Wall clock time and date at job start Tue Mar 31 2020 05:13:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.50547 * 2 1 4 4 C 1.53096 * 109.50555 * 239.91730 * 2 1 3 5 5 N 1.47011 * 109.25923 * 183.17401 * 4 2 1 6 6 C 1.46897 * 111.00124 * 182.39482 * 5 4 2 7 7 C 1.50698 * 109.47617 * 66.04316 * 6 5 4 8 8 N 1.29833 * 118.34458 * 359.97438 * 7 6 5 9 9 C 1.35628 * 121.61988 * 180.02562 * 8 7 6 10 10 C 1.39636 * 121.62039 * 179.97438 * 9 8 7 11 11 C 1.37714 * 119.69674 * 180.02562 * 10 9 8 12 12 C 1.38871 * 120.82145 * 0.04686 * 11 10 9 13 13 C 1.37787 * 120.57558 * 359.97438 * 12 11 10 14 14 C 1.39369 * 119.52143 * 359.97438 * 13 12 11 15 15 C 1.46959 * 121.91392 * 179.97438 * 14 13 12 16 16 O 1.21723 * 121.28439 * 359.75296 * 15 14 13 17 17 N 1.35344 * 117.42615 * 180.02562 * 15 14 13 18 18 C 1.37103 * 119.71196 * 179.97438 * 17 15 14 19 19 H 1.08005 * 119.99804 * 221.13266 * 18 17 15 20 20 C 1.39071 * 120.00602 * 41.13449 * 18 17 15 21 21 N 1.31266 * 119.99745 * 19.52549 * 20 18 17 22 22 Si 1.86802 * 120.00348 * 199.52705 * 20 18 17 23 23 H 1.48495 * 109.46905 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47264 * 119.99893 * 22 20 18 25 25 H 1.48500 * 109.46849 * 239.99898 * 22 20 18 26 26 C 1.47015 * 110.75541 * 58.61337 * 5 4 2 27 27 C 1.53105 * 109.25466 * 301.38696 * 26 5 4 28 28 C 1.53000 * 109.50620 * 296.91061 * 27 26 5 29 29 C 1.53004 * 109.50425 * 176.78393 * 27 26 5 30 30 O 1.43014 * 109.25915 * 56.85187 * 27 26 5 31 31 H 1.09003 * 109.46949 * 180.08531 * 1 2 3 32 32 H 1.09001 * 109.47425 * 300.08218 * 1 2 3 33 33 H 1.09003 * 109.47213 * 60.08342 * 1 2 3 34 34 H 1.09000 * 109.50717 * 63.23762 * 4 2 1 35 35 H 1.09002 * 109.54221 * 303.12598 * 4 2 1 36 36 H 1.09002 * 109.47181 * 306.03512 * 6 5 4 37 37 H 1.09011 * 109.47047 * 186.04616 * 6 5 4 38 38 H 1.07999 * 120.14954 * 0.02562 * 10 9 8 39 39 H 1.07992 * 119.58772 * 180.02562 * 11 10 9 40 40 H 1.08006 * 119.71180 * 179.97438 * 12 11 10 41 41 H 1.08002 * 120.24418 * 179.97438 * 13 12 11 42 42 H 0.97004 * 119.99857 * 180.02562 * 21 20 18 43 43 H 1.08995 * 109.50467 * 61.31925 * 26 5 4 44 44 H 1.08994 * 109.50726 * 181.45356 * 26 5 4 45 45 H 1.09004 * 109.46931 * 179.78819 * 28 27 26 46 46 H 1.09001 * 109.47402 * 299.78489 * 28 27 26 47 47 H 1.08997 * 109.47241 * 59.78852 * 28 27 26 48 48 H 1.09006 * 109.46965 * 300.22017 * 29 27 26 49 49 H 1.08997 * 109.47292 * 60.21508 * 29 27 26 50 50 H 1.09001 * 109.47177 * 180.21808 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0412 -0.7234 -1.2487 5 7 3.5093 -0.7870 -1.2053 6 6 4.0445 -1.4248 -2.4155 7 6 3.7587 -0.5533 -3.6112 8 7 3.1230 0.5630 -3.4225 9 6 2.8305 1.3974 -4.4509 10 6 2.1464 2.5976 -4.2480 11 6 1.8695 3.4150 -5.3212 12 6 2.2616 3.0605 -6.6054 13 6 2.9374 1.8812 -6.8314 14 6 3.2285 1.0400 -5.7590 15 6 3.9459 -0.2297 -5.9400 16 8 4.3108 -0.5981 -7.0412 17 7 4.1801 -0.9763 -4.8356 18 6 4.8451 -2.1697 -4.9506 19 1 4.5165 -3.0279 -4.3832 20 6 5.9429 -2.2752 -5.7979 21 7 6.5791 -1.1944 -6.1855 22 14 6.5122 -3.9550 -6.3843 23 1 5.6336 -5.0043 -5.8081 24 1 6.4443 -4.0110 -7.8667 25 1 7.9116 -4.1849 -5.9438 26 6 3.9649 -1.4869 0.0046 27 6 3.4343 -0.7558 1.2407 28 6 4.0230 0.6555 1.2914 29 6 3.8377 -1.5241 2.5009 30 8 2.0084 -0.6762 1.1659 31 1 -0.3633 -1.0277 0.0015 32 1 -0.3634 0.5151 0.8892 33 1 -0.3634 0.5125 -0.8907 34 1 1.7266 -0.1789 -2.1391 35 1 1.6338 -1.7340 -1.2771 36 1 3.5716 -2.3972 -2.5533 37 1 5.1216 -1.5563 -2.3109 38 1 1.8358 2.8836 -3.2540 39 1 1.3407 4.3431 -5.1622 40 1 2.0348 3.7148 -7.4342 41 1 3.2394 1.6105 -7.8324 42 1 7.3446 -1.2680 -6.7767 43 1 3.5882 -2.5097 -0.0030 44 1 5.0545 -1.4998 0.0291 45 1 3.6419 1.1768 2.1697 46 1 5.1097 0.5941 1.3485 47 1 3.7366 1.2012 0.3924 48 1 3.4194 -2.5300 2.4627 49 1 4.9245 -1.5845 2.5574 50 1 3.4564 -1.0052 3.3804 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071831060.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:56 Heat of formation + Delta-G solvation = -28.004318 kcal Electronic energy + Delta-G solvation = -33697.910381 eV Core-core repulsion = 29496.934581 eV Total energy + Delta-G solvation = -4200.975800 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 357.184 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.27050 -40.99111 -39.22123 -38.39281 -36.45686 -35.54068 -35.16070 -33.73147 -32.02989 -31.84413 -30.83193 -28.52525 -28.17439 -27.64648 -27.53868 -25.03954 -24.41964 -23.01092 -22.57579 -22.21540 -20.53495 -20.18959 -19.52110 -18.60131 -17.53515 -17.36037 -16.85718 -16.83301 -16.52908 -16.10040 -15.98903 -15.68622 -15.55867 -15.41783 -15.25868 -14.77225 -14.56482 -14.35278 -14.04316 -13.91532 -13.83077 -13.65336 -13.48849 -13.15838 -13.03905 -13.01663 -12.80885 -12.75707 -12.70885 -12.62077 -12.58726 -12.42739 -12.28320 -12.14117 -11.95887 -11.78936 -11.34348 -11.13266 -10.81968 -10.56043 -10.27580 -10.20351 -9.90664 -9.23320 -8.79135 -8.53538 -6.49613 -0.09875 0.09450 1.31649 1.38784 1.49496 1.53023 1.98931 2.25486 2.39549 2.78848 2.86742 3.00071 3.24936 3.38872 3.79958 3.83261 3.92958 3.99998 4.09136 4.12362 4.20133 4.25824 4.29349 4.36886 4.48899 4.50706 4.53739 4.59845 4.65880 4.72258 4.75334 4.79498 4.85572 4.92269 5.00093 5.03891 5.09379 5.13835 5.14121 5.20045 5.25163 5.31729 5.36239 5.37399 5.54364 5.56450 5.57646 5.77395 5.93840 6.03564 6.12292 6.30854 6.44098 6.60871 6.84261 7.40560 7.62823 8.44615 Molecular weight = 357.18amu Principal moments of inertia in cm(-1) A = 0.008623 B = 0.004456 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3246.299797 B = 6282.646815 C = 8828.598213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.096 3.904 3 H 0.066 0.934 4 C 0.028 3.972 5 N -0.515 5.515 6 C 0.134 3.866 7 C 0.353 3.647 8 N -0.527 5.527 9 C 0.137 3.863 10 C -0.124 4.124 11 C -0.072 4.072 12 C -0.150 4.150 13 C -0.068 4.068 14 C -0.238 4.238 15 C 0.495 3.505 16 O -0.554 6.554 17 N -0.369 5.369 18 C -0.402 4.402 19 H 0.121 0.879 20 C 0.033 3.967 21 N -0.848 5.848 22 Si 0.991 3.009 23 H -0.244 1.244 24 H -0.290 1.290 25 H -0.262 1.262 26 C 0.029 3.971 27 C 0.115 3.885 28 C -0.162 4.162 29 C -0.132 4.132 30 O -0.388 6.388 31 H 0.056 0.944 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.096 0.904 35 H 0.020 0.980 36 H 0.060 0.940 37 H 0.103 0.897 38 H 0.151 0.849 39 H 0.171 0.829 40 H 0.156 0.844 41 H 0.108 0.892 42 H 0.276 0.724 43 H 0.039 0.961 44 H 0.092 0.908 45 H 0.063 0.937 46 H 0.069 0.931 47 H 0.056 0.944 48 H 0.060 0.940 49 H 0.087 0.913 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.068 3.850 14.251 16.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.038 3.962 3 H 0.084 0.916 4 C -0.100 4.100 5 N -0.239 5.239 6 C 0.005 3.995 7 C 0.089 3.911 8 N -0.253 5.253 9 C 0.023 3.977 10 C -0.143 4.143 11 C -0.091 4.091 12 C -0.169 4.169 13 C -0.088 4.088 14 C -0.245 4.245 15 C 0.291 3.709 16 O -0.432 6.432 17 N -0.074 5.074 18 C -0.528 4.528 19 H 0.138 0.862 20 C -0.179 4.179 21 N -0.478 5.478 22 Si 0.813 3.187 23 H -0.167 1.167 24 H -0.216 1.216 25 H -0.187 1.187 26 C -0.099 4.099 27 C 0.076 3.924 28 C -0.219 4.219 29 C -0.189 4.189 30 O -0.308 6.308 31 H 0.076 0.924 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.114 0.886 35 H 0.039 0.961 36 H 0.078 0.922 37 H 0.121 0.879 38 H 0.169 0.831 39 H 0.189 0.811 40 H 0.174 0.826 41 H 0.126 0.874 42 H 0.085 0.915 43 H 0.057 0.943 44 H 0.111 0.889 45 H 0.082 0.918 46 H 0.088 0.912 47 H 0.075 0.925 48 H 0.079 0.921 49 H 0.106 0.894 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.873 4.409 14.291 16.901 hybrid contribution 0.954 -1.784 -2.223 3.005 sum -6.919 2.625 12.068 14.156 Atomic orbital electron populations 1.21712 0.91754 1.02734 1.03279 1.22103 0.95325 0.95543 0.83215 0.91634 1.22953 0.87048 0.98968 1.01057 1.61857 1.09723 1.52039 1.00308 1.20671 1.01490 0.92368 0.84985 1.23326 0.90453 0.91207 0.86105 1.68532 1.23308 1.03668 1.29831 1.19329 0.95711 0.95457 0.87233 1.20997 1.00238 0.92065 1.01002 1.21567 0.96818 0.99661 0.91050 1.21337 1.00472 0.96060 0.98990 1.21001 0.96431 0.94304 0.97054 1.20990 1.08589 0.97588 0.97341 1.18874 0.81427 0.86156 0.84445 1.90591 1.53342 1.73500 1.25756 1.42354 1.40985 1.18747 1.05281 1.19980 1.11956 0.88139 1.32741 0.86204 1.26378 0.94284 1.02421 0.94825 1.69936 1.16917 1.32295 1.28672 0.84954 0.78886 0.77237 0.77670 1.16707 1.21634 1.18671 1.22899 1.01598 0.95655 0.89777 1.21637 0.80505 0.95751 0.94543 1.22210 1.01527 0.96103 1.02102 1.21737 1.02391 0.99844 0.94961 1.87956 1.21290 1.78382 1.43219 0.92447 0.90798 0.90203 0.88619 0.96136 0.92197 0.87936 0.83098 0.81118 0.82614 0.87393 0.91478 0.94320 0.88939 0.91841 0.91174 0.92530 0.92102 0.89446 0.91076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 9.57 71.98 0.69 -2.15 16 2 C 0.10 2.45 3.02 30.63 0.09 2.54 16 3 H 0.07 1.75 6.49 -2.39 -0.02 1.73 16 4 C 0.03 0.84 4.52 86.31 0.39 1.23 16 5 N -0.52 -16.00 3.75 -899.78 -3.38 -19.38 16 6 C 0.13 4.89 4.08 85.56 0.35 5.24 16 7 C 0.35 15.76 7.21 137.94 0.99 16.76 16 8 N -0.53 -22.08 7.07 -179.54 -1.27 -23.35 16 9 C 0.14 5.77 6.63 39.65 0.26 6.03 16 10 C -0.12 -3.94 10.03 22.48 0.23 -3.71 16 11 C -0.07 -1.88 10.00 22.30 0.22 -1.66 16 12 C -0.15 -4.52 10.02 22.31 0.22 -4.29 16 13 C -0.07 -2.82 9.68 22.44 0.22 -2.60 16 14 C -0.24 -11.44 5.89 -19.96 -0.12 -11.56 16 15 C 0.49 27.98 6.92 86.44 0.60 28.57 16 16 O -0.55 -34.84 14.29 -4.42 -0.06 -34.91 16 17 N -0.37 -19.39 2.68 -460.25 -1.23 -20.63 16 18 C -0.40 -20.96 8.24 84.07 0.69 -20.27 16 19 H 0.12 5.63 7.06 -2.91 -0.02 5.61 16 20 C 0.03 1.74 4.37 84.98 0.37 2.11 16 21 N -0.85 -49.66 11.55 21.68 0.25 -49.41 16 22 Si 0.99 41.65 29.60 68.60 2.03 43.68 16 23 H -0.24 -9.35 7.11 99.48 0.71 -8.64 16 24 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 25 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 26 C 0.03 0.73 4.34 86.32 0.37 1.10 16 27 C 0.11 2.62 1.11 -10.76 -0.01 2.61 16 28 C -0.16 -3.61 8.17 71.98 0.59 -3.02 16 29 C -0.13 -2.28 8.85 71.98 0.64 -1.64 16 30 O -0.39 -10.04 9.93 -148.98 -1.48 -11.52 16 31 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.10 3.23 5.62 -2.39 -0.01 3.22 16 35 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.06 2.12 7.56 -2.39 -0.02 2.10 16 37 H 0.10 3.79 7.95 -2.38 -0.02 3.77 16 38 H 0.15 4.00 8.06 -2.91 -0.02 3.98 16 39 H 0.17 2.80 8.06 -2.91 -0.02 2.77 16 40 H 0.16 3.46 8.06 -2.91 -0.02 3.44 16 41 H 0.11 4.66 7.83 -2.91 -0.02 4.64 16 42 H 0.28 15.27 8.31 -92.71 -0.77 14.50 16 43 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.09 2.18 8.09 -2.39 -0.02 2.16 16 45 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 46 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 47 H 0.06 1.51 6.13 -2.39 -0.01 1.50 16 48 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 49 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 50 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -72.15 393.48 2.60 -69.55 By element: Atomic # 1 Polarization: 29.72 SS G_CDS: 0.94 Total: 30.67 kcal Atomic # 6 Polarization: 8.49 SS G_CDS: 6.80 Total: 15.29 kcal Atomic # 7 Polarization: -107.13 SS G_CDS: -5.63 Total: -112.76 kcal Atomic # 8 Polarization: -44.88 SS G_CDS: -1.54 Total: -46.42 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.68 kcal Total: -72.15 2.60 -69.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071831060.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.548 kcal (2) G-P(sol) polarization free energy of solvation -72.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds