Wall clock time and date at job start Tue Mar 31 2020 05:13:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.50233 * 2 1 4 4 C 1.53093 * 109.50649 * 120.08738 * 2 1 3 5 5 N 1.47015 * 109.25590 * 176.78548 * 4 2 1 6 6 C 1.46898 * 110.99915 * 177.61027 * 5 4 2 7 7 C 1.50703 * 109.47219 * 293.76853 * 6 5 4 8 8 N 1.29830 * 118.34712 * 354.62333 * 7 6 5 9 9 C 1.35633 * 121.62249 * 180.02562 * 8 7 6 10 10 C 1.39626 * 121.61914 * 180.02562 * 9 8 7 11 11 C 1.37716 * 119.69562 * 179.97438 * 10 9 8 12 12 C 1.38870 * 120.82117 * 0.02562 * 11 10 9 13 13 C 1.37785 * 120.57528 * 359.95306 * 12 11 10 14 14 C 1.39375 * 119.51997 * 0.04380 * 13 12 11 15 15 C 1.46962 * 121.90937 * 180.25812 * 14 13 12 16 16 O 1.21724 * 121.29161 * 359.97438 * 15 14 13 17 17 N 1.35338 * 117.42151 * 180.22151 * 15 14 13 18 18 C 1.37104 * 119.71859 * 179.76475 * 17 15 14 19 19 H 1.08003 * 120.00128 * 136.94237 * 18 17 15 20 20 C 1.39079 * 120.00016 * 316.94988 * 18 17 15 21 21 N 1.31257 * 119.99890 * 344.74756 * 20 18 17 22 22 Si 1.86799 * 120.00143 * 164.47470 * 20 18 17 23 23 H 1.48497 * 109.47329 * 89.99536 * 22 20 18 24 24 H 1.48494 * 109.47025 * 210.00115 * 22 20 18 25 25 H 1.48507 * 109.46955 * 329.99829 * 22 20 18 26 26 C 1.47021 * 110.75204 * 301.38375 * 5 4 2 27 27 C 1.53098 * 109.25357 * 58.62236 * 26 5 4 28 28 C 1.53000 * 109.50140 * 183.21472 * 27 26 5 29 29 C 1.52991 * 109.51227 * 63.08509 * 27 26 5 30 30 O 1.43016 * 109.25729 * 303.14242 * 27 26 5 31 31 H 1.08996 * 109.47416 * 299.91078 * 1 2 3 32 32 H 1.08997 * 109.47200 * 59.91416 * 1 2 3 33 33 H 1.08996 * 109.46694 * 179.90802 * 1 2 3 34 34 H 1.09005 * 109.50443 * 56.85366 * 4 2 1 35 35 H 1.09000 * 109.50813 * 296.72427 * 4 2 1 36 36 H 1.08998 * 109.47615 * 173.76564 * 6 5 4 37 37 H 1.09002 * 109.47475 * 53.76861 * 6 5 4 38 38 H 1.08002 * 120.15375 * 359.94684 * 10 9 8 39 39 H 1.07998 * 119.58946 * 179.97438 * 11 10 9 40 40 H 1.08001 * 119.71135 * 179.97438 * 12 11 10 41 41 H 1.08002 * 120.24388 * 180.02562 * 13 12 11 42 42 H 0.96993 * 120.00080 * 180.02562 * 21 20 18 43 43 H 1.09004 * 109.50099 * 178.54981 * 26 5 4 44 44 H 1.08996 * 109.51060 * 298.68175 * 26 5 4 45 45 H 1.09004 * 109.46861 * 179.78041 * 28 27 26 46 46 H 1.08995 * 109.47034 * 299.77914 * 28 27 26 47 47 H 1.09004 * 109.47397 * 59.78195 * 28 27 26 48 48 H 1.09002 * 109.46919 * 300.21682 * 29 27 26 49 49 H 1.08996 * 109.47305 * 60.21322 * 29 27 26 50 50 H 1.08995 * 109.47594 * 180.21989 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0412 -0.7234 1.2486 5 7 3.5093 -0.7879 1.2047 6 6 4.0447 -1.4259 2.4147 7 6 3.7637 -0.5518 3.6098 8 7 3.2275 0.6133 3.4088 9 6 2.9470 1.4537 4.4358 10 6 2.3697 2.7066 4.2197 11 6 2.1011 3.5281 5.2918 12 6 2.3977 3.1266 6.5877 13 6 2.9671 1.8950 6.8268 14 6 3.2470 1.0482 5.7558 15 6 3.8485 -0.2785 5.9510 16 8 4.1267 -0.6892 7.0625 17 7 4.0859 -1.0238 4.8465 18 6 4.6502 -2.2668 4.9738 19 1 4.2683 -3.0950 4.3953 20 6 5.7143 -2.4612 5.8479 21 7 6.3719 -1.4286 6.3212 22 14 6.2028 -4.1916 6.3545 23 1 7.2121 -4.7199 5.4020 24 1 6.7803 -4.1625 7.7222 25 1 5.0040 -5.0680 6.3419 26 6 3.9640 -1.4883 -0.0054 27 6 3.4335 -0.7570 -1.2414 28 6 3.8359 -1.5258 -2.5016 29 6 4.0229 0.6539 -1.2925 30 8 2.0076 -0.6766 -1.1660 31 1 -0.3634 0.5124 0.8907 32 1 -0.3633 0.5151 -0.8892 33 1 -0.3632 -1.0277 -0.0016 34 1 1.6332 -1.7339 1.2765 35 1 1.7273 -0.1787 2.1390 36 1 5.1210 -1.5611 2.3084 37 1 3.5688 -2.3966 2.5547 38 1 2.1354 3.0302 3.2162 39 1 1.6550 4.4970 5.1226 40 1 2.1799 3.7855 7.4153 41 1 3.1952 1.5880 7.8369 42 1 7.1143 -1.5642 6.9306 43 1 5.0537 -1.5018 -0.0302 44 1 3.5867 -2.5109 0.0025 45 1 3.4546 -1.0067 -3.3810 46 1 4.9226 -1.5868 -2.5584 47 1 3.4170 -2.5314 -2.4631 48 1 3.7372 1.1998 -0.3934 49 1 5.1096 0.5918 -1.3500 50 1 3.6418 1.1753 -2.1706 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071831061.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:59 Heat of formation + Delta-G solvation = -28.574328 kcal Electronic energy + Delta-G solvation = -33691.233668 eV Core-core repulsion = 29490.233150 eV Total energy + Delta-G solvation = -4201.000518 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 357.184 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.25807 -40.99738 -39.21624 -38.37716 -36.45824 -35.53233 -35.17162 -33.71052 -32.03509 -31.84406 -30.83120 -28.52135 -28.16867 -27.63549 -27.55839 -25.03217 -24.42242 -23.00763 -22.59790 -22.19605 -20.52454 -20.19886 -19.51497 -18.59483 -17.53893 -17.36753 -16.87339 -16.82065 -16.51484 -16.09520 -15.99411 -15.68872 -15.54692 -15.42099 -15.25532 -14.76830 -14.55425 -14.35432 -14.05726 -13.91873 -13.83407 -13.63124 -13.48645 -13.16154 -13.01434 -12.96652 -12.80615 -12.75855 -12.69827 -12.60630 -12.58096 -12.44281 -12.33206 -12.18799 -11.96882 -11.79595 -11.31629 -11.12163 -10.79570 -10.55660 -10.31520 -10.21617 -9.90425 -9.23654 -8.76911 -8.51138 -6.51535 -0.09689 0.09889 1.32170 1.39209 1.48724 1.54040 2.00067 2.26530 2.39676 2.78336 2.87841 2.99278 3.25388 3.38794 3.80397 3.83158 3.92758 3.99124 4.08553 4.12399 4.20082 4.24580 4.28855 4.37429 4.48573 4.49879 4.53132 4.59799 4.65919 4.71623 4.74193 4.78792 4.85888 4.90927 4.99436 5.02866 5.09159 5.13200 5.14146 5.19895 5.23284 5.30321 5.36189 5.37531 5.54930 5.55860 5.57501 5.78890 5.93015 6.03362 6.10848 6.31851 6.43215 6.61622 6.85179 7.41532 7.64590 8.47209 Molecular weight = 357.18amu Principal moments of inertia in cm(-1) A = 0.008562 B = 0.004463 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3269.395409 B = 6271.800401 C = 8799.498715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.096 3.904 3 H 0.067 0.933 4 C 0.031 3.969 5 N -0.514 5.514 6 C 0.134 3.866 7 C 0.355 3.645 8 N -0.527 5.527 9 C 0.137 3.863 10 C -0.123 4.123 11 C -0.072 4.072 12 C -0.150 4.150 13 C -0.068 4.068 14 C -0.238 4.238 15 C 0.495 3.505 16 O -0.551 6.551 17 N -0.371 5.371 18 C -0.401 4.401 19 H 0.119 0.881 20 C 0.029 3.971 21 N -0.851 5.851 22 Si 0.994 3.006 23 H -0.249 1.249 24 H -0.288 1.288 25 H -0.258 1.258 26 C 0.029 3.971 27 C 0.115 3.885 28 C -0.132 4.132 29 C -0.162 4.162 30 O -0.388 6.388 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.057 0.943 34 H 0.022 0.978 35 H 0.087 0.913 36 H 0.103 0.897 37 H 0.060 0.940 38 H 0.151 0.849 39 H 0.171 0.829 40 H 0.156 0.844 41 H 0.108 0.892 42 H 0.275 0.725 43 H 0.093 0.907 44 H 0.039 0.961 45 H 0.070 0.930 46 H 0.087 0.913 47 H 0.060 0.940 48 H 0.056 0.944 49 H 0.070 0.930 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.201 4.453 -14.691 16.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.039 3.961 3 H 0.085 0.915 4 C -0.097 4.097 5 N -0.238 5.238 6 C 0.005 3.995 7 C 0.091 3.909 8 N -0.253 5.253 9 C 0.023 3.977 10 C -0.143 4.143 11 C -0.091 4.091 12 C -0.168 4.168 13 C -0.088 4.088 14 C -0.245 4.245 15 C 0.291 3.709 16 O -0.429 6.429 17 N -0.076 5.076 18 C -0.527 4.527 19 H 0.136 0.864 20 C -0.182 4.182 21 N -0.482 5.482 22 Si 0.815 3.185 23 H -0.173 1.173 24 H -0.214 1.214 25 H -0.182 1.182 26 C -0.099 4.099 27 C 0.075 3.925 28 C -0.189 4.189 29 C -0.219 4.219 30 O -0.308 6.308 31 H 0.097 0.903 32 H 0.093 0.907 33 H 0.076 0.924 34 H 0.040 0.960 35 H 0.105 0.895 36 H 0.121 0.879 37 H 0.078 0.922 38 H 0.169 0.831 39 H 0.189 0.811 40 H 0.174 0.826 41 H 0.126 0.874 42 H 0.084 0.916 43 H 0.112 0.888 44 H 0.057 0.943 45 H 0.089 0.911 46 H 0.106 0.894 47 H 0.079 0.921 48 H 0.075 0.925 49 H 0.089 0.911 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.005 5.007 -14.706 17.042 hybrid contribution 0.784 -1.890 2.240 3.034 sum -6.221 3.117 -12.466 14.277 Atomic orbital electron populations 1.21714 0.91798 1.02747 1.03266 1.22091 0.95295 0.95569 0.83179 0.91526 1.22858 0.87229 0.98912 1.00699 1.61860 1.09512 1.52047 1.00352 1.20672 1.01529 0.92354 0.84945 1.23352 0.90514 0.90918 0.86110 1.68558 1.24058 1.02411 1.30238 1.19328 0.95743 0.95509 0.87145 1.20996 1.01006 0.91283 1.01008 1.21569 0.96378 1.00126 0.91036 1.21339 1.01354 0.95282 0.98850 1.21006 0.96339 0.94335 0.97125 1.21021 1.10117 0.96234 0.97093 1.18901 0.80684 0.86606 0.84687 1.90589 1.53160 1.74172 1.24984 1.42335 1.44231 1.16234 1.04825 1.19934 1.15888 0.85775 1.31127 0.86400 1.26423 0.93974 1.03175 0.94674 1.69926 1.17297 1.33946 1.26998 0.84966 0.79214 0.76530 0.77798 1.17320 1.21391 1.18176 1.22907 1.01664 0.95640 0.89714 1.21643 0.80467 0.95806 0.94542 1.21738 1.02415 0.99830 0.94956 1.22207 1.01545 0.96050 1.02132 1.87960 1.21361 1.78355 1.43117 0.90321 0.90721 0.92428 0.96003 0.89496 0.87886 0.92212 0.83144 0.81114 0.82595 0.87383 0.91558 0.88835 0.94320 0.91078 0.89411 0.92125 0.92462 0.91127 0.91859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 9.57 71.98 0.69 -2.17 16 2 C 0.10 2.46 3.02 30.63 0.09 2.55 16 3 H 0.07 1.77 6.50 -2.38 -0.02 1.75 16 4 C 0.03 0.94 4.53 86.31 0.39 1.33 16 5 N -0.51 -15.87 3.71 -899.76 -3.33 -19.20 16 6 C 0.13 4.89 4.18 85.56 0.36 5.25 16 7 C 0.36 15.89 7.09 137.94 0.98 16.87 16 8 N -0.53 -22.16 7.39 -179.54 -1.33 -23.49 16 9 C 0.14 5.79 6.63 39.65 0.26 6.06 16 10 C -0.12 -3.97 10.03 22.48 0.23 -3.74 16 11 C -0.07 -1.90 10.00 22.30 0.22 -1.68 16 12 C -0.15 -4.52 10.02 22.31 0.22 -4.30 16 13 C -0.07 -2.83 9.68 22.44 0.22 -2.62 16 14 C -0.24 -11.46 5.89 -19.96 -0.12 -11.58 16 15 C 0.50 28.09 6.90 86.44 0.60 28.69 16 16 O -0.55 -34.81 14.29 -4.43 -0.06 -34.88 16 17 N -0.37 -19.57 2.67 -460.23 -1.23 -20.80 16 18 C -0.40 -20.98 8.25 84.07 0.69 -20.28 16 19 H 0.12 5.56 6.95 -2.91 -0.02 5.54 16 20 C 0.03 1.53 4.51 84.98 0.38 1.91 16 21 N -0.85 -50.02 11.39 21.68 0.25 -49.77 16 22 Si 0.99 41.57 29.58 68.60 2.03 43.60 16 23 H -0.25 -9.37 7.11 99.48 0.71 -8.66 16 24 H -0.29 -12.42 7.11 99.48 0.71 -11.72 16 25 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 26 C 0.03 0.72 4.34 86.31 0.37 1.10 16 27 C 0.11 2.59 1.11 -10.76 -0.01 2.58 16 28 C -0.13 -2.25 8.85 71.98 0.64 -1.61 16 29 C -0.16 -3.55 8.17 71.98 0.59 -2.96 16 30 O -0.39 -9.97 9.93 -148.98 -1.48 -11.45 16 31 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.07 1.35 8.14 -2.39 -0.02 1.34 16 33 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.02 0.67 8.14 -2.38 -0.02 0.65 16 35 H 0.09 2.96 5.86 -2.39 -0.01 2.95 16 36 H 0.10 3.77 8.04 -2.39 -0.02 3.75 16 37 H 0.06 2.13 7.30 -2.39 -0.02 2.11 16 38 H 0.15 4.04 8.06 -2.91 -0.02 4.02 16 39 H 0.17 2.82 8.06 -2.91 -0.02 2.80 16 40 H 0.16 3.48 8.06 -2.91 -0.02 3.45 16 41 H 0.11 4.68 7.83 -2.91 -0.02 4.66 16 42 H 0.27 15.32 8.30 -92.71 -0.77 14.55 16 43 H 0.09 2.17 8.09 -2.38 -0.02 2.15 16 44 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 46 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 47 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 48 H 0.06 1.51 6.13 -2.39 -0.01 1.50 16 49 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 50 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -72.43 393.65 2.59 -69.84 By element: Atomic # 1 Polarization: 29.81 SS G_CDS: 0.94 Total: 30.76 kcal Atomic # 6 Polarization: 8.58 SS G_CDS: 6.80 Total: 15.39 kcal Atomic # 7 Polarization: -107.62 SS G_CDS: -5.64 Total: -113.26 kcal Atomic # 8 Polarization: -44.78 SS G_CDS: -1.54 Total: -46.32 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.60 kcal Total: -72.43 2.59 -69.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071831061.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.269 kcal (2) G-P(sol) polarization free energy of solvation -72.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds