Wall clock time and date at job start Tue Mar 31 2020 05:13:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.50547 * 2 1 4 4 C 1.53096 * 109.50555 * 239.91730 * 2 1 3 5 5 N 1.47011 * 109.25923 * 183.17401 * 4 2 1 6 6 C 1.46897 * 111.00124 * 182.39482 * 5 4 2 7 7 C 1.50698 * 109.47617 * 66.04316 * 6 5 4 8 8 N 1.29833 * 118.34458 * 359.97438 * 7 6 5 9 9 C 1.35628 * 121.61988 * 180.02562 * 8 7 6 10 10 C 1.39636 * 121.62039 * 179.97438 * 9 8 7 11 11 C 1.37714 * 119.69674 * 180.02562 * 10 9 8 12 12 C 1.38871 * 120.82145 * 0.04686 * 11 10 9 13 13 C 1.37787 * 120.57558 * 359.97438 * 12 11 10 14 14 C 1.39369 * 119.52143 * 359.97438 * 13 12 11 15 15 C 1.46959 * 121.91392 * 179.97438 * 14 13 12 16 16 O 1.21723 * 121.28439 * 359.75296 * 15 14 13 17 17 N 1.35344 * 117.42615 * 180.02562 * 15 14 13 18 18 C 1.37103 * 119.71196 * 179.97438 * 17 15 14 19 19 H 1.08005 * 119.99804 * 221.13266 * 18 17 15 20 20 C 1.39071 * 120.00602 * 41.13449 * 18 17 15 21 21 N 1.31266 * 119.99745 * 19.52549 * 20 18 17 22 22 Si 1.86802 * 120.00348 * 199.52705 * 20 18 17 23 23 H 1.48495 * 109.46905 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47264 * 119.99893 * 22 20 18 25 25 H 1.48500 * 109.46849 * 239.99898 * 22 20 18 26 26 C 1.47015 * 110.75541 * 58.61337 * 5 4 2 27 27 C 1.53105 * 109.25466 * 301.38696 * 26 5 4 28 28 C 1.53000 * 109.50620 * 296.91061 * 27 26 5 29 29 C 1.53004 * 109.50425 * 176.78393 * 27 26 5 30 30 O 1.43014 * 109.25915 * 56.85187 * 27 26 5 31 31 H 1.09003 * 109.46949 * 180.08531 * 1 2 3 32 32 H 1.09001 * 109.47425 * 300.08218 * 1 2 3 33 33 H 1.09003 * 109.47213 * 60.08342 * 1 2 3 34 34 H 1.09000 * 109.50717 * 63.23762 * 4 2 1 35 35 H 1.09002 * 109.54221 * 303.12598 * 4 2 1 36 36 H 1.09002 * 109.47181 * 306.03512 * 6 5 4 37 37 H 1.09011 * 109.47047 * 186.04616 * 6 5 4 38 38 H 1.07999 * 120.14954 * 0.02562 * 10 9 8 39 39 H 1.07992 * 119.58772 * 180.02562 * 11 10 9 40 40 H 1.08006 * 119.71180 * 179.97438 * 12 11 10 41 41 H 1.08002 * 120.24418 * 179.97438 * 13 12 11 42 42 H 0.97004 * 119.99857 * 180.02562 * 21 20 18 43 43 H 1.08995 * 109.50467 * 61.31925 * 26 5 4 44 44 H 1.08994 * 109.50726 * 181.45356 * 26 5 4 45 45 H 1.09004 * 109.46931 * 179.78819 * 28 27 26 46 46 H 1.09001 * 109.47402 * 299.78489 * 28 27 26 47 47 H 1.08997 * 109.47241 * 59.78852 * 28 27 26 48 48 H 1.09006 * 109.46965 * 300.22017 * 29 27 26 49 49 H 1.08997 * 109.47292 * 60.21508 * 29 27 26 50 50 H 1.09001 * 109.47177 * 180.21808 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0412 -0.7234 -1.2487 5 7 3.5093 -0.7870 -1.2053 6 6 4.0445 -1.4248 -2.4155 7 6 3.7587 -0.5533 -3.6112 8 7 3.1230 0.5630 -3.4225 9 6 2.8305 1.3974 -4.4509 10 6 2.1464 2.5976 -4.2480 11 6 1.8695 3.4150 -5.3212 12 6 2.2616 3.0605 -6.6054 13 6 2.9374 1.8812 -6.8314 14 6 3.2285 1.0400 -5.7590 15 6 3.9459 -0.2297 -5.9400 16 8 4.3108 -0.5981 -7.0412 17 7 4.1801 -0.9763 -4.8356 18 6 4.8451 -2.1697 -4.9506 19 1 4.5165 -3.0279 -4.3832 20 6 5.9429 -2.2752 -5.7979 21 7 6.5791 -1.1944 -6.1855 22 14 6.5122 -3.9550 -6.3843 23 1 5.6336 -5.0043 -5.8081 24 1 6.4443 -4.0110 -7.8667 25 1 7.9116 -4.1849 -5.9438 26 6 3.9649 -1.4869 0.0046 27 6 3.4343 -0.7558 1.2407 28 6 4.0230 0.6555 1.2914 29 6 3.8377 -1.5241 2.5009 30 8 2.0084 -0.6762 1.1659 31 1 -0.3633 -1.0277 0.0015 32 1 -0.3634 0.5151 0.8892 33 1 -0.3634 0.5125 -0.8907 34 1 1.7266 -0.1789 -2.1391 35 1 1.6338 -1.7340 -1.2771 36 1 3.5716 -2.3972 -2.5533 37 1 5.1216 -1.5563 -2.3109 38 1 1.8358 2.8836 -3.2540 39 1 1.3407 4.3431 -5.1622 40 1 2.0348 3.7148 -7.4342 41 1 3.2394 1.6105 -7.8324 42 1 7.3446 -1.2680 -6.7767 43 1 3.5882 -2.5097 -0.0030 44 1 5.0545 -1.4998 0.0291 45 1 3.6419 1.1768 2.1697 46 1 5.1097 0.5941 1.3485 47 1 3.7366 1.2012 0.3924 48 1 3.4194 -2.5300 2.4627 49 1 4.9245 -1.5845 2.5574 50 1 3.4564 -1.0052 3.3804 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071831060.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:57 Heat of formation + Delta-G solvation = -10.780899 kcal Electronic energy + Delta-G solvation = -33697.163518 eV Core-core repulsion = 29496.934581 eV Total energy + Delta-G solvation = -4200.228937 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 357.184 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.60239 -39.83516 -37.63517 -36.71174 -35.05222 -34.21120 -33.76767 -31.93221 -30.79921 -30.37840 -29.40032 -27.37204 -27.03879 -26.47187 -25.81883 -23.56874 -22.84993 -21.80585 -21.28743 -20.64132 -19.13125 -18.77545 -17.85656 -16.99626 -16.29996 -15.72580 -15.66031 -15.34938 -15.04587 -14.77352 -14.40042 -14.37259 -14.21553 -13.95057 -13.73157 -13.48788 -13.05890 -13.00371 -12.80492 -12.60115 -12.33969 -12.28398 -12.17124 -11.96858 -11.89924 -11.87282 -11.67882 -11.50424 -11.32311 -11.27653 -11.09435 -11.06835 -10.98854 -10.81322 -10.56846 -10.50023 -10.09346 -9.56876 -9.34700 -8.93588 -8.72702 -8.38144 -8.36275 -7.97666 -7.05813 -6.71479 -4.56083 1.48940 1.65666 3.01083 3.09848 3.13781 3.21123 3.65461 3.77712 3.88984 3.99076 4.43207 4.65609 4.82083 4.87946 5.03761 5.04664 5.12142 5.16274 5.34274 5.38340 5.44785 5.49520 5.53016 5.58306 5.59499 5.66701 5.68912 5.75776 5.78367 5.84023 5.89892 5.91648 5.97621 6.05225 6.09013 6.11102 6.16971 6.22806 6.28249 6.35956 6.49803 6.53345 6.69143 6.80108 7.01244 7.05635 7.12400 7.25093 7.31850 7.48648 7.49816 7.58502 8.09186 8.43813 8.69310 9.16299 9.48665 10.29794 Molecular weight = 357.18amu Principal moments of inertia in cm(-1) A = 0.008623 B = 0.004456 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3246.299797 B = 6282.646815 C = 8828.598213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.091 3.909 3 H 0.071 0.929 4 C 0.023 3.977 5 N -0.511 5.511 6 C 0.125 3.875 7 C 0.363 3.637 8 N -0.546 5.546 9 C 0.167 3.833 10 C -0.131 4.131 11 C -0.090 4.090 12 C -0.177 4.177 13 C -0.038 4.038 14 C -0.209 4.209 15 C 0.520 3.480 16 O -0.502 6.502 17 N -0.351 5.351 18 C -0.385 4.385 19 H 0.107 0.893 20 C 0.080 3.920 21 N -0.798 5.798 22 Si 0.927 3.073 23 H -0.263 1.263 24 H -0.273 1.273 25 H -0.277 1.277 26 C 0.030 3.970 27 C 0.119 3.881 28 C -0.168 4.168 29 C -0.136 4.136 30 O -0.381 6.381 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.115 0.885 35 H 0.026 0.974 36 H 0.056 0.944 37 H 0.106 0.894 38 H 0.124 0.876 39 H 0.116 0.884 40 H 0.115 0.885 41 H 0.122 0.878 42 H 0.280 0.720 43 H 0.038 0.962 44 H 0.083 0.917 45 H 0.052 0.948 46 H 0.061 0.939 47 H 0.078 0.922 48 H 0.060 0.940 49 H 0.070 0.930 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.330 2.273 11.866 13.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.034 3.966 3 H 0.089 0.911 4 C -0.105 4.105 5 N -0.235 5.235 6 C -0.004 4.004 7 C 0.100 3.900 8 N -0.274 5.274 9 C 0.051 3.949 10 C -0.151 4.151 11 C -0.110 4.110 12 C -0.196 4.196 13 C -0.058 4.058 14 C -0.217 4.217 15 C 0.314 3.686 16 O -0.376 6.376 17 N -0.054 5.054 18 C -0.512 4.512 19 H 0.124 0.876 20 C -0.138 4.138 21 N -0.425 5.425 22 Si 0.752 3.248 23 H -0.187 1.187 24 H -0.198 1.198 25 H -0.202 1.202 26 C -0.099 4.099 27 C 0.079 3.921 28 C -0.225 4.225 29 C -0.194 4.194 30 O -0.301 6.301 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.133 0.867 35 H 0.044 0.956 36 H 0.074 0.926 37 H 0.124 0.876 38 H 0.142 0.858 39 H 0.134 0.866 40 H 0.133 0.867 41 H 0.140 0.860 42 H 0.090 0.910 43 H 0.056 0.944 44 H 0.102 0.898 45 H 0.071 0.929 46 H 0.080 0.920 47 H 0.097 0.903 48 H 0.079 0.921 49 H 0.089 0.911 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.094 2.802 11.829 13.598 hybrid contribution 0.604 -1.574 -1.552 2.291 sum -5.490 1.228 10.277 11.716 Atomic orbital electron populations 1.21721 0.93450 1.02473 1.02290 1.22122 0.94040 0.96286 0.84176 0.91141 1.23024 0.87353 0.99342 1.00760 1.61855 1.09398 1.51802 1.00435 1.20750 1.01618 0.92814 0.85212 1.22635 0.91169 0.90299 0.85895 1.68432 1.24815 1.04156 1.29962 1.18847 0.94276 0.93745 0.88040 1.20575 1.01961 0.93728 0.98832 1.20967 0.98750 0.98631 0.92609 1.20826 1.03951 0.97946 0.96868 1.20878 0.94206 0.92547 0.98146 1.20840 1.07555 0.98012 0.95324 1.18198 0.81165 0.84703 0.84502 1.90667 1.50758 1.71992 1.24170 1.42262 1.40201 1.18359 1.04592 1.19606 1.12003 0.87371 1.32200 0.87567 1.25402 0.94256 0.99131 0.94973 1.69821 1.15837 1.29941 1.26912 0.85901 0.78386 0.81087 0.79472 1.18720 1.19826 1.20222 1.22779 1.00963 0.95643 0.90475 1.21447 0.81174 0.95370 0.94091 1.22272 1.00978 0.96499 1.02770 1.21736 1.01249 1.00232 0.96180 1.87950 1.20383 1.78382 1.43379 0.92332 0.92088 0.90912 0.86726 0.95579 0.92600 0.87564 0.85803 0.86563 0.86686 0.85982 0.90973 0.94412 0.89833 0.92903 0.92001 0.90326 0.92128 0.91119 0.91830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.57 37.16 0.36 -1.25 16 2 C 0.09 1.23 3.02 -26.68 -0.08 1.15 16 3 H 0.07 0.99 6.49 -51.93 -0.34 0.65 16 4 C 0.02 0.35 4.52 -3.71 -0.02 0.34 16 5 N -0.51 -8.02 3.75 -235.75 -0.89 -8.90 16 6 C 0.13 2.23 4.08 -4.98 -0.02 2.21 16 7 C 0.36 7.83 7.21 -154.88 -1.12 6.72 16 8 N -0.55 -11.31 7.07 -8.10 -0.06 -11.37 16 9 C 0.17 3.52 6.63 -84.50 -0.56 2.96 16 10 C -0.13 -2.29 10.03 -39.25 -0.39 -2.69 16 11 C -0.09 -1.40 10.00 -39.54 -0.40 -1.80 16 12 C -0.18 -2.95 10.02 -39.51 -0.40 -3.35 16 13 C -0.04 -0.78 9.68 -39.33 -0.38 -1.16 16 14 C -0.21 -4.86 5.89 -104.77 -0.62 -5.48 16 15 C 0.52 13.79 6.92 -12.47 -0.09 13.71 16 16 O -0.50 -14.65 14.29 5.17 0.07 -14.57 16 17 N -0.35 -8.74 2.68 -59.56 -0.16 -8.90 16 18 C -0.39 -9.57 8.24 -14.89 -0.12 -9.69 16 19 H 0.11 2.41 7.06 -52.48 -0.37 2.04 16 20 C 0.08 2.03 4.37 -17.48 -0.08 1.95 16 21 N -0.80 -21.89 11.55 55.50 0.64 -21.25 16 22 Si 0.93 19.50 29.60 -169.99 -5.03 14.47 16 23 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 24 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 25 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 26 C 0.03 0.40 4.34 -3.71 -0.02 0.38 16 27 C 0.12 1.47 1.11 -90.56 -0.10 1.36 16 28 C -0.17 -2.02 8.17 37.16 0.30 -1.72 16 29 C -0.14 -1.35 8.85 37.16 0.33 -1.03 16 30 O -0.38 -5.28 9.93 -35.23 -0.35 -5.63 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.11 1.95 5.62 -51.93 -0.29 1.66 16 35 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.06 0.96 7.56 -51.93 -0.39 0.57 16 37 H 0.11 1.90 7.95 -51.92 -0.41 1.49 16 38 H 0.12 1.91 8.06 -52.49 -0.42 1.49 16 39 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 40 H 0.12 1.57 8.06 -52.48 -0.42 1.15 16 41 H 0.12 2.49 7.83 -52.49 -0.41 2.08 16 42 H 0.28 7.22 8.31 -40.82 -0.34 6.88 16 43 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.08 1.04 8.09 -51.93 -0.42 0.62 16 45 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 46 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.08 1.10 6.13 -51.93 -0.32 0.79 16 48 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 49 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 50 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 393.48 15.07 5.93 5.93 Total: -1.00 -30.23 393.48 -10.81 -41.05 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -7.59 Total: 6.54 kcal Atomic # 6 Polarization: 6.01 SS G_CDS: -3.39 Total: 2.62 kcal Atomic # 7 Polarization: -49.96 SS G_CDS: -0.46 Total: -50.42 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: -0.28 Total: -20.20 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.03 Total: 14.47 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -30.23 -10.81 -41.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071831060.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.269 kcal (2) G-P(sol) polarization free energy of solvation -30.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds