Wall clock time and date at job start Tue Mar 31 2020 05:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42895 * 109.47463 * 2 1 4 4 C 1.42901 * 114.00480 * 180.02562 * 3 2 1 5 5 C 1.53119 * 109.52176 * 269.87156 * 4 3 2 6 6 C 1.53040 * 109.27644 * 182.50023 * 5 4 3 7 7 N 1.46852 * 109.57494 * 59.08403 * 6 5 4 8 8 C 1.46899 * 111.00064 * 174.19148 * 7 6 5 9 9 C 1.50700 * 109.46927 * 190.77899 * 8 7 6 10 10 N 1.29832 * 118.35055 * 5.93371 * 9 8 7 11 11 C 1.35638 * 121.62413 * 179.71518 * 10 9 8 12 12 C 1.39631 * 121.61927 * 180.24798 * 11 10 9 13 13 C 1.37712 * 119.69143 * 180.31043 * 12 11 10 14 14 C 1.38880 * 120.82792 * 0.02562 * 13 12 11 15 15 C 1.37799 * 120.56819 * 0.02562 * 14 13 12 16 16 C 1.39367 * 119.51807 * 359.97438 * 15 14 13 17 17 C 1.46960 * 121.90590 * 179.97438 * 16 15 14 18 18 O 1.21718 * 121.28586 * 0.04044 * 17 16 15 19 19 N 1.35341 * 117.42342 * 180.02562 * 17 16 15 20 20 C 1.37105 * 119.71378 * 180.02562 * 19 17 16 21 21 H 1.08001 * 119.99952 * 221.23689 * 20 19 17 22 22 C 1.39075 * 120.00566 * 41.23462 * 20 19 17 23 23 N 1.31256 * 119.99742 * 20.03577 * 22 20 19 24 24 Si 1.86792 * 120.00304 * 200.03700 * 22 20 19 25 25 H 1.48500 * 109.47349 * 0.02562 * 24 22 20 26 26 H 1.48510 * 109.47034 * 120.00066 * 24 22 20 27 27 H 1.48493 * 109.47421 * 239.99682 * 24 22 20 28 28 C 1.46841 * 111.19771 * 298.29378 * 7 6 5 29 29 C 1.53036 * 109.52832 * 61.73853 * 28 7 6 30 30 H 1.09004 * 109.47019 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47324 * 60.00165 * 1 2 3 32 32 H 1.08999 * 109.47119 * 299.99671 * 1 2 3 33 33 H 1.08999 * 109.47452 * 120.00609 * 2 1 3 34 34 H 1.09002 * 109.47034 * 239.99795 * 2 1 3 35 35 H 1.08998 * 109.52253 * 29.99608 * 4 3 2 36 36 H 1.09001 * 109.50341 * 302.38348 * 5 4 3 37 37 H 1.09008 * 109.49926 * 62.49748 * 5 4 3 38 38 H 1.08996 * 109.41059 * 299.07396 * 6 5 4 39 39 H 1.08994 * 109.45525 * 179.12431 * 6 5 4 40 40 H 1.08996 * 109.47096 * 310.77686 * 8 7 6 41 41 H 1.08999 * 109.46798 * 70.78397 * 8 7 6 42 42 H 1.08000 * 120.15981 * 0.29751 * 12 11 10 43 43 H 1.07998 * 119.59004 * 179.97438 * 13 12 11 44 44 H 1.07994 * 119.71746 * 180.02562 * 14 13 12 45 45 H 1.07995 * 120.23968 * 180.02562 * 15 14 13 46 46 H 0.96997 * 120.00481 * 179.97438 * 23 22 20 47 47 H 1.09005 * 109.46436 * 301.71975 * 28 7 6 48 48 H 1.09000 * 109.45507 * 181.74643 * 28 7 6 49 49 H 1.08999 * 109.50736 * 180.87689 * 29 28 7 50 50 H 1.09005 * 109.53340 * 60.77870 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.9413 1.5035 1.4424 6 6 5.4606 1.6871 1.4355 7 7 5.8025 2.9330 0.7374 8 6 7.2419 3.2111 0.8312 9 6 7.5161 4.6100 0.3424 10 7 6.5052 5.3683 0.0447 11 6 6.6753 6.6398 -0.3958 12 6 5.5878 7.4570 -0.7111 13 6 5.8065 8.7399 -1.1611 14 6 7.0967 9.2330 -1.3065 15 6 8.1861 8.4456 -1.0029 16 6 7.9868 7.1442 -0.5458 17 6 9.1101 6.2592 -0.2074 18 8 10.2636 6.6330 -0.3139 19 7 8.8125 5.0126 0.2274 20 6 9.8244 4.1480 0.5567 21 1 9.7617 3.1089 0.2692 22 6 10.9315 4.6091 1.2609 23 7 10.8553 5.7266 1.9451 24 14 12.5269 3.6380 1.2330 25 1 12.3534 2.4247 0.3945 26 1 13.6097 4.4809 0.6651 27 1 12.8864 3.2367 2.6168 28 6 5.3643 2.8941 -0.6636 29 6 3.8419 2.7480 -0.7194 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.8933 -0.5139 -0.8900 35 1 3.8640 0.6020 -0.5145 36 1 3.4771 2.3382 1.9676 37 1 3.6888 0.5702 1.9459 38 1 5.9250 0.8446 0.9231 39 1 5.8253 1.7340 2.4616 40 1 7.5628 3.1194 1.8689 41 1 7.7906 2.4974 0.2167 42 1 4.5799 7.0846 -0.6027 43 1 4.9643 9.3704 -1.4049 44 1 7.2475 10.2420 -1.6605 45 1 9.1871 8.8345 -1.1175 46 1 11.6273 6.0481 2.4365 47 1 5.8291 2.0458 -1.1662 48 1 5.6590 3.8176 -1.1619 49 1 3.5184 2.7036 -1.7593 50 1 3.3756 3.6029 -0.2295 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071821792.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:30 Heat of formation + Delta-G solvation = -18.324809 kcal Electronic energy + Delta-G solvation = -32674.998468 eV Core-core repulsion = 28474.442403 eV Total energy + Delta-G solvation = -4200.556065 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 357.184 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.51697 -39.28889 -37.66940 -37.34762 -36.02787 -33.76369 -32.92737 -31.88015 -30.94097 -30.62308 -30.32898 -28.94054 -26.49926 -25.76985 -23.55846 -23.13837 -22.71801 -22.65467 -21.41594 -20.74967 -19.67628 -18.74805 -17.81138 -16.94693 -16.88118 -15.80130 -15.67529 -15.51044 -15.10121 -14.96606 -14.47931 -14.32236 -14.28960 -13.92025 -13.79761 -13.62325 -13.53133 -13.28992 -12.98285 -12.58355 -12.43973 -12.40929 -12.23526 -12.11065 -11.85526 -11.71705 -11.62278 -11.33101 -11.18323 -11.09668 -11.01810 -11.00656 -10.87538 -10.78532 -10.57059 -10.52637 -10.27686 -9.54356 -9.41982 -8.91853 -8.73463 -8.34864 -8.32974 -7.93960 -7.02137 -6.68481 -4.53309 1.52506 1.69460 3.02559 3.11320 3.15222 3.25574 3.58015 3.70773 3.92024 4.02856 4.47733 4.68711 4.80654 4.82259 4.89616 4.94608 5.05573 5.13933 5.16032 5.19029 5.30540 5.37174 5.41237 5.46961 5.52207 5.58817 5.61428 5.66298 5.71445 5.79651 5.87316 5.88083 5.88597 5.91918 6.00864 6.08434 6.14276 6.21992 6.27501 6.34782 6.48881 6.53179 6.72216 6.83829 7.04624 7.08896 7.16062 7.23115 7.32632 7.45490 7.53258 7.61810 8.12687 8.47241 8.72861 9.21117 9.52071 10.32632 Molecular weight = 357.18amu Principal moments of inertia in cm(-1) A = 0.009747 B = 0.003351 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2872.092933 B = 8353.581789 C =10890.506879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 O -0.382 6.382 4 C 0.090 3.910 5 C -0.133 4.133 6 C 0.059 3.941 7 N -0.515 5.515 8 C 0.126 3.874 9 C 0.362 3.638 10 N -0.541 5.541 11 C 0.167 3.833 12 C -0.129 4.129 13 C -0.091 4.091 14 C -0.176 4.176 15 C -0.039 4.039 16 C -0.210 4.210 17 C 0.520 3.480 18 O -0.504 6.504 19 N -0.352 5.352 20 C -0.387 4.387 21 H 0.107 0.893 22 C 0.080 3.920 23 N -0.798 5.798 24 Si 0.927 3.073 25 H -0.263 1.263 26 H -0.273 1.273 27 H -0.277 1.277 28 C 0.062 3.938 29 C -0.106 4.106 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.045 0.955 34 H 0.044 0.956 35 H 0.052 0.948 36 H 0.081 0.919 37 H 0.061 0.939 38 H 0.029 0.971 39 H 0.079 0.921 40 H 0.105 0.895 41 H 0.057 0.943 42 H 0.125 0.875 43 H 0.116 0.884 44 H 0.115 0.885 45 H 0.122 0.878 46 H 0.279 0.721 47 H 0.020 0.980 48 H 0.101 0.899 49 H 0.065 0.935 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.556 -8.532 -2.682 16.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.302 6.302 4 C 0.032 3.968 5 C -0.171 4.171 6 C -0.070 4.070 7 N -0.239 5.239 8 C -0.003 4.003 9 C 0.098 3.902 10 N -0.269 5.269 11 C 0.051 3.949 12 C -0.149 4.149 13 C -0.111 4.111 14 C -0.196 4.196 15 C -0.059 4.059 16 C -0.218 4.218 17 C 0.315 3.685 18 O -0.378 6.378 19 N -0.056 5.056 20 C -0.513 4.513 21 H 0.124 0.876 22 C -0.137 4.137 23 N -0.426 5.426 24 Si 0.751 3.249 25 H -0.187 1.187 26 H -0.199 1.199 27 H -0.203 1.203 28 C -0.066 4.066 29 C -0.143 4.143 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.100 0.900 37 H 0.080 0.920 38 H 0.047 0.953 39 H 0.097 0.903 40 H 0.123 0.877 41 H 0.075 0.925 42 H 0.143 0.857 43 H 0.134 0.866 44 H 0.133 0.867 45 H 0.140 0.860 46 H 0.090 0.910 47 H 0.038 0.962 48 H 0.119 0.881 49 H 0.084 0.916 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -13.802 -7.777 -2.335 16.013 hybrid contribution 2.243 -0.819 -0.303 2.406 sum -11.559 -8.596 -2.638 14.644 Atomic orbital electron populations 1.21737 0.94012 1.01942 1.03118 1.22449 0.95390 0.84459 0.99719 1.87938 1.21421 1.25738 1.95078 1.22229 0.80365 0.98413 0.95760 1.22040 0.95602 1.02316 0.97179 1.22023 0.95126 0.90322 0.99484 1.61555 1.14909 1.32936 1.14523 1.20719 0.87431 0.89859 1.02305 1.22698 0.80560 0.95694 0.91199 1.68499 1.28610 1.04358 1.25420 1.18858 0.91227 0.90764 0.94065 1.20603 0.97670 0.93485 1.03156 1.20975 0.96565 0.95213 0.98304 1.20831 0.92474 0.99862 1.06399 1.20876 0.98930 0.91998 0.94078 1.20862 0.93844 0.96954 1.10130 1.18190 0.88676 0.82167 0.79499 1.90663 1.21310 1.73681 1.52112 1.42275 1.05342 1.12915 1.45060 1.19587 0.99054 0.93405 1.39271 0.87570 1.25394 0.99995 0.95879 0.92445 1.69815 1.31418 1.19818 1.21539 0.85915 0.81159 0.79582 0.78245 1.18743 1.19863 1.20261 1.22141 0.93881 1.01746 0.88850 1.21581 0.95726 0.97118 0.99922 0.91419 0.91920 0.91861 0.93646 0.93755 0.92961 0.89988 0.91986 0.95306 0.90293 0.87702 0.92489 0.85685 0.86559 0.86698 0.85993 0.91004 0.96210 0.88058 0.91599 0.89792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 10.28 37.15 0.38 -0.77 16 2 C 0.06 0.52 6.47 37.15 0.24 0.76 16 3 O -0.38 -4.66 9.99 -35.23 -0.35 -5.01 16 4 C 0.09 1.06 2.68 -26.61 -0.07 0.99 16 5 C -0.13 -1.54 5.72 -26.65 -0.15 -1.70 16 6 C 0.06 0.73 5.46 -3.83 -0.02 0.71 16 7 N -0.51 -7.95 4.26 -236.12 -1.01 -8.95 16 8 C 0.13 2.23 4.20 -4.98 -0.02 2.21 16 9 C 0.36 7.87 7.04 -154.87 -1.09 6.78 16 10 N -0.54 -11.49 7.49 -8.10 -0.06 -11.55 16 11 C 0.17 3.60 6.63 -84.50 -0.56 3.04 16 12 C -0.13 -2.34 10.03 -39.25 -0.39 -2.73 16 13 C -0.09 -1.46 10.00 -39.54 -0.40 -1.86 16 14 C -0.18 -3.01 10.02 -39.50 -0.40 -3.41 16 15 C -0.04 -0.82 9.68 -39.32 -0.38 -1.20 16 16 C -0.21 -4.95 5.89 -104.78 -0.62 -5.57 16 17 C 0.52 13.91 6.93 -12.47 -0.09 13.82 16 18 O -0.50 -14.79 14.31 5.17 0.07 -14.71 16 19 N -0.35 -8.83 2.68 -59.56 -0.16 -8.99 16 20 C -0.39 -9.63 8.28 -14.88 -0.12 -9.76 16 21 H 0.11 2.40 6.90 -52.49 -0.36 2.04 16 22 C 0.08 2.05 4.35 -17.49 -0.08 1.97 16 23 N -0.80 -22.03 11.59 55.50 0.64 -21.39 16 24 Si 0.93 19.56 29.60 -169.99 -5.03 14.53 16 25 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 26 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 27 H -0.28 -5.63 7.11 56.52 0.40 -5.22 16 28 C 0.06 0.91 5.06 -3.84 -0.02 0.89 16 29 C -0.11 -1.38 5.75 -26.65 -0.15 -1.54 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.05 0.38 7.95 -51.93 -0.41 -0.03 16 34 H 0.04 0.37 8.09 -51.93 -0.42 -0.05 16 35 H 0.05 0.58 7.79 -51.93 -0.40 0.17 16 36 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 37 H 0.06 0.62 7.95 -51.92 -0.41 0.20 16 38 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 39 H 0.08 0.94 8.01 -51.93 -0.42 0.53 16 40 H 0.11 1.85 7.97 -51.93 -0.41 1.44 16 41 H 0.06 0.96 7.23 -51.93 -0.38 0.59 16 42 H 0.13 2.03 8.06 -52.49 -0.42 1.60 16 43 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 44 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 45 H 0.12 2.51 7.83 -52.49 -0.41 2.10 16 46 H 0.28 7.25 8.31 -40.82 -0.34 6.91 16 47 H 0.02 0.28 8.14 -51.93 -0.42 -0.15 16 48 H 0.10 1.73 5.88 -51.93 -0.31 1.43 16 49 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 50 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 398.89 15.07 6.01 6.01 Total: -1.00 -30.74 398.89 -11.53 -42.27 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -7.72 Total: 5.14 kcal Atomic # 6 Polarization: 6.59 SS G_CDS: -3.93 Total: 2.66 kcal Atomic # 7 Polarization: -50.30 SS G_CDS: -0.58 Total: -50.88 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: -0.28 Total: -19.72 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.03 Total: 14.53 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -30.74 -11.53 -42.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071821792.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.944 kcal (2) G-P(sol) polarization free energy of solvation -30.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds