Wall clock time and date at job start Tue Mar 31 2020 05:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47579 * 2 1 4 4 C 1.50707 * 109.46864 * 239.99964 * 2 1 3 5 5 H 1.08000 * 119.99819 * 240.00098 * 4 2 1 6 6 C 1.37874 * 119.99767 * 60.00412 * 4 2 1 7 7 N 1.31518 * 119.99911 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00089 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47100 * 179.97438 * 8 6 4 10 10 H 1.48496 * 109.47095 * 300.00575 * 8 6 4 11 11 H 1.48509 * 109.46542 * 60.00054 * 8 6 4 12 12 N 1.46498 * 109.46913 * 120.00590 * 2 1 3 13 13 C 1.46496 * 120.00385 * 59.99982 * 12 2 1 14 14 C 1.34786 * 119.99900 * 239.99263 * 12 2 1 15 15 O 1.21552 * 119.99545 * 6.99047 * 14 12 2 16 16 C 1.47839 * 120.00051 * 186.98467 * 14 12 2 17 17 C 1.39606 * 120.14649 * 20.30425 * 16 14 12 18 18 C 1.37931 * 119.85380 * 179.78634 * 17 16 14 19 19 C 1.38379 * 120.14445 * 0.48916 * 18 17 16 20 20 C 1.38343 * 120.29390 * 359.74009 * 19 18 17 21 21 C 1.50702 * 119.92660 * 180.02562 * 20 19 18 22 22 O 1.42898 * 109.47173 * 270.02360 * 21 20 19 23 23 C 1.35899 * 117.00044 * 180.02562 * 22 21 20 24 24 C 1.38771 * 120.04244 * 359.72089 * 23 22 21 25 25 C 1.38132 * 119.99036 * 179.74593 * 24 23 22 26 26 C 1.38250 * 120.08304 * 0.53143 * 25 24 23 27 27 C 1.38469 * 120.08279 * 359.74381 * 26 25 24 28 28 F 1.35105 * 119.99810 * 179.97438 * 27 26 25 29 29 C 1.38385 * 120.01080 * 359.97438 * 27 26 25 30 30 C 1.37978 * 120.14650 * 0.02562 * 20 19 18 31 31 H 1.09000 * 109.47176 * 59.99467 * 1 2 3 32 32 H 1.08995 * 109.47579 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.46516 * 299.99929 * 1 2 3 34 34 H 0.97002 * 119.99703 * 180.02562 * 7 6 4 35 35 H 1.08997 * 109.47669 * 85.92450 * 13 12 2 36 36 H 1.09003 * 109.47213 * 205.93270 * 13 12 2 37 37 H 1.09002 * 109.47013 * 325.92214 * 13 12 2 38 38 H 1.07999 * 120.06919 * 359.97438 * 17 16 14 39 39 H 1.07996 * 119.92689 * 180.22763 * 18 17 16 40 40 H 1.08001 * 119.85600 * 179.72034 * 19 18 17 41 41 H 1.09005 * 109.47135 * 30.02295 * 21 20 19 42 42 H 1.08998 * 109.46782 * 150.02012 * 21 20 19 43 43 H 1.07994 * 120.00037 * 0.02562 * 24 23 22 44 44 H 1.08000 * 119.95295 * 180.27580 * 25 24 23 45 45 H 1.07999 * 119.95656 * 179.76595 * 26 25 24 46 46 H 1.07999 * 120.04540 * 180.02562 * 29 27 26 47 47 H 1.07994 * 120.07216 * 179.97438 * 30 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9436 0.8303 -2.6033 8 14 2.3223 -1.1194 -4.0080 9 1 1.8267 -0.4197 -5.2204 10 1 3.8073 -1.1191 -4.0078 11 1 1.8277 -2.5197 -4.0082 12 7 2.0183 -0.6907 1.1961 13 6 1.6644 -2.0933 1.4279 14 6 2.7933 -0.0358 2.0833 15 8 2.9828 1.1584 1.9594 16 6 3.4126 -0.7700 3.2072 17 6 3.5653 -2.1560 3.1399 18 6 4.1480 -2.8344 4.1901 19 6 4.5716 -2.1453 5.3128 20 6 4.4190 -0.7724 5.3879 21 6 4.8839 -0.0302 6.6144 22 8 3.8170 0.0383 7.5626 23 6 4.0720 0.6804 8.7329 24 6 5.3256 1.2281 8.9660 25 6 5.5820 1.8850 10.1538 26 6 4.5945 1.9882 11.1158 27 6 3.3443 1.4380 10.8889 28 9 2.3807 1.5394 11.8305 29 6 3.0816 0.7841 9.6979 30 6 3.8421 -0.0811 4.3424 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3632 0.5139 0.8901 34 1 0.7090 1.1616 -3.4843 35 1 2.3752 -2.7377 0.9107 36 1 1.6943 -2.3037 2.4970 37 1 0.6601 -2.2821 1.0485 38 1 3.2306 -2.6955 2.2662 39 1 4.2700 -3.9061 4.1377 40 1 5.0232 -2.6817 6.1343 41 1 5.7306 -0.5547 7.0573 42 1 5.1872 0.9788 6.3351 43 1 6.0991 1.1447 8.2170 44 1 6.5564 2.3150 10.3327 45 1 4.7984 2.4990 12.0453 46 1 2.1065 0.3551 9.5202 47 1 3.7231 0.9906 4.4025 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071907601.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:31 Heat of formation + Delta-G solvation = -40.093321 kcal Electronic energy + Delta-G solvation = -30167.250086 eV Core-core repulsion = 25809.997011 eV Total energy + Delta-G solvation = -4357.253075 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 357.153 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.25762 -40.62382 -39.98083 -38.30102 -37.36780 -35.50383 -33.38917 -32.29180 -31.17552 -31.06538 -30.07049 -29.21116 -27.02847 -26.22056 -25.25613 -23.78886 -23.34182 -22.76515 -21.61307 -20.82136 -18.96106 -18.85355 -17.21267 -16.69324 -16.56368 -16.53237 -16.39028 -16.33588 -16.05265 -15.79662 -15.45949 -14.88770 -14.71726 -14.50525 -14.21377 -14.16790 -13.92297 -13.34379 -13.07275 -13.02203 -12.79964 -12.64586 -12.55566 -12.40880 -12.18890 -11.87125 -11.57701 -11.51749 -11.30767 -11.20012 -11.11027 -10.94527 -10.73062 -10.62898 -10.29877 -10.17666 -9.28234 -9.22561 -9.14637 -8.97564 -8.82431 -8.68253 -8.46005 -7.65226 -6.10196 -4.18927 0.73147 0.89897 0.91886 1.20153 2.72745 3.19625 3.25517 3.30351 3.31247 3.34253 3.82564 3.96328 4.06304 4.27696 4.36708 4.50888 4.55712 4.58760 4.63501 4.80231 4.87165 4.95201 4.97905 5.04109 5.12747 5.20207 5.27130 5.47367 5.54458 5.61781 5.68579 5.78037 5.81754 5.89295 5.91757 5.95118 6.19134 6.28919 6.31569 6.34830 6.38962 6.74170 6.78198 6.83741 6.97533 7.02851 7.38212 7.47946 7.67527 7.98167 8.14616 8.45244 8.77444 8.96527 9.47544 10.94997 Molecular weight = 357.15amu Principal moments of inertia in cm(-1) A = 0.019726 B = 0.001806 C = 0.001754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.072763 B =15499.967228 C =15961.666143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.258 3.742 3 H 0.064 0.936 4 C -0.528 4.528 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.900 3.100 9 H -0.286 1.286 10 H -0.277 1.277 11 H -0.277 1.277 12 N -0.584 5.584 13 C 0.073 3.927 14 C 0.544 3.456 15 O -0.548 6.548 16 C -0.122 4.122 17 C -0.095 4.095 18 C -0.134 4.134 19 C -0.079 4.079 20 C -0.116 4.116 21 C 0.105 3.895 22 O -0.303 6.303 23 C 0.165 3.835 24 C -0.221 4.221 25 C -0.050 4.050 26 C -0.196 4.196 27 C 0.139 3.861 28 F -0.135 7.135 29 C -0.192 4.192 30 C -0.040 4.040 31 H 0.094 0.906 32 H 0.030 0.970 33 H 0.012 0.988 34 H 0.264 0.736 35 H 0.057 0.943 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.157 0.843 39 H 0.129 0.871 40 H 0.124 0.876 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.136 0.864 44 H 0.136 0.864 45 H 0.136 0.864 46 H 0.144 0.856 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.575 -5.044 24.323 26.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.159 3.841 3 H 0.082 0.918 4 C -0.566 4.566 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.524 5.524 8 Si 0.728 3.272 9 H -0.211 1.211 10 H -0.202 1.202 11 H -0.202 1.202 12 N -0.314 5.314 13 C -0.070 4.070 14 C 0.331 3.669 15 O -0.428 6.428 16 C -0.125 4.125 17 C -0.113 4.113 18 C -0.152 4.152 19 C -0.098 4.098 20 C -0.116 4.116 21 C 0.031 3.969 22 O -0.216 6.216 23 C 0.118 3.882 24 C -0.240 4.240 25 C -0.068 4.068 26 C -0.215 4.215 27 C 0.119 3.881 28 F -0.113 7.113 29 C -0.211 4.211 30 C -0.059 4.059 31 H 0.113 0.887 32 H 0.050 0.950 33 H 0.032 0.968 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.174 0.826 39 H 0.147 0.853 40 H 0.142 0.858 41 H 0.093 0.907 42 H 0.095 0.905 43 H 0.154 0.846 44 H 0.154 0.846 45 H 0.154 0.846 46 H 0.162 0.838 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 8.336 -4.381 24.015 25.795 hybrid contribution 0.314 -0.515 -0.775 0.982 sum 8.650 -4.896 23.239 25.276 Atomic orbital electron populations 1.22093 0.98101 0.99424 1.00988 1.18992 0.91086 0.94507 0.79563 0.91787 1.21256 1.32067 1.13085 0.90210 0.92305 1.24900 0.94930 0.94986 0.98984 1.69873 1.36160 1.22476 1.23938 0.86531 0.79219 0.79550 0.81935 1.21147 1.20239 1.20219 1.48143 1.48376 1.11659 1.23270 1.22176 1.01556 0.83475 0.99836 1.18208 0.79700 0.86863 0.82108 1.90725 1.62377 1.14536 1.75142 1.20252 1.02247 0.94055 0.95952 1.22533 0.95071 0.93783 0.99930 1.21117 0.99947 1.00223 0.93959 1.21157 0.97728 0.93104 0.97788 1.19269 1.03840 0.93977 0.94499 1.21655 0.88435 1.00567 0.86225 1.86205 1.40063 1.71144 1.24168 1.18649 0.92669 0.91106 0.85747 1.21383 0.96884 1.05306 1.00459 1.20793 0.98788 0.95353 0.91830 1.21046 0.92519 1.05792 1.02167 1.17293 0.86076 0.98429 0.86283 1.91523 1.62420 1.94194 1.63206 1.20295 1.01176 1.06829 0.92813 1.21149 0.93013 1.00562 0.91155 0.88708 0.95049 0.96849 0.92565 0.92508 0.91391 0.90971 0.82612 0.85282 0.85823 0.90719 0.90538 0.84596 0.84629 0.84642 0.83823 0.84792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.53 8.94 37.16 0.33 -3.20 16 2 C 0.26 6.58 2.63 -69.08 -0.18 6.40 16 3 H 0.06 1.90 6.92 -51.93 -0.36 1.54 16 4 C -0.53 -14.05 8.37 -34.44 -0.29 -14.34 16 5 H 0.06 1.52 7.53 -52.49 -0.40 1.13 16 6 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -24.89 11.32 55.43 0.63 -24.26 16 8 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 9 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 12 N -0.58 -12.49 2.75 -176.38 -0.49 -12.97 16 13 C 0.07 1.19 7.92 59.84 0.47 1.67 16 14 C 0.54 11.59 7.52 -12.33 -0.09 11.49 16 15 O -0.55 -13.72 15.88 5.32 0.08 -13.64 16 16 C -0.12 -2.01 5.57 -104.97 -0.58 -2.59 16 17 C -0.10 -1.27 7.61 -39.18 -0.30 -1.57 16 18 C -0.13 -1.43 10.03 -39.64 -0.40 -1.83 16 19 C -0.08 -0.81 9.69 -39.49 -0.38 -1.20 16 20 C -0.12 -1.34 5.50 -104.68 -0.58 -1.92 16 21 C 0.11 0.98 4.86 36.01 0.17 1.15 16 22 O -0.30 -3.34 10.12 -19.42 -0.20 -3.54 16 23 C 0.16 1.63 6.69 -39.22 -0.26 1.37 16 24 C -0.22 -1.74 9.04 -39.42 -0.36 -2.10 16 25 C -0.05 -0.34 10.04 -39.62 -0.40 -0.73 16 26 C -0.20 -1.50 10.02 -39.49 -0.40 -1.90 16 27 C 0.14 1.31 7.30 -39.44 -0.29 1.02 16 28 F -0.13 -1.36 17.27 2.25 0.04 -1.32 16 29 C -0.19 -1.91 9.97 -39.37 -0.39 -2.30 16 30 C -0.04 -0.58 9.24 -39.18 -0.36 -0.95 16 31 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 32 H 0.03 0.68 6.68 -51.93 -0.35 0.34 16 33 H 0.01 0.29 8.14 -51.93 -0.42 -0.14 16 34 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 35 H 0.06 0.86 6.90 -51.93 -0.36 0.51 16 36 H 0.07 0.93 5.21 -51.93 -0.27 0.66 16 37 H 0.07 1.19 6.44 -51.93 -0.33 0.85 16 38 H 0.16 1.97 4.04 -52.49 -0.21 1.76 16 39 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 40 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 41 H 0.07 0.51 7.59 -51.93 -0.39 0.12 16 42 H 0.08 0.64 7.61 -51.93 -0.40 0.25 16 43 H 0.14 0.82 6.30 -52.49 -0.33 0.49 16 44 H 0.14 0.55 8.06 -52.49 -0.42 0.13 16 45 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 46 H 0.14 1.37 8.06 -52.49 -0.42 0.94 16 47 H 0.13 2.03 7.79 -52.49 -0.41 1.62 16 LS Contribution 390.28 15.07 5.88 5.88 Total: -1.00 -32.20 390.28 -9.23 -41.43 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -5.79 Total: 2.54 kcal Atomic # 6 Polarization: -5.50 SS G_CDS: -4.37 Total: -9.87 kcal Atomic # 7 Polarization: -37.37 SS G_CDS: 0.14 Total: -37.23 kcal Atomic # 8 Polarization: -17.06 SS G_CDS: -0.11 Total: -17.18 kcal Atomic # 9 Polarization: -1.36 SS G_CDS: 0.04 Total: -1.32 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.20 -9.23 -41.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071907601.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.337 kcal (2) G-P(sol) polarization free energy of solvation -32.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds