Wall clock time and date at job start Tue Mar 31 2020 05:14:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.50233 * 2 1 4 4 C 1.53093 * 109.50649 * 120.08738 * 2 1 3 5 5 N 1.47015 * 109.25590 * 176.78548 * 4 2 1 6 6 C 1.46898 * 110.99915 * 177.61027 * 5 4 2 7 7 C 1.50703 * 109.47219 * 293.76853 * 6 5 4 8 8 N 1.29830 * 118.34712 * 354.62333 * 7 6 5 9 9 C 1.35633 * 121.62249 * 180.02562 * 8 7 6 10 10 C 1.39626 * 121.61914 * 180.02562 * 9 8 7 11 11 C 1.37716 * 119.69562 * 179.97438 * 10 9 8 12 12 C 1.38870 * 120.82117 * 0.02562 * 11 10 9 13 13 C 1.37785 * 120.57528 * 359.95306 * 12 11 10 14 14 C 1.39375 * 119.51997 * 0.04380 * 13 12 11 15 15 C 1.46962 * 121.90937 * 180.25812 * 14 13 12 16 16 O 1.21724 * 121.29161 * 359.97438 * 15 14 13 17 17 N 1.35338 * 117.42151 * 180.22151 * 15 14 13 18 18 C 1.37104 * 119.71859 * 179.76475 * 17 15 14 19 19 H 1.08003 * 120.00128 * 136.94237 * 18 17 15 20 20 C 1.39079 * 120.00016 * 316.94988 * 18 17 15 21 21 N 1.31257 * 119.99890 * 344.74756 * 20 18 17 22 22 Si 1.86799 * 120.00143 * 164.47470 * 20 18 17 23 23 H 1.48497 * 109.47329 * 89.99536 * 22 20 18 24 24 H 1.48494 * 109.47025 * 210.00115 * 22 20 18 25 25 H 1.48507 * 109.46955 * 329.99829 * 22 20 18 26 26 C 1.47021 * 110.75204 * 301.38375 * 5 4 2 27 27 C 1.53098 * 109.25357 * 58.62236 * 26 5 4 28 28 C 1.53000 * 109.50140 * 183.21472 * 27 26 5 29 29 C 1.52991 * 109.51227 * 63.08509 * 27 26 5 30 30 O 1.43016 * 109.25729 * 303.14242 * 27 26 5 31 31 H 1.08996 * 109.47416 * 299.91078 * 1 2 3 32 32 H 1.08997 * 109.47200 * 59.91416 * 1 2 3 33 33 H 1.08996 * 109.46694 * 179.90802 * 1 2 3 34 34 H 1.09005 * 109.50443 * 56.85366 * 4 2 1 35 35 H 1.09000 * 109.50813 * 296.72427 * 4 2 1 36 36 H 1.08998 * 109.47615 * 173.76564 * 6 5 4 37 37 H 1.09002 * 109.47475 * 53.76861 * 6 5 4 38 38 H 1.08002 * 120.15375 * 359.94684 * 10 9 8 39 39 H 1.07998 * 119.58946 * 179.97438 * 11 10 9 40 40 H 1.08001 * 119.71135 * 179.97438 * 12 11 10 41 41 H 1.08002 * 120.24388 * 180.02562 * 13 12 11 42 42 H 0.96993 * 120.00080 * 180.02562 * 21 20 18 43 43 H 1.09004 * 109.50099 * 178.54981 * 26 5 4 44 44 H 1.08996 * 109.51060 * 298.68175 * 26 5 4 45 45 H 1.09004 * 109.46861 * 179.78041 * 28 27 26 46 46 H 1.08995 * 109.47034 * 299.77914 * 28 27 26 47 47 H 1.09004 * 109.47397 * 59.78195 * 28 27 26 48 48 H 1.09002 * 109.46919 * 300.21682 * 29 27 26 49 49 H 1.08996 * 109.47305 * 60.21322 * 29 27 26 50 50 H 1.08995 * 109.47594 * 180.21989 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0412 -0.7234 1.2486 5 7 3.5093 -0.7879 1.2047 6 6 4.0447 -1.4259 2.4147 7 6 3.7637 -0.5518 3.6098 8 7 3.2275 0.6133 3.4088 9 6 2.9470 1.4537 4.4358 10 6 2.3697 2.7066 4.2197 11 6 2.1011 3.5281 5.2918 12 6 2.3977 3.1266 6.5877 13 6 2.9671 1.8950 6.8268 14 6 3.2470 1.0482 5.7558 15 6 3.8485 -0.2785 5.9510 16 8 4.1267 -0.6892 7.0625 17 7 4.0859 -1.0238 4.8465 18 6 4.6502 -2.2668 4.9738 19 1 4.2683 -3.0950 4.3953 20 6 5.7143 -2.4612 5.8479 21 7 6.3719 -1.4286 6.3212 22 14 6.2028 -4.1916 6.3545 23 1 7.2121 -4.7199 5.4020 24 1 6.7803 -4.1625 7.7222 25 1 5.0040 -5.0680 6.3419 26 6 3.9640 -1.4883 -0.0054 27 6 3.4335 -0.7570 -1.2414 28 6 3.8359 -1.5258 -2.5016 29 6 4.0229 0.6539 -1.2925 30 8 2.0076 -0.6766 -1.1660 31 1 -0.3634 0.5124 0.8907 32 1 -0.3633 0.5151 -0.8892 33 1 -0.3632 -1.0277 -0.0016 34 1 1.6332 -1.7339 1.2765 35 1 1.7273 -0.1787 2.1390 36 1 5.1210 -1.5611 2.3084 37 1 3.5688 -2.3966 2.5547 38 1 2.1354 3.0302 3.2162 39 1 1.6550 4.4970 5.1226 40 1 2.1799 3.7855 7.4153 41 1 3.1952 1.5880 7.8369 42 1 7.1143 -1.5642 6.9306 43 1 5.0537 -1.5018 -0.0302 44 1 3.5867 -2.5109 0.0025 45 1 3.4546 -1.0067 -3.3810 46 1 4.9226 -1.5868 -2.5584 47 1 3.4170 -2.5314 -2.4631 48 1 3.7372 1.1998 -0.3934 49 1 5.1096 0.5918 -1.3500 50 1 3.6418 1.1753 -2.1706 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071831061.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:00 Heat of formation + Delta-G solvation = -11.197757 kcal Electronic energy + Delta-G solvation = -33690.480163 eV Core-core repulsion = 29490.233150 eV Total energy + Delta-G solvation = -4200.247013 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 357.184 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.58915 -39.84465 -37.62769 -36.69184 -35.05693 -34.22087 -33.75809 -31.90342 -30.81113 -30.37063 -29.39810 -27.37541 -27.03486 -26.49598 -25.80139 -23.56502 -22.84630 -21.81059 -21.30092 -20.62120 -19.14276 -18.76313 -17.84795 -16.98740 -16.30903 -15.73218 -15.67226 -15.34967 -15.03585 -14.77666 -14.39672 -14.37355 -14.21804 -13.93542 -13.72534 -13.48786 -13.06356 -12.98867 -12.81894 -12.61158 -12.33693 -12.28836 -12.18065 -11.97411 -11.87892 -11.86088 -11.68246 -11.48047 -11.31884 -11.27998 -11.08182 -11.06436 -10.99253 -10.82781 -10.60576 -10.50680 -10.09821 -9.54704 -9.34876 -8.90160 -8.75730 -8.38210 -8.36316 -7.98457 -7.03383 -6.67829 -4.57001 1.49335 1.66402 3.00754 3.09738 3.13229 3.22218 3.65890 3.76819 3.89701 3.99141 4.43704 4.67543 4.81736 4.88022 5.03071 5.03773 5.12366 5.14805 5.34166 5.37051 5.44755 5.49156 5.52030 5.58422 5.58695 5.66210 5.68203 5.75441 5.77646 5.83908 5.89448 5.91495 5.96704 6.04456 6.09114 6.10151 6.17069 6.21850 6.26892 6.32494 6.48004 6.52651 6.68396 6.80752 7.01664 7.06520 7.12534 7.23529 7.29955 7.47238 7.49672 7.61343 8.11321 8.45224 8.71191 9.17597 9.51230 10.33410 Molecular weight = 357.18amu Principal moments of inertia in cm(-1) A = 0.008562 B = 0.004463 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3269.395409 B = 6271.800401 C = 8799.498715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.092 3.908 3 H 0.071 0.929 4 C 0.027 3.973 5 N -0.510 5.510 6 C 0.125 3.875 7 C 0.365 3.635 8 N -0.544 5.544 9 C 0.167 3.833 10 C -0.131 4.131 11 C -0.090 4.090 12 C -0.176 4.176 13 C -0.039 4.039 14 C -0.208 4.208 15 C 0.520 3.480 16 O -0.499 6.499 17 N -0.353 5.353 18 C -0.384 4.384 19 H 0.105 0.895 20 C 0.077 3.923 21 N -0.801 5.801 22 Si 0.929 3.071 23 H -0.272 1.272 24 H -0.277 1.277 25 H -0.264 1.264 26 C 0.030 3.970 27 C 0.119 3.881 28 C -0.136 4.136 29 C -0.168 4.168 30 O -0.380 6.380 31 H 0.072 0.928 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.028 0.972 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.058 0.942 38 H 0.124 0.876 39 H 0.116 0.884 40 H 0.115 0.885 41 H 0.122 0.878 42 H 0.280 0.720 43 H 0.084 0.916 44 H 0.038 0.962 45 H 0.063 0.937 46 H 0.070 0.930 47 H 0.060 0.940 48 H 0.078 0.922 49 H 0.061 0.939 50 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.791 2.751 -12.242 13.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.034 3.966 3 H 0.089 0.911 4 C -0.101 4.101 5 N -0.234 5.234 6 C -0.004 4.004 7 C 0.102 3.898 8 N -0.272 5.272 9 C 0.051 3.949 10 C -0.150 4.150 11 C -0.110 4.110 12 C -0.195 4.195 13 C -0.058 4.058 14 C -0.216 4.216 15 C 0.314 3.686 16 O -0.373 6.373 17 N -0.057 5.057 18 C -0.511 4.511 19 H 0.122 0.878 20 C -0.140 4.140 21 N -0.429 5.429 22 Si 0.753 3.247 23 H -0.198 1.198 24 H -0.202 1.202 25 H -0.188 1.188 26 C -0.098 4.098 27 C 0.079 3.921 28 C -0.194 4.194 29 C -0.225 4.225 30 O -0.300 6.300 31 H 0.091 0.909 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.046 0.954 35 H 0.125 0.875 36 H 0.123 0.877 37 H 0.076 0.924 38 H 0.142 0.858 39 H 0.134 0.866 40 H 0.133 0.867 41 H 0.140 0.860 42 H 0.090 0.910 43 H 0.102 0.898 44 H 0.056 0.944 45 H 0.082 0.918 46 H 0.089 0.911 47 H 0.079 0.921 48 H 0.097 0.903 49 H 0.080 0.920 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.559 3.271 -12.179 13.782 hybrid contribution 0.509 -1.646 1.550 2.317 sum -5.051 1.625 -10.629 11.880 Atomic orbital electron populations 1.21724 0.93435 1.02500 1.02309 1.22116 0.94053 0.96290 0.84148 0.91079 1.22925 0.87482 0.99307 1.00433 1.61857 1.09242 1.51840 1.00494 1.20750 1.01592 0.92883 0.85158 1.22673 0.91149 0.89985 0.85976 1.68472 1.25594 1.02795 1.30350 1.18852 0.94315 0.93772 0.87972 1.20580 1.02702 0.92946 0.98821 1.20970 0.98748 0.98721 0.92562 1.20830 1.04948 0.97066 0.96684 1.20884 0.94126 0.92573 0.98252 1.20881 1.08780 0.96890 0.95085 1.18220 0.80550 0.85063 0.84743 1.90666 1.50463 1.72747 1.23393 1.42236 1.43428 1.15900 1.04115 1.19548 1.15928 0.85006 1.30636 0.87752 1.25430 0.94128 0.99516 0.94944 1.69795 1.16147 1.31632 1.25339 0.85927 0.79062 0.81147 0.78528 1.19791 1.20195 1.18838 1.22782 1.00984 0.95646 0.90430 1.21450 0.81156 0.95394 0.94099 1.21736 1.01257 1.00234 0.96174 1.22270 1.00972 0.96484 1.02794 1.87954 1.20422 1.78357 1.43307 0.90938 0.92043 0.92304 0.95420 0.87479 0.87656 0.92447 0.85789 0.86562 0.86682 0.85969 0.90992 0.89808 0.94380 0.91825 0.91113 0.92120 0.90280 0.92000 0.92908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.57 37.16 0.36 -1.25 16 2 C 0.09 1.23 3.02 -26.68 -0.08 1.15 16 3 H 0.07 0.99 6.50 -51.93 -0.34 0.65 16 4 C 0.03 0.40 4.53 -3.71 -0.02 0.39 16 5 N -0.51 -7.96 3.71 -235.74 -0.87 -8.83 16 6 C 0.13 2.23 4.18 -4.98 -0.02 2.21 16 7 C 0.37 7.89 7.09 -154.87 -1.10 6.79 16 8 N -0.54 -11.32 7.39 -8.10 -0.06 -11.38 16 9 C 0.17 3.53 6.63 -84.50 -0.56 2.97 16 10 C -0.13 -2.30 10.03 -39.25 -0.39 -2.69 16 11 C -0.09 -1.41 10.00 -39.54 -0.40 -1.81 16 12 C -0.18 -2.95 10.02 -39.51 -0.40 -3.34 16 13 C -0.04 -0.80 9.68 -39.32 -0.38 -1.18 16 14 C -0.21 -4.85 5.89 -104.77 -0.62 -5.47 16 15 C 0.52 13.83 6.90 -12.47 -0.09 13.75 16 16 O -0.50 -14.61 14.29 5.17 0.07 -14.54 16 17 N -0.35 -8.81 2.67 -59.56 -0.16 -8.97 16 18 C -0.38 -9.58 8.25 -14.88 -0.12 -9.70 16 19 H 0.10 2.37 6.95 -52.48 -0.36 2.00 16 20 C 0.08 1.95 4.51 -17.49 -0.08 1.87 16 21 N -0.80 -22.08 11.39 55.50 0.63 -21.45 16 22 Si 0.93 19.51 29.58 -169.99 -5.03 14.48 16 23 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 24 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 25 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 26 C 0.03 0.40 4.34 -3.71 -0.02 0.38 16 27 C 0.12 1.45 1.11 -90.57 -0.10 1.35 16 28 C -0.14 -1.34 8.85 37.16 0.33 -1.01 16 29 C -0.17 -2.00 8.17 37.15 0.30 -1.70 16 30 O -0.38 -5.24 9.93 -35.23 -0.35 -5.59 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.11 1.82 5.86 -51.93 -0.30 1.52 16 36 H 0.11 1.87 8.04 -51.93 -0.42 1.46 16 37 H 0.06 0.99 7.30 -51.93 -0.38 0.61 16 38 H 0.12 1.93 8.06 -52.49 -0.42 1.50 16 39 H 0.12 1.41 8.06 -52.49 -0.42 0.98 16 40 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 41 H 0.12 2.50 7.83 -52.49 -0.41 2.08 16 42 H 0.28 7.26 8.30 -40.82 -0.34 6.92 16 43 H 0.08 1.03 8.09 -51.93 -0.42 0.61 16 44 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 46 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.08 1.10 6.13 -51.93 -0.32 0.78 16 49 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 50 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 393.65 15.07 5.93 5.93 Total: -1.00 -30.35 393.65 -10.79 -41.15 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: -7.58 Total: 6.48 kcal Atomic # 6 Polarization: 6.09 SS G_CDS: -3.38 Total: 2.71 kcal Atomic # 7 Polarization: -50.17 SS G_CDS: -0.46 Total: -50.63 kcal Atomic # 8 Polarization: -19.85 SS G_CDS: -0.28 Total: -20.12 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.03 Total: 14.48 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -30.35 -10.79 -41.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071831061.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.948 kcal (2) G-P(sol) polarization free energy of solvation -30.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds