Wall clock time and date at job start Tue Mar 31 2020 05:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47538 * 2 1 4 4 C 1.50699 * 109.47143 * 120.00252 * 2 1 3 5 5 H 1.08003 * 119.99994 * 119.99845 * 4 2 1 6 6 C 1.37878 * 120.00193 * 300.00005 * 4 2 1 7 7 N 1.31513 * 120.00424 * 179.97438 * 6 4 2 8 8 Si 1.86797 * 119.99746 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.47024 * 90.00289 * 8 6 4 10 10 H 1.48499 * 109.47267 * 209.99937 * 8 6 4 11 11 H 1.48498 * 109.47277 * 330.00408 * 8 6 4 12 12 N 1.46500 * 109.47128 * 239.99829 * 2 1 3 13 13 C 1.46506 * 120.00367 * 300.00445 * 12 2 1 14 14 C 1.34782 * 119.99884 * 119.99743 * 12 2 1 15 15 O 1.21554 * 119.99595 * 4.35499 * 14 12 2 16 16 C 1.47845 * 119.99967 * 184.34569 * 14 12 2 17 17 C 1.39589 * 120.14816 * 320.31836 * 16 14 12 18 18 C 1.37941 * 119.85611 * 179.78823 * 17 16 14 19 19 C 1.38378 * 120.13889 * 0.48555 * 18 17 16 20 20 C 1.38341 * 120.29744 * 359.74839 * 19 18 17 21 21 C 1.50702 * 119.92912 * 179.97438 * 20 19 18 22 22 O 1.42891 * 109.47005 * 270.01815 * 21 20 19 23 23 C 1.35905 * 116.99978 * 179.97438 * 22 21 20 24 24 C 1.38768 * 120.03884 * 359.72726 * 23 22 21 25 25 C 1.38135 * 119.99189 * 179.74228 * 24 23 22 26 26 C 1.38258 * 120.07698 * 0.53367 * 25 24 23 27 27 C 1.38467 * 120.08548 * 359.73942 * 26 25 24 28 28 F 1.35101 * 119.99441 * 179.97438 * 27 26 25 29 29 C 1.38384 * 120.00960 * 359.97438 * 27 26 25 30 30 C 1.37976 * 120.14341 * 0.02562 * 20 19 18 31 31 H 1.09004 * 109.46750 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46709 * 299.99890 * 1 2 3 33 33 H 1.08997 * 109.46903 * 60.00221 * 1 2 3 34 34 H 0.96995 * 120.00404 * 179.97438 * 7 6 4 35 35 H 1.08995 * 109.46609 * 271.72163 * 13 12 2 36 36 H 1.08996 * 109.46926 * 151.72048 * 13 12 2 37 37 H 1.09000 * 109.46827 * 31.71702 * 13 12 2 38 38 H 1.08004 * 120.07558 * 0.02562 * 17 16 14 39 39 H 1.07992 * 119.93026 * 180.23466 * 18 17 16 40 40 H 1.07999 * 119.85362 * 179.71663 * 19 18 17 41 41 H 1.08997 * 109.46867 * 30.01998 * 21 20 19 42 42 H 1.08998 * 109.46765 * 150.01527 * 21 20 19 43 43 H 1.07995 * 120.00499 * 0.02562 * 24 23 22 44 44 H 1.07993 * 119.96233 * 180.27659 * 25 24 23 45 45 H 1.08000 * 119.95228 * 179.76626 * 26 25 24 46 46 H 1.07999 * 120.04209 * 180.02562 * 29 27 26 47 47 H 1.07996 * 120.07566 * 179.97438 * 30 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 2.1372 -0.8598 3.5565 8 14 0.6260 1.2797 2.6542 9 1 -0.8019 0.8743 2.6994 10 1 0.9772 1.9952 3.9071 11 1 0.8492 2.1772 1.4924 12 7 2.0184 -0.6906 -1.1961 13 6 1.6644 -2.0933 -1.4281 14 6 2.7932 -0.0356 -2.0834 15 8 3.1522 1.1026 -1.8527 16 6 3.2066 -0.7015 -3.3369 17 6 3.5666 -2.0502 -3.3286 18 6 3.9471 -2.6666 -4.5025 19 6 3.9822 -1.9484 -5.6848 20 6 3.6313 -0.6103 -5.6991 21 6 3.6730 0.1642 -6.9912 22 8 4.9673 0.7470 -7.1556 23 6 5.1741 1.4837 -8.2789 24 6 4.1535 1.6373 -9.2065 25 6 4.3630 2.3906 -10.3452 26 6 5.5923 2.9830 -10.5677 27 6 6.6147 2.8271 -9.6469 28 9 7.8153 3.4064 -9.8664 29 6 6.4068 2.0781 -8.5020 30 6 3.2444 0.0171 -4.5327 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3632 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.9033 -0.5282 4.4375 35 1 2.3991 -2.7378 -0.9457 36 1 1.6537 -2.2928 -2.4996 37 1 0.6771 -2.2924 -1.0114 38 1 3.5435 -2.6109 -2.4058 39 1 4.2222 -3.7109 -4.4981 40 1 4.2852 -2.4344 -6.6003 41 1 3.4688 -0.5081 -7.8245 42 1 2.9201 0.9520 -6.9671 43 1 3.1941 1.1718 -9.0360 44 1 3.5670 2.5136 -11.0646 45 1 5.7551 3.5684 -11.4605 46 1 7.2038 1.9565 -7.7834 47 1 2.9711 1.0619 -4.5451 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071907600.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:26 Heat of formation + Delta-G solvation = -64.662036 kcal Electronic energy + Delta-G solvation = -30198.032069 eV Core-core repulsion = 25839.713615 eV Total energy + Delta-G solvation = -4358.318454 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 357.153 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -49.98598 -41.57780 -41.07200 -39.56278 -38.14567 -37.36511 -34.97325 -33.64215 -32.56381 -31.81932 -31.49706 -30.65508 -28.07909 -27.41309 -27.19377 -25.27374 -23.98441 -23.51426 -22.79189 -22.23980 -20.28670 -19.62072 -18.97776 -18.16940 -17.82185 -17.45601 -17.27602 -17.13002 -17.08540 -17.00493 -16.64699 -16.60900 -16.03740 -15.65683 -15.38765 -15.06669 -14.87718 -14.71789 -14.54637 -14.29477 -14.15937 -13.93629 -13.84974 -13.53659 -13.47586 -13.30212 -13.09500 -13.01285 -12.80172 -12.71046 -12.52825 -12.22043 -12.08245 -11.93787 -11.83581 -11.61682 -11.39055 -10.85100 -10.81213 -9.99125 -9.92701 -9.89577 -9.48066 -9.32820 -8.37651 -6.42464 -0.09371 0.09923 0.20591 0.27700 1.23451 1.33777 1.42160 1.68869 2.12572 2.15901 2.25255 2.58079 2.82885 2.97201 3.34125 3.50713 3.59327 3.81024 3.86221 3.98288 4.02581 4.08518 4.14912 4.21212 4.25825 4.36974 4.39593 4.40183 4.45020 4.52226 4.54779 4.58061 4.69102 4.79378 4.89298 4.95437 4.99831 5.02133 5.08488 5.21077 5.24623 5.32817 5.35820 5.36782 5.42556 5.44766 5.64588 5.70631 5.86710 6.16241 6.32039 6.57132 6.62926 7.13483 7.27472 8.78192 Molecular weight = 357.15amu Principal moments of inertia in cm(-1) A = 0.016825 B = 0.001890 C = 0.001803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.756269 B =14812.676953 C =15522.679792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.230 3.770 3 H 0.029 0.971 4 C -0.526 4.526 5 H 0.046 0.954 6 C 0.022 3.978 7 N -0.937 5.937 8 Si 0.941 3.059 9 H -0.250 1.250 10 H -0.295 1.295 11 H -0.264 1.264 12 N -0.586 5.586 13 C 0.077 3.923 14 C 0.539 3.461 15 O -0.599 6.599 16 C -0.144 4.144 17 C -0.085 4.085 18 C -0.119 4.119 19 C -0.065 4.065 20 C -0.109 4.109 21 C 0.102 3.898 22 O -0.326 6.326 23 C 0.148 3.852 24 C -0.217 4.217 25 C -0.044 4.044 26 C -0.194 4.194 27 C 0.119 3.881 28 F -0.146 7.146 29 C -0.213 4.213 30 C -0.057 4.057 31 H 0.074 0.926 32 H 0.044 0.956 33 H 0.056 0.944 34 H 0.269 0.731 35 H 0.055 0.945 36 H 0.100 0.900 37 H 0.077 0.923 38 H 0.140 0.860 39 H 0.167 0.833 40 H 0.164 0.836 41 H 0.110 0.890 42 H 0.084 0.916 43 H 0.161 0.839 44 H 0.171 0.829 45 H 0.155 0.845 46 H 0.132 0.868 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.323 -2.356 -32.801 32.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.126 3.874 3 H 0.047 0.953 4 C -0.565 4.565 5 H 0.064 0.936 6 C -0.177 4.177 7 N -0.576 5.576 8 Si 0.768 3.232 9 H -0.175 1.175 10 H -0.223 1.223 11 H -0.189 1.189 12 N -0.315 5.315 13 C -0.065 4.065 14 C 0.328 3.672 15 O -0.482 6.482 16 C -0.147 4.147 17 C -0.104 4.104 18 C -0.136 4.136 19 C -0.083 4.083 20 C -0.109 4.109 21 C 0.028 3.972 22 O -0.240 6.240 23 C 0.102 3.898 24 C -0.235 4.235 25 C -0.061 4.061 26 C -0.213 4.213 27 C 0.100 3.900 28 F -0.124 7.124 29 C -0.233 4.233 30 C -0.076 4.076 31 H 0.093 0.907 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.118 0.882 37 H 0.096 0.904 38 H 0.157 0.843 39 H 0.184 0.816 40 H 0.181 0.819 41 H 0.128 0.872 42 H 0.102 0.898 43 H 0.179 0.821 44 H 0.189 0.811 45 H 0.173 0.827 46 H 0.150 0.850 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -0.005 -1.836 -32.295 32.348 hybrid contribution 0.153 1.015 1.346 1.692 sum 0.148 -0.822 -30.950 30.961 Atomic orbital electron populations 1.22312 0.96174 1.02568 1.00067 1.19027 0.92090 0.93350 0.82901 0.95304 1.21316 1.31870 1.13171 0.90099 0.93596 1.25655 0.97204 0.99501 0.95320 1.69991 1.46992 1.42073 0.98581 0.85980 0.80047 0.80114 0.77076 1.17486 1.22280 1.18938 1.47857 1.48620 1.13510 1.21500 1.22197 1.01831 0.80003 1.02435 1.19069 0.78149 0.85501 0.84443 1.90699 1.57527 1.21083 1.78894 1.19796 1.06461 0.95881 0.92520 1.21869 0.95525 0.92258 1.00728 1.21481 0.99186 1.01937 0.91005 1.21638 0.94237 0.92637 0.99793 1.19506 1.02872 0.95078 0.93453 1.21815 0.82816 0.97116 0.95406 1.86160 1.35544 1.63480 1.38843 1.18780 0.93565 0.91103 0.86356 1.21693 1.00077 1.05613 0.96144 1.21230 0.96434 0.92268 0.96206 1.21378 0.93238 1.05608 1.01076 1.17540 0.81572 0.95558 0.95368 1.91490 1.43806 1.82422 1.94702 1.20380 0.98366 1.04640 0.99888 1.21065 0.96424 0.99067 0.91082 0.90701 0.93755 0.92473 0.92199 0.92638 0.88156 0.90411 0.84266 0.81567 0.81855 0.87175 0.89785 0.82143 0.81113 0.82688 0.84955 0.86538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.33 8.65 71.98 0.62 -5.71 16 2 C 0.23 11.27 2.23 44.25 0.10 11.37 16 3 H 0.03 1.62 5.96 -2.39 -0.01 1.61 16 4 C -0.53 -29.89 8.95 25.60 0.23 -29.67 16 5 H 0.05 2.83 7.85 -2.91 -0.02 2.81 16 6 C 0.02 1.29 5.45 84.66 0.46 1.75 16 7 N -0.94 -57.73 13.96 21.45 0.30 -57.44 16 8 Si 0.94 45.40 24.37 68.60 1.67 47.07 16 9 H -0.25 -10.91 6.87 99.48 0.68 -10.23 16 10 H -0.30 -14.22 7.11 99.48 0.71 -13.52 16 11 H -0.26 -12.72 6.53 99.48 0.65 -12.07 16 12 N -0.59 -24.48 2.75 -830.20 -2.29 -26.76 16 13 C 0.08 2.40 8.14 127.77 1.04 3.44 16 14 C 0.54 22.84 7.35 86.79 0.64 23.47 16 15 O -0.60 -30.98 16.25 -3.89 -0.06 -31.04 16 16 C -0.14 -4.51 5.22 -20.09 -0.10 -4.61 16 17 C -0.09 -2.06 7.47 22.53 0.17 -1.89 16 18 C -0.12 -1.93 10.03 22.23 0.22 -1.71 16 19 C -0.07 -0.97 9.69 22.33 0.22 -0.75 16 20 C -0.11 -2.09 5.50 -19.90 -0.11 -2.20 16 21 C 0.10 1.45 4.86 71.24 0.35 1.80 16 22 O -0.33 -6.61 10.12 -92.49 -0.94 -7.55 16 23 C 0.15 2.68 6.69 22.50 0.15 2.83 16 24 C -0.22 -2.56 9.04 22.37 0.20 -2.36 16 25 C -0.04 -0.41 10.04 22.25 0.22 -0.19 16 26 C -0.19 -2.48 10.02 22.33 0.22 -2.26 16 27 C 0.12 2.19 7.30 22.36 0.16 2.35 16 28 F -0.15 -3.00 17.27 44.97 0.78 -2.22 16 29 C -0.21 -4.30 9.97 22.41 0.22 -4.07 16 30 C -0.06 -1.56 9.28 22.53 0.21 -1.35 16 31 H 0.07 2.79 6.67 -2.38 -0.02 2.78 16 32 H 0.04 1.89 3.27 -2.39 -0.01 1.88 16 33 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 35 H 0.06 1.74 7.23 -2.39 -0.02 1.73 16 36 H 0.10 2.39 5.37 -2.39 -0.01 2.37 16 37 H 0.08 2.33 6.43 -2.39 -0.02 2.32 16 38 H 0.14 3.34 5.55 -2.91 -0.02 3.32 16 39 H 0.17 1.57 8.06 -2.91 -0.02 1.55 16 40 H 0.16 1.26 8.06 -2.91 -0.02 1.24 16 41 H 0.11 0.79 7.59 -2.39 -0.02 0.77 16 42 H 0.08 1.04 7.62 -2.39 -0.02 1.02 16 43 H 0.16 1.02 6.30 -2.91 -0.02 1.00 16 44 H 0.17 0.40 8.06 -2.91 -0.02 0.38 16 45 H 0.16 1.30 8.06 -2.91 -0.02 1.28 16 46 H 0.13 2.79 8.06 -2.91 -0.02 2.76 16 47 H 0.12 3.40 8.06 -2.91 -0.02 3.38 16 Total: -1.00 -80.14 385.73 5.62 -74.53 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: 0.93 Total: 13.18 kcal Atomic # 6 Polarization: -14.98 SS G_CDS: 5.22 Total: -9.76 kcal Atomic # 7 Polarization: -82.21 SS G_CDS: -1.99 Total: -84.20 kcal Atomic # 8 Polarization: -37.60 SS G_CDS: -1.00 Total: -38.60 kcal Atomic # 9 Polarization: -3.00 SS G_CDS: 0.78 Total: -2.22 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 1.67 Total: 47.07 kcal Total: -80.14 5.62 -74.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071907600.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.863 kcal (2) G-P(sol) polarization free energy of solvation -80.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds