7.6898 2.3918 0.8879 14 6 8.3408 3.6019 0.5419 15 6 8.6023 4.7867 1.2407 16 6 9.2685 5.8066 0.6233 17 6 9.6898 5.6808 -0.6938 18 6 9.4441 4.5243 -1.4023 19 6 8.7724 3.4696 -0.7932 20 7 8.3828 2.2218 -1.2302 21 6 8.6114 1.7068 -2.4778 22 1 8.9228 0.6786 -2.5890 23 6 8.4425 2.5072 -3.6018 24 7 7.9263 3.7088 -3.4807 25 14 8.9500 1.8737 -5.2842 26 1 8.1824 0.6428 -5.6019 27 1 8.6691 2.9111 -6.3090 28 1 10.4023 1.5641 -5.2792 29 6 5.4443 0.8897 1.3476 30 6 3.9340 0.7781 1.0853 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 1.7209 -1.5953 -1.2329 35 1 1.7597 -1.7736 1.2011 36 1 1.5980 -0.2679 2.1364 37 1 3.9307 -1.2197 -0.6457 38 1 3.7679 -2.5398 0.5375 39 1 6.1566 -2.1077 -0.1642 40 1 5.8897 -1.9220 1.5893 41 1 7.2431 2.1598 1.8436 42 1 8.2773 4.8940 2.2650 43 1 9.4694 6.7195 1.1645 44 1 10.2157 6.4966 -1.1673 45 1 9.7753 4.4359 -2.4264 46 1 7.7407 4.2389 -4.2717 47 1 5.6502 0.7074 2.4024 48 1 5.7929 1.8845 1.0703 49 1 3.7197 1.0574 0.0537 50 1 3.3984 1.4443 1.7616 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070015773.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:03 Heat of formation + Delta-G solvation = -20.967803 kcal Electronic energy + Delta-G solvation = -33207.351687 eV Core-core repulsion = 29006.681013 eV Total energy + Delta-G solvation = -4200.670674 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 357.184 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.30792 -40.94361 -39.69251 -37.81665 -37.40056 -35.73676 -35.12402 -32.87516 -32.23195 -31.86580 -30.65827 -29.98775 -28.66472 -26.82634 -25.80549 -24.86814 -24.29641 -22.97792 -22.50122 -21.80056 -21.38221 -20.20668 -19.39865 -17.99583 -17.65559 -17.28632 -17.17222 -16.86336 -16.61278 -16.42432 -16.23505 -16.04928 -15.90100 -15.37229 -15.27900 -15.17384 -14.76656 -14.52684 -14.40322 -14.24796 -13.81580 -13.63308 -13.54335 -13.33128 -13.20611 -13.19467 -12.88981 -12.73642 -12.66243 -12.38364 -12.34055 -12.23346 -12.06691 -12.04022 -11.86105 -11.76986 -11.42593 -11.31334 -11.03099 -10.86502 -10.29328 -9.77585 -9.05877 -8.91911 -8.58441 -8.29696 -6.43799 0.19799 1.12908 1.25760 1.34232 1.37710 1.45296 1.81483 2.11378 2.44177 2.81817 2.95480 3.05516 3.40547 3.43993 3.68508 3.76558 3.98214 4.06389 4.11289 4.20474 4.23677 4.29904 4.36522 4.45977 4.46437 4.55041 4.56249 4.65225 4.75557 4.78236 4.79779 4.85398 4.89374 4.92040 4.95476 5.05562 5.10766 5.13273 5.17004 5.23344 5.24571 5.38869 5.49196 5.59233 5.79204 5.94528 5.99172 6.01239 6.03356 6.26164 6.29600 6.46786 6.59873 6.79394 6.96214 7.23837 7.47954 8.36732 Molecular weight = 357.18amu Principal moments of inertia in cm(-1) A = 0.009897 B = 0.003578 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2828.602772 B = 7824.649360 C = 8963.369909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.058 3.942 3 H 0.080 0.920 4 O -0.583 6.583 5 C 0.029 3.971 6 N -0.525 5.525 7 C 0.041 3.959 8 C 0.116 3.884 9 N -0.600 5.600 10 C 0.585 3.415 11 O -0.584 6.584 12 C -0.048 4.048 13 C -0.187 4.187 14 C -0.148 4.148 15 C -0.087 4.087 16 C -0.154 4.154 17 C -0.142 4.142 18 C -0.083 4.083 19 C 0.063 3.937 20 N -0.269 5.269 21 C -0.371 4.371 22 H 0.090 0.910 23 C 0.014 3.986 24 N -0.857 5.857 25 Si 0.994 3.006 26 H -0.272 1.272 27 H -0.260 1.260 28 H -0.259 1.259 29 C 0.094 3.906 30 C 0.043 3.957 31 H 0.081 0.919 32 H 0.048 0.952 33 H 0.074 0.926 34 H 0.385 0.615 35 H 0.096 0.904 36 H 0.105 0.895 37 H 0.041 0.959 38 H 0.108 0.892 39 H 0.070 0.930 40 H 0.091 0.909 41 H 0.174 0.826 42 H 0.145 0.855 43 H 0.147 0.853 44 H 0.131 0.869 45 H 0.093 0.907 46 H 0.283 0.717 47 H 0.100 0.900 48 H 0.099 0.901 49 H 0.017 0.983 50 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.495 -4.267 11.947 18.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.002 4.002 3 H 0.097 0.903 4 O -0.391 6.391 5 C -0.099 4.099 6 N -0.248 5.248 7 C -0.088 4.088 8 C -0.006 4.006 9 N -0.333 5.333 10 C 0.375 3.625 11 O -0.465 6.465 12 C -0.164 4.164 13 C -0.214 4.214 14 C -0.153 4.153 15 C -0.105 4.105 16 C -0.173 4.173 17 C -0.162 4.162 18 C -0.103 4.103 19 C -0.051 4.051 20 N 0.069 4.931 21 C -0.499 4.499 22 H 0.108 0.892 23 C -0.194 4.194 24 N -0.488 5.488 25 Si 0.815 3.185 26 H -0.197 1.197 27 H -0.184 1.184 28 H -0.183 1.183 29 C -0.028 4.028 30 C -0.085 4.085 31 H 0.100 0.900 32 H 0.067 0.933 33 H 0.093 0.907 34 H 0.234 0.766 35 H 0.114 0.886 36 H 0.123 0.877 37 H 0.059 0.941 38 H 0.126 0.874 39 H 0.088 0.912 40 H 0.109 0.891 41 H 0.191 0.809 42 H 0.163 0.837 43 H 0.165 0.835 44 H 0.149 0.851 45 H 0.111 0.889 46 H 0.093 0.907 47 H 0.118 0.882 48 H 0.117 0.883 49 H 0.035 0.965 50 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -12.808 -4.239 11.442 17.690 hybrid contribution -0.225 -0.597 -2.264 2.352 sum -13.034 -4.836 9.178 16.658 Atomic orbital electron populations 1.22359 0.94449 1.03479 1.02873 1.22794 0.94769 0.96938 0.85715 0.90252 1.86683 1.77116 1.30157 1.45180 1.23046 0.86609 1.02508 0.97738 1.62280 1.07131 1.05153 1.50234 1.22607 0.92608 0.98198 0.95366 1.21809 0.94752 0.81290 1.02746 1.47796 1.31232 1.10526 1.43773 1.17421 0.79915 0.85769 0.79365 1.90679 1.63007 1.53262 1.39560 1.20206 1.07215 0.96128 0.92821 1.20949 1.09040 0.92692 0.98704 1.18451 1.06175 0.97047 0.93630 1.20479 0.99162 0.91172 0.99726 1.20751 1.01841 0.99844 0.94829 1.20978 1.03134 0.96369 0.95769 1.20221 0.99289 0.92582 0.98215 1.18780 1.03384 0.88899 0.94046 1.40061 1.34103 1.10544 1.08403 1.19900 1.49383 0.98904 0.81711 0.89205 1.26480 0.94064 0.95083 1.03786 1.70032 1.36233 1.09919 1.32601 0.85003 0.79545 0.78379 0.75576 1.19710 1.18357 1.18333 1.22685 0.91282 0.92983 0.95851 1.22586 0.95257 0.91100 0.99587 0.90037 0.93253 0.90740 0.76620 0.88566 0.87718 0.94111 0.87352 0.91170 0.89131 0.80928 0.83748 0.83522 0.85105 0.88883 0.90693 0.88221 0.88300 0.96499 0.87083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.16 9.53 71.98 0.69 -1.47 16 2 C 0.06 1.02 3.03 30.60 0.09 1.11 16 3 H 0.08 1.77 6.12 -2.39 -0.01 1.75 16 4 O -0.58 -13.25 10.61 -148.98 -1.58 -14.83 16 5 C 0.03 0.41 5.27 86.31 0.46 0.86 16 6 N -0.52 -10.68 4.83 -894.31 -4.32 -15.00 16 7 C 0.04 0.96 5.10 86.38 0.44 1.40 16 8 C 0.12 3.43 6.61 86.35 0.57 4.00 16 9 N -0.60 -21.68 3.00 -821.54 -2.47 -24.15 16 10 C 0.58 28.18 7.49 86.51 0.65 28.83 16 11 O -0.58 -32.36 14.84 -4.25 -0.06 -32.42 16 12 C -0.05 -2.44 6.29 39.91 0.25 -2.18 16 13 C -0.19 -8.01 8.39 22.63 0.19 -7.82 16 14 C -0.15 -6.80 6.16 -21.33 -0.13 -6.93 16 15 C -0.09 -3.22 10.06 22.31 0.22 -2.99 16 16 C -0.15 -5.43 9.97 22.03 0.22 -5.21 16 17 C -0.14 -5.77 10.02 22.32 0.22 -5.55 16 18 C -0.08 -4.19 8.46 22.38 0.19 -4.00 16 19 C 0.06 3.38 6.06 39.06 0.24 3.61 16 20 N -0.27 -15.47 2.82 -331.34 -0.94 -16.41 16 21 C -0.37 -22.29 9.06 84.09 0.76 -21.53 16 22 H 0.09 5.66 6.86 -2.91 -0.02 5.64 16 23 C 0.01 0.77 4.81 84.95 0.41 1.18 16 24 N -0.86 -48.28 10.35 21.67 0.22 -48.05 16 25 Si 0.99 44.04 29.56 68.60 2.03 46.07 16 26 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 27 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 28 H -0.26 -11.08 7.11 99.48 0.71 -10.38 16 29 C 0.09 2.68 5.15 86.50 0.45 3.13 16 30 C 0.04 1.06 4.56 86.54 0.39 1.45 16 31 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.38 5.58 9.05 -74.05 -0.67 4.91 16 35 H 0.10 1.01 7.83 -2.39 -0.02 0.99 16 36 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.04 1.22 5.88 -2.39 -0.01 1.20 16 38 H 0.11 1.87 7.92 -2.38 -0.02 1.85 16 39 H 0.07 2.40 7.04 -2.39 -0.02 2.38 16 40 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 41 H 0.17 5.74 6.11 -2.90 -0.02 5.72 16 42 H 0.14 4.11 8.06 -2.91 -0.02 4.08 16 43 H 0.15 3.87 8.06 -2.91 -0.02 3.85 16 44 H 0.13 4.47 8.06 -2.91 -0.02 4.44 16 45 H 0.09 5.02 6.43 -2.91 -0.02 5.00 16 46 H 0.28 14.77 8.31 -92.70 -0.77 14.00 16 47 H 0.10 2.29 8.12 -2.39 -0.02 2.27 16 48 H 0.10 3.25 4.39 -2.39 -0.01 3.23 16 49 H 0.02 0.53 6.57 -2.39 -0.02 0.51 16 50 H 0.11 2.06 8.11 -2.39 -0.02 2.04 16 Total: -1.00 -78.77 387.00 -0.50 -79.27 By element: Atomic # 1 Polarization: 37.33 SS G_CDS: 0.31 Total: 37.63 kcal Atomic # 6 Polarization: -18.43 SS G_CDS: 6.31 Total: -12.12 kcal Atomic # 7 Polarization: -96.11 SS G_CDS: -7.50 Total: -103.60 kcal Atomic # 8 Polarization: -45.61 SS G_CDS: -1.64 Total: -47.25 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -78.77 -0.50 -79.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070015773.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.303 kcal (2) G-P(sol) polarization free energy of solvation -78.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds