Wall clock time and date at job start Tue Mar 31 2020 05:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47538 * 2 1 4 4 C 1.50699 * 109.47143 * 120.00252 * 2 1 3 5 5 H 1.08003 * 119.99994 * 119.99845 * 4 2 1 6 6 C 1.37878 * 120.00193 * 300.00005 * 4 2 1 7 7 N 1.31513 * 120.00424 * 179.97438 * 6 4 2 8 8 Si 1.86797 * 119.99746 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.47024 * 90.00289 * 8 6 4 10 10 H 1.48499 * 109.47267 * 209.99937 * 8 6 4 11 11 H 1.48498 * 109.47277 * 330.00408 * 8 6 4 12 12 N 1.46500 * 109.47128 * 239.99829 * 2 1 3 13 13 C 1.46506 * 120.00367 * 300.00445 * 12 2 1 14 14 C 1.34782 * 119.99884 * 119.99743 * 12 2 1 15 15 O 1.21554 * 119.99595 * 4.35499 * 14 12 2 16 16 C 1.47845 * 119.99967 * 184.34569 * 14 12 2 17 17 C 1.39589 * 120.14816 * 320.31836 * 16 14 12 18 18 C 1.37941 * 119.85611 * 179.78823 * 17 16 14 19 19 C 1.38378 * 120.13889 * 0.48555 * 18 17 16 20 20 C 1.38341 * 120.29744 * 359.74839 * 19 18 17 21 21 C 1.50702 * 119.92912 * 179.97438 * 20 19 18 22 22 O 1.42891 * 109.47005 * 270.01815 * 21 20 19 23 23 C 1.35905 * 116.99978 * 179.97438 * 22 21 20 24 24 C 1.38768 * 120.03884 * 359.72726 * 23 22 21 25 25 C 1.38135 * 119.99189 * 179.74228 * 24 23 22 26 26 C 1.38258 * 120.07698 * 0.53367 * 25 24 23 27 27 C 1.38467 * 120.08548 * 359.73942 * 26 25 24 28 28 F 1.35101 * 119.99441 * 179.97438 * 27 26 25 29 29 C 1.38384 * 120.00960 * 359.97438 * 27 26 25 30 30 C 1.37976 * 120.14341 * 0.02562 * 20 19 18 31 31 H 1.09004 * 109.46750 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46709 * 299.99890 * 1 2 3 33 33 H 1.08997 * 109.46903 * 60.00221 * 1 2 3 34 34 H 0.96995 * 120.00404 * 179.97438 * 7 6 4 35 35 H 1.08995 * 109.46609 * 271.72163 * 13 12 2 36 36 H 1.08996 * 109.46926 * 151.72048 * 13 12 2 37 37 H 1.09000 * 109.46827 * 31.71702 * 13 12 2 38 38 H 1.08004 * 120.07558 * 0.02562 * 17 16 14 39 39 H 1.07992 * 119.93026 * 180.23466 * 18 17 16 40 40 H 1.07999 * 119.85362 * 179.71663 * 19 18 17 41 41 H 1.08997 * 109.46867 * 30.01998 * 21 20 19 42 42 H 1.08998 * 109.46765 * 150.01527 * 21 20 19 43 43 H 1.07995 * 120.00499 * 0.02562 * 24 23 22 44 44 H 1.07993 * 119.96233 * 180.27659 * 25 24 23 45 45 H 1.08000 * 119.95228 * 179.76626 * 26 25 24 46 46 H 1.07999 * 120.04209 * 180.02562 * 29 27 26 47 47 H 1.07996 * 120.07566 * 179.97438 * 30 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 2.1372 -0.8598 3.5565 8 14 0.6260 1.2797 2.6542 9 1 -0.8019 0.8743 2.6994 10 1 0.9772 1.9952 3.9071 11 1 0.8492 2.1772 1.4924 12 7 2.0184 -0.6906 -1.1961 13 6 1.6644 -2.0933 -1.4281 14 6 2.7932 -0.0356 -2.0834 15 8 3.1522 1.1026 -1.8527 16 6 3.2066 -0.7015 -3.3369 17 6 3.5666 -2.0502 -3.3286 18 6 3.9471 -2.6666 -4.5025 19 6 3.9822 -1.9484 -5.6848 20 6 3.6313 -0.6103 -5.6991 21 6 3.6730 0.1642 -6.9912 22 8 4.9673 0.7470 -7.1556 23 6 5.1741 1.4837 -8.2789 24 6 4.1535 1.6373 -9.2065 25 6 4.3630 2.3906 -10.3452 26 6 5.5923 2.9830 -10.5677 27 6 6.6147 2.8271 -9.6469 28 9 7.8153 3.4064 -9.8664 29 6 6.4068 2.0781 -8.5020 30 6 3.2444 0.0171 -4.5327 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3632 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.9033 -0.5282 4.4375 35 1 2.3991 -2.7378 -0.9457 36 1 1.6537 -2.2928 -2.4996 37 1 0.6771 -2.2924 -1.0114 38 1 3.5435 -2.6109 -2.4058 39 1 4.2222 -3.7109 -4.4981 40 1 4.2852 -2.4344 -6.6003 41 1 3.4688 -0.5081 -7.8245 42 1 2.9201 0.9520 -6.9671 43 1 3.1941 1.1718 -9.0360 44 1 3.5670 2.5136 -11.0646 45 1 5.7551 3.5684 -11.4605 46 1 7.2038 1.9565 -7.7834 47 1 2.9711 1.0619 -4.5451 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071907600.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:27 Heat of formation + Delta-G solvation = -44.260826 kcal Electronic energy + Delta-G solvation = -30197.147406 eV Core-core repulsion = 25839.713615 eV Total energy + Delta-G solvation = -4357.433792 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 357.153 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.27098 -40.65806 -40.02594 -38.43028 -37.42571 -35.62976 -33.28313 -32.36008 -31.34556 -31.12015 -30.20503 -29.89727 -26.97871 -26.32651 -25.20096 -23.96934 -23.36939 -22.81307 -21.72212 -20.94255 -18.98289 -18.79097 -17.32795 -16.88938 -16.67153 -16.54452 -16.45713 -16.37010 -16.12556 -15.89407 -15.67209 -15.08775 -14.90057 -14.66610 -14.23054 -14.12671 -13.83536 -13.33479 -13.22545 -13.11850 -12.92840 -12.68549 -12.67212 -12.40397 -12.28696 -12.18972 -11.94777 -11.79479 -11.56333 -11.50626 -11.29022 -11.19143 -11.04780 -10.68942 -10.17413 -9.70952 -9.40867 -9.30151 -9.23967 -9.05143 -8.88925 -8.70693 -8.66568 -7.81250 -6.17495 -4.18455 0.71066 0.87451 0.88493 1.13357 2.68052 3.17411 3.20560 3.23453 3.34989 3.36981 3.62005 3.83197 3.98288 4.24146 4.32369 4.46650 4.50870 4.53726 4.61048 4.73871 4.81162 4.90337 4.95594 4.98092 5.06087 5.14351 5.21899 5.40204 5.52224 5.57313 5.66616 5.70149 5.79400 5.82540 5.89022 5.91905 6.12993 6.18773 6.21958 6.27119 6.28496 6.29546 6.32142 6.42721 6.72710 6.78814 6.94973 7.06594 7.26418 7.57879 8.09236 8.41094 8.76074 8.84231 9.42972 10.95138 Molecular weight = 357.15amu Principal moments of inertia in cm(-1) A = 0.016825 B = 0.001890 C = 0.001803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.756269 B =14812.676953 C =15522.679792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.229 3.771 3 H 0.064 0.936 4 C -0.527 4.527 5 H 0.079 0.921 6 C 0.075 3.925 7 N -0.894 5.894 8 Si 0.883 3.117 9 H -0.277 1.277 10 H -0.293 1.293 11 H -0.263 1.263 12 N -0.579 5.579 13 C 0.078 3.922 14 C 0.546 3.454 15 O -0.544 6.544 16 C -0.117 4.117 17 C -0.078 4.078 18 C -0.130 4.130 19 C -0.080 4.080 20 C -0.113 4.113 21 C 0.106 3.894 22 O -0.302 6.302 23 C 0.165 3.835 24 C -0.222 4.222 25 C -0.050 4.050 26 C -0.196 4.196 27 C 0.139 3.861 28 F -0.135 7.135 29 C -0.191 4.191 30 C -0.044 4.044 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.033 0.967 34 H 0.266 0.734 35 H 0.058 0.942 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.141 0.859 39 H 0.131 0.869 40 H 0.125 0.875 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.136 0.864 44 H 0.136 0.864 45 H 0.136 0.864 46 H 0.144 0.856 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.543 -1.095 -28.915 28.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.127 3.873 3 H 0.081 0.919 4 C -0.566 4.566 5 H 0.097 0.903 6 C -0.128 4.128 7 N -0.531 5.531 8 Si 0.713 3.287 9 H -0.204 1.204 10 H -0.221 1.221 11 H -0.188 1.188 12 N -0.309 5.309 13 C -0.065 4.065 14 C 0.333 3.667 15 O -0.423 6.423 16 C -0.120 4.120 17 C -0.097 4.097 18 C -0.148 4.148 19 C -0.098 4.098 20 C -0.113 4.113 21 C 0.031 3.969 22 O -0.215 6.215 23 C 0.118 3.882 24 C -0.241 4.241 25 C -0.068 4.068 26 C -0.215 4.215 27 C 0.120 3.880 28 F -0.113 7.113 29 C -0.211 4.211 30 C -0.063 4.063 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.052 0.948 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.092 0.908 38 H 0.159 0.841 39 H 0.149 0.851 40 H 0.143 0.857 41 H 0.093 0.907 42 H 0.094 0.906 43 H 0.154 0.846 44 H 0.154 0.846 45 H 0.154 0.846 46 H 0.162 0.838 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 1.881 -0.533 -28.383 28.450 hybrid contribution -0.546 0.693 0.262 0.920 sum 1.335 0.160 -28.121 28.153 Atomic orbital electron populations 1.22466 0.98966 1.01168 0.99365 1.19338 0.90008 0.95244 0.82679 0.91867 1.21121 1.32787 1.14260 0.88387 0.90323 1.24868 0.95689 0.96585 0.95626 1.69865 1.45120 1.40146 0.97976 0.86915 0.80379 0.83844 0.77563 1.20377 1.22074 1.18808 1.47800 1.48642 1.11856 1.22563 1.21972 1.01877 0.82704 0.99963 1.18246 0.79304 0.85994 0.83173 1.90752 1.55506 1.18525 1.77490 1.20130 1.03038 0.94496 0.94386 1.21827 0.94957 0.93528 0.99358 1.21098 1.01127 1.00413 0.92206 1.21148 0.96777 0.93390 0.98500 1.19259 1.04179 0.94191 0.93640 1.21639 0.83339 0.96307 0.95594 1.86219 1.34444 1.62859 1.37966 1.18647 0.93078 0.90514 0.85948 1.21368 0.99870 1.06103 0.96730 1.20790 0.96152 0.93752 0.96098 1.21051 0.93452 1.05931 1.01082 1.17294 0.81239 0.94810 0.94688 1.91524 1.43027 1.82144 1.94612 1.20310 0.97896 1.03422 0.99433 1.21066 0.95301 0.99555 0.90368 0.92428 0.93003 0.94772 0.92392 0.92404 0.91769 0.90843 0.84103 0.85119 0.85689 0.90677 0.90632 0.84633 0.84636 0.84633 0.83770 0.85047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.41 8.65 37.16 0.32 -3.09 16 2 C 0.23 5.48 2.23 -69.08 -0.15 5.33 16 3 H 0.06 1.69 5.96 -51.93 -0.31 1.38 16 4 C -0.53 -14.45 8.95 -34.44 -0.31 -14.76 16 5 H 0.08 2.31 7.85 -52.48 -0.41 1.90 16 6 C 0.08 2.13 5.45 -17.82 -0.10 2.04 16 7 N -0.89 -26.72 13.96 55.43 0.77 -25.95 16 8 Si 0.88 21.70 24.37 -169.99 -4.14 17.56 16 9 H -0.28 -6.47 6.87 56.52 0.39 -6.08 16 10 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 11 H -0.26 -6.40 6.53 56.52 0.37 -6.03 16 12 N -0.58 -11.80 2.75 -176.37 -0.49 -12.28 16 13 C 0.08 1.23 8.14 59.85 0.49 1.72 16 14 C 0.55 11.10 7.35 -12.33 -0.09 11.01 16 15 O -0.54 -13.19 16.25 5.32 0.09 -13.11 16 16 C -0.12 -1.83 5.22 -104.97 -0.55 -2.38 16 17 C -0.08 -1.00 7.47 -39.19 -0.29 -1.30 16 18 C -0.13 -1.31 10.03 -39.64 -0.40 -1.71 16 19 C -0.08 -0.77 9.69 -39.49 -0.38 -1.15 16 20 C -0.11 -1.22 5.50 -104.68 -0.58 -1.80 16 21 C 0.11 0.91 4.86 36.01 0.17 1.08 16 22 O -0.30 -3.28 10.12 -19.44 -0.20 -3.47 16 23 C 0.16 1.60 6.69 -39.23 -0.26 1.33 16 24 C -0.22 -1.66 9.04 -39.42 -0.36 -2.02 16 25 C -0.05 -0.32 10.04 -39.61 -0.40 -0.72 16 26 C -0.20 -1.46 10.02 -39.49 -0.40 -1.86 16 27 C 0.14 1.30 7.30 -39.44 -0.29 1.01 16 28 F -0.13 -1.36 17.27 2.25 0.04 -1.32 16 29 C -0.19 -1.90 9.97 -39.37 -0.39 -2.29 16 30 C -0.04 -0.60 9.28 -39.18 -0.36 -0.97 16 31 H 0.06 1.12 6.67 -51.93 -0.35 0.77 16 32 H 0.05 1.14 3.27 -51.93 -0.17 0.97 16 33 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 35 H 0.06 0.90 7.23 -51.93 -0.38 0.53 16 36 H 0.06 0.82 5.37 -51.93 -0.28 0.54 16 37 H 0.07 1.14 6.43 -51.93 -0.33 0.81 16 38 H 0.14 1.75 5.55 -52.48 -0.29 1.46 16 39 H 0.13 0.97 8.06 -52.49 -0.42 0.54 16 40 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 41 H 0.08 0.46 7.59 -51.93 -0.39 0.06 16 42 H 0.08 0.56 7.62 -51.93 -0.40 0.17 16 43 H 0.14 0.74 6.30 -52.49 -0.33 0.41 16 44 H 0.14 0.51 8.06 -52.49 -0.42 0.08 16 45 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 46 H 0.14 1.39 8.06 -52.49 -0.42 0.96 16 47 H 0.13 1.82 8.06 -52.49 -0.42 1.40 16 LS Contribution 385.73 15.07 5.81 5.81 Total: -1.00 -33.89 385.73 -8.21 -42.10 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -5.78 Total: 1.17 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: -4.32 Total: -10.52 kcal Atomic # 7 Polarization: -38.52 SS G_CDS: 0.29 Total: -38.23 kcal Atomic # 8 Polarization: -16.47 SS G_CDS: -0.11 Total: -16.58 kcal Atomic # 9 Polarization: -1.36 SS G_CDS: 0.04 Total: -1.32 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.14 Total: 17.56 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.89 -8.21 -42.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071907600.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.158 kcal (2) G-P(sol) polarization free energy of solvation -33.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds