Wall clock time and date at job start Tue Mar 31 2020 05:14:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.47191 * 2 1 4 4 O 1.42901 * 109.47130 * 119.99835 * 2 1 3 5 5 C 1.53003 * 109.47052 * 239.99443 * 2 1 3 6 6 N 1.46896 * 109.46862 * 179.97438 * 5 2 1 7 7 C 1.46899 * 111.00556 * 294.30213 * 6 5 2 8 8 C 1.53236 * 109.34326 * 172.74646 * 7 6 5 9 9 N 1.47083 * 108.51904 * 53.83197 * 8 7 6 10 10 C 1.34776 * 120.87894 * 128.79226 * 9 8 7 11 11 O 1.21667 * 119.99951 * 180.16235 * 10 9 8 12 12 C 1.46889 * 120.00084 * 0.16733 * 10 9 8 13 13 C 1.36126 * 125.43633 * 25.95856 * 12 10 9 14 14 C 1.41701 * 107.74653 * 179.90473 * 13 12 10 15 15 C 1.40018 * 133.35205 * 180.09487 * 14 13 12 16 16 C 1.36569 * 119.83440 * 180.28244 * 15 14 13 17 17 C 1.38852 * 120.60096 * 359.97438 * 16 15 14 18 18 C 1.37846 * 120.63381 * 359.97438 * 17 16 15 19 19 C 1.39086 * 119.81010 * 0.03656 * 18 17 16 20 20 N 1.37842 * 133.16293 * 179.97438 * 19 18 17 21 21 C 1.36891 * 125.62034 * 359.95508 * 20 19 18 22 22 H 1.07992 * 120.00047 * 137.07349 * 21 20 19 23 23 C 1.39017 * 119.99892 * 317.08517 * 21 20 19 24 24 N 1.31346 * 119.99558 * 158.36191 * 23 21 20 25 25 Si 1.86794 * 120.00065 * 338.35869 * 23 21 20 26 26 H 1.48509 * 109.47118 * 95.16325 * 25 23 21 27 27 H 1.48500 * 109.47481 * 215.16107 * 25 23 21 28 28 H 1.48497 * 109.47430 * 335.16611 * 25 23 21 29 29 C 1.47076 * 118.23846 * 308.81435 * 9 8 7 30 30 C 1.46905 * 111.00042 * 169.99991 * 6 5 2 31 31 H 1.09004 * 109.47489 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47197 * 300.00239 * 1 2 3 33 33 H 1.09002 * 109.46937 * 60.00056 * 1 2 3 34 34 H 0.96701 * 113.99781 * 59.99865 * 4 2 1 35 35 H 1.09002 * 109.46840 * 60.00441 * 5 2 1 36 36 H 1.08994 * 109.47578 * 300.00321 * 5 2 1 37 37 H 1.08999 * 109.49457 * 292.70980 * 7 6 5 38 38 H 1.09005 * 109.49076 * 52.78959 * 7 6 5 39 39 H 1.08999 * 109.62873 * 294.12369 * 8 7 6 40 40 H 1.09001 * 109.78847 * 173.63557 * 8 7 6 41 41 H 1.08000 * 126.12510 * 0.02562 * 13 12 10 42 42 H 1.08011 * 120.08188 * 0.26192 * 15 14 13 43 43 H 1.08005 * 119.70206 * 179.97438 * 16 15 14 44 44 H 1.08007 * 119.68647 * 180.02562 * 17 16 15 45 45 H 1.07992 * 120.09619 * 180.02562 * 18 17 16 46 46 H 0.97006 * 119.99591 * 179.97438 * 24 23 21 47 47 H 1.09002 * 109.63095 * 291.47436 * 29 9 8 48 48 H 1.08999 * 109.62741 * 170.89330 * 29 9 8 49 49 H 1.09001 * 109.49048 * 307.22006 * 30 6 5 50 50 H 1.09000 * 109.48799 * 67.29480 * 30 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0400 -0.7214 -1.2492 6 7 3.5089 -0.7208 -1.2495 7 6 4.0349 0.6439 -1.3861 8 6 5.5559 0.6226 -1.2007 9 7 6.1266 -0.3602 -2.1344 10 6 7.1446 -0.0271 -2.9524 11 8 7.6026 -0.8519 -3.7206 12 6 7.7013 1.3317 -2.9163 13 6 7.6671 2.1705 -1.8447 14 6 8.3101 3.3763 -2.2193 15 6 8.5730 4.5751 -1.5453 16 6 9.2249 5.5878 -2.1892 17 6 9.6312 5.4405 -3.5087 18 6 9.3847 4.2695 -4.1930 19 6 8.7222 3.2241 -3.5583 20 7 8.3399 1.9642 -3.9662 21 6 8.5552 1.4285 -5.2074 22 1 8.8880 0.4056 -5.3038 23 6 8.3457 2.2013 -6.3439 24 7 8.9299 1.8776 -7.4749 25 14 7.2335 3.6998 -6.2624 26 1 8.0552 4.9138 -6.0246 27 1 6.4999 3.8422 -7.5457 28 1 6.2613 3.5349 -5.1521 29 6 5.5565 -1.7159 -2.1521 30 6 4.0355 -1.6025 -2.3000 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.7209 -1.5952 1.2329 35 1 1.6767 -0.2075 -2.1392 36 1 1.6766 -1.7490 -1.2492 37 1 3.7947 1.0289 -2.3771 38 1 3.5851 1.2847 -0.6276 39 1 5.7960 0.3369 -0.1765 40 1 5.9672 1.6097 -1.4115 41 1 7.2299 1.9548 -0.8810 42 1 8.2608 4.6987 -0.5187 43 1 9.4262 6.5117 -1.6673 44 1 10.1460 6.2509 -4.0035 45 1 9.7049 4.1642 -5.2189 46 1 8.7834 2.4166 -8.2680 47 1 5.7966 -2.2263 -1.2194 48 1 5.9656 -2.2741 -2.9941 49 1 3.5860 -2.5908 -2.2044 50 1 3.7952 -1.1862 -3.2783 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070015777.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:08 Heat of formation + Delta-G solvation = 14.085914 kcal Electronic energy + Delta-G solvation = -32954.687609 eV Core-core repulsion = 28755.536978 eV Total energy + Delta-G solvation = -4199.150631 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 357.184 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.95123 -39.64754 -38.34438 -36.90261 -36.05305 -34.44465 -33.52610 -31.85554 -31.27812 -30.94454 -29.25502 -28.72145 -27.67012 -25.08139 -24.97042 -23.71385 -23.04661 -21.58420 -21.17705 -20.77724 -19.88657 -18.94894 -17.99803 -16.86927 -16.33833 -16.22397 -15.92874 -15.73100 -15.41806 -15.12321 -15.00830 -14.69361 -14.55395 -14.43526 -13.99233 -13.80065 -13.65686 -13.29923 -13.08746 -12.91908 -12.74954 -12.63836 -12.44409 -12.33746 -12.28373 -11.94541 -11.82865 -11.45838 -11.37897 -11.27210 -11.05751 -10.98689 -10.85367 -10.73359 -10.44298 -10.20293 -10.18681 -9.89744 -9.43442 -9.20902 -8.66123 -8.61108 -8.19828 -7.37208 -6.95961 -6.89990 -4.49895 1.60999 2.47550 2.82191 3.01845 3.08625 3.16395 3.18936 3.61119 3.88920 3.99670 4.27781 4.33297 4.43500 4.57693 4.75404 4.79244 4.82834 4.94085 5.02663 5.04912 5.20560 5.24311 5.34734 5.39956 5.43043 5.49723 5.56403 5.61495 5.70162 5.70905 5.73758 5.82093 5.88101 5.95073 5.96260 6.07423 6.13014 6.22306 6.40463 6.56125 6.65422 6.78220 6.81381 6.87084 6.93470 7.19428 7.24794 7.33306 7.50426 7.58864 7.60531 7.80992 7.91999 8.24559 8.69598 8.81004 9.05351 10.14784 Molecular weight = 357.18amu Principal moments of inertia in cm(-1) A = 0.011764 B = 0.003286 C = 0.002997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2379.498084 B = 8519.090356 C = 9338.989364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.105 3.895 3 H 0.098 0.902 4 O -0.549 6.549 5 C 0.022 3.978 6 N -0.527 5.527 7 C 0.039 3.961 8 C 0.081 3.919 9 N -0.610 5.610 10 C 0.590 3.410 11 O -0.528 6.528 12 C -0.010 4.010 13 C -0.218 4.218 14 C -0.115 4.115 15 C -0.084 4.084 16 C -0.154 4.154 17 C -0.139 4.139 18 C -0.092 4.092 19 C 0.047 3.953 20 N -0.247 5.247 21 C -0.340 4.340 22 H 0.133 0.867 23 C 0.082 3.918 24 N -0.819 5.819 25 Si 0.867 3.133 26 H -0.245 1.245 27 H -0.281 1.281 28 H -0.257 1.257 29 C 0.123 3.877 30 C 0.042 3.958 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.371 0.629 35 H 0.041 0.959 36 H 0.076 0.924 37 H 0.038 0.962 38 H 0.086 0.914 39 H 0.073 0.927 40 H 0.130 0.870 41 H 0.147 0.853 42 H 0.110 0.890 43 H 0.108 0.892 44 H 0.112 0.888 45 H 0.117 0.883 46 H 0.286 0.714 47 H 0.071 0.929 48 H 0.095 0.905 49 H 0.083 0.917 50 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.887 -1.057 12.488 18.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.046 3.954 3 H 0.116 0.884 4 O -0.353 6.353 5 C -0.107 4.107 6 N -0.252 5.252 7 C -0.090 4.090 8 C -0.042 4.042 9 N -0.346 5.346 10 C 0.381 3.619 11 O -0.405 6.405 12 C -0.127 4.127 13 C -0.244 4.244 14 C -0.120 4.120 15 C -0.103 4.103 16 C -0.173 4.173 17 C -0.159 4.159 18 C -0.112 4.112 19 C -0.065 4.065 20 N 0.092 4.908 21 C -0.468 4.468 22 H 0.150 0.850 23 C -0.132 4.132 24 N -0.448 5.448 25 Si 0.690 3.310 26 H -0.169 1.169 27 H -0.207 1.207 28 H -0.181 1.181 29 C 0.000 4.000 30 C -0.087 4.087 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.217 0.783 35 H 0.059 0.941 36 H 0.095 0.905 37 H 0.056 0.944 38 H 0.104 0.896 39 H 0.092 0.908 40 H 0.148 0.852 41 H 0.164 0.836 42 H 0.128 0.872 43 H 0.127 0.873 44 H 0.130 0.870 45 H 0.135 0.865 46 H 0.097 0.903 47 H 0.090 0.910 48 H 0.113 0.887 49 H 0.101 0.899 50 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -13.077 -1.298 11.993 17.791 hybrid contribution -1.243 0.373 -1.264 1.812 sum -14.320 -0.924 10.729 17.917 Atomic orbital electron populations 1.22494 0.96452 1.02540 1.02852 1.21910 0.92058 0.96912 0.84543 0.88413 1.86622 1.77250 1.28573 1.42837 1.22871 0.88643 1.01275 0.97891 1.61932 1.06270 1.10003 1.46953 1.22586 0.96167 0.89650 1.00557 1.22814 0.91844 0.96135 0.93369 1.47717 1.34781 1.12193 1.39891 1.17205 0.79080 0.86351 0.79289 1.90780 1.59918 1.51291 1.38462 1.19723 1.05535 0.95174 0.92282 1.20732 1.11194 0.93591 0.98915 1.17945 1.05129 0.95353 0.93571 1.20125 0.99584 0.92190 0.98432 1.20353 1.03000 0.98736 0.95193 1.20550 1.03559 0.96769 0.95049 1.20209 0.99457 0.91947 0.99582 1.18398 1.04926 0.88914 0.94309 1.40210 1.32917 1.08653 1.09004 1.19679 1.46288 1.01875 0.78916 0.84954 1.25511 0.95024 0.98058 0.94649 1.69728 1.34921 1.38638 1.01476 0.87005 0.82271 0.82972 0.78743 1.16898 1.20669 1.18055 1.21557 0.91235 0.84045 1.03131 1.22506 0.95849 0.97388 0.92913 0.92300 0.91552 0.91682 0.78286 0.94120 0.90532 0.94419 0.89554 0.90830 0.85235 0.83553 0.87192 0.87344 0.87039 0.86491 0.90322 0.91035 0.88698 0.89890 0.94385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.15 9.53 37.16 0.35 -0.79 16 2 C 0.11 0.86 3.46 -26.73 -0.09 0.76 16 3 H 0.10 0.87 6.40 -51.93 -0.33 0.54 16 4 O -0.55 -5.11 13.20 -35.23 -0.47 -5.58 16 5 C 0.02 0.19 4.62 -3.82 -0.02 0.17 16 6 N -0.53 -5.93 4.50 -234.32 -1.05 -6.98 16 7 C 0.04 0.48 5.46 -3.70 -0.02 0.46 16 8 C 0.08 1.14 5.40 -3.60 -0.02 1.12 16 9 N -0.61 -10.42 3.01 -173.93 -0.52 -10.94 16 10 C 0.59 12.98 7.53 -12.76 -0.10 12.88 16 11 O -0.53 -13.39 14.84 5.22 0.08 -13.31 16 12 C -0.01 -0.22 6.44 -82.25 -0.53 -0.75 16 13 C -0.22 -4.34 8.49 -39.02 -0.33 -4.67 16 14 C -0.12 -2.44 6.16 -106.89 -0.66 -3.10 16 15 C -0.08 -1.52 10.06 -39.52 -0.40 -1.92 16 16 C -0.15 -2.66 9.97 -39.96 -0.40 -3.06 16 17 C -0.14 -2.64 10.02 -39.50 -0.40 -3.03 16 18 C -0.09 -2.08 6.89 -39.41 -0.27 -2.35 16 19 C 0.05 1.14 5.19 -83.83 -0.44 0.70 16 20 N -0.25 -6.35 2.39 -56.08 -0.13 -6.48 16 21 C -0.34 -9.55 9.40 -15.00 -0.14 -9.69 16 22 H 0.13 4.10 7.12 -52.49 -0.37 3.73 16 23 C 0.08 2.21 4.83 -17.47 -0.08 2.12 16 24 N -0.82 -22.48 13.95 55.50 0.77 -21.71 16 25 Si 0.87 20.65 24.57 -169.99 -4.18 16.47 16 26 H -0.24 -5.50 5.71 56.52 0.32 -5.18 16 27 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 28 H -0.26 -6.40 7.11 56.52 0.40 -6.00 16 29 C 0.12 1.77 6.60 -3.61 -0.02 1.74 16 30 C 0.04 0.50 5.62 -3.70 -0.02 0.48 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.37 2.23 9.05 45.56 0.41 2.65 16 35 H 0.04 0.37 8.12 -51.93 -0.42 -0.05 16 36 H 0.08 0.57 7.97 -51.93 -0.41 0.16 16 37 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.09 0.93 6.16 -51.93 -0.32 0.61 16 39 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.13 1.97 3.54 -51.93 -0.18 1.78 16 41 H 0.15 2.35 5.62 -52.49 -0.30 2.05 16 42 H 0.11 1.62 8.06 -52.48 -0.42 1.20 16 43 H 0.11 1.51 8.06 -52.48 -0.42 1.09 16 44 H 0.11 1.80 8.06 -52.48 -0.42 1.38 16 45 H 0.12 2.72 6.03 -52.49 -0.32 2.41 16 46 H 0.29 7.15 8.31 -40.82 -0.34 6.81 16 47 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 48 H 0.09 1.49 7.06 -51.93 -0.37 1.13 16 49 H 0.08 0.80 7.99 -51.93 -0.41 0.38 16 50 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 386.62 15.07 5.83 5.83 Total: -1.00 -32.24 386.62 -9.72 -41.96 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -6.47 Total: 9.66 kcal Atomic # 6 Polarization: -5.33 SS G_CDS: -3.58 Total: -8.91 kcal Atomic # 7 Polarization: -45.18 SS G_CDS: -0.94 Total: -46.11 kcal Atomic # 8 Polarization: -18.50 SS G_CDS: -0.39 Total: -18.89 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -4.18 Total: 16.47 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.24 -9.72 -41.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070015777.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.046 kcal (2) G-P(sol) polarization free energy of solvation -32.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds