Wall clock time and date at job start Tue Mar 31 2020 05:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47579 * 2 1 4 4 C 1.50707 * 109.46864 * 239.99964 * 2 1 3 5 5 H 1.08000 * 119.99819 * 240.00098 * 4 2 1 6 6 C 1.37874 * 119.99767 * 60.00412 * 4 2 1 7 7 N 1.31518 * 119.99911 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00089 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47100 * 179.97438 * 8 6 4 10 10 H 1.48496 * 109.47095 * 300.00575 * 8 6 4 11 11 H 1.48509 * 109.46542 * 60.00054 * 8 6 4 12 12 N 1.46498 * 109.46913 * 120.00590 * 2 1 3 13 13 C 1.46496 * 120.00385 * 59.99982 * 12 2 1 14 14 C 1.34786 * 119.99900 * 239.99263 * 12 2 1 15 15 O 1.21552 * 119.99545 * 6.99047 * 14 12 2 16 16 C 1.47839 * 120.00051 * 186.98467 * 14 12 2 17 17 C 1.39606 * 120.14649 * 20.30425 * 16 14 12 18 18 C 1.37931 * 119.85380 * 179.78634 * 17 16 14 19 19 C 1.38379 * 120.14445 * 0.48916 * 18 17 16 20 20 C 1.38343 * 120.29390 * 359.74009 * 19 18 17 21 21 C 1.50702 * 119.92660 * 180.02562 * 20 19 18 22 22 O 1.42898 * 109.47173 * 270.02360 * 21 20 19 23 23 C 1.35899 * 117.00044 * 180.02562 * 22 21 20 24 24 C 1.38771 * 120.04244 * 359.72089 * 23 22 21 25 25 C 1.38132 * 119.99036 * 179.74593 * 24 23 22 26 26 C 1.38250 * 120.08304 * 0.53143 * 25 24 23 27 27 C 1.38469 * 120.08279 * 359.74381 * 26 25 24 28 28 F 1.35105 * 119.99810 * 179.97438 * 27 26 25 29 29 C 1.38385 * 120.01080 * 359.97438 * 27 26 25 30 30 C 1.37978 * 120.14650 * 0.02562 * 20 19 18 31 31 H 1.09000 * 109.47176 * 59.99467 * 1 2 3 32 32 H 1.08995 * 109.47579 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.46516 * 299.99929 * 1 2 3 34 34 H 0.97002 * 119.99703 * 180.02562 * 7 6 4 35 35 H 1.08997 * 109.47669 * 85.92450 * 13 12 2 36 36 H 1.09003 * 109.47213 * 205.93270 * 13 12 2 37 37 H 1.09002 * 109.47013 * 325.92214 * 13 12 2 38 38 H 1.07999 * 120.06919 * 359.97438 * 17 16 14 39 39 H 1.07996 * 119.92689 * 180.22763 * 18 17 16 40 40 H 1.08001 * 119.85600 * 179.72034 * 19 18 17 41 41 H 1.09005 * 109.47135 * 30.02295 * 21 20 19 42 42 H 1.08998 * 109.46782 * 150.02012 * 21 20 19 43 43 H 1.07994 * 120.00037 * 0.02562 * 24 23 22 44 44 H 1.08000 * 119.95295 * 180.27580 * 25 24 23 45 45 H 1.07999 * 119.95656 * 179.76595 * 26 25 24 46 46 H 1.07999 * 120.04540 * 180.02562 * 29 27 26 47 47 H 1.07994 * 120.07216 * 179.97438 * 30 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9436 0.8303 -2.6033 8 14 2.3223 -1.1194 -4.0080 9 1 1.8267 -0.4197 -5.2204 10 1 3.8073 -1.1191 -4.0078 11 1 1.8277 -2.5197 -4.0082 12 7 2.0183 -0.6907 1.1961 13 6 1.6644 -2.0933 1.4279 14 6 2.7933 -0.0358 2.0833 15 8 2.9828 1.1584 1.9594 16 6 3.4126 -0.7700 3.2072 17 6 3.5653 -2.1560 3.1399 18 6 4.1480 -2.8344 4.1901 19 6 4.5716 -2.1453 5.3128 20 6 4.4190 -0.7724 5.3879 21 6 4.8839 -0.0302 6.6144 22 8 3.8170 0.0383 7.5626 23 6 4.0720 0.6804 8.7329 24 6 5.3256 1.2281 8.9660 25 6 5.5820 1.8850 10.1538 26 6 4.5945 1.9882 11.1158 27 6 3.3443 1.4380 10.8889 28 9 2.3807 1.5394 11.8305 29 6 3.0816 0.7841 9.6979 30 6 3.8421 -0.0811 4.3424 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3632 0.5139 0.8901 34 1 0.7090 1.1616 -3.4843 35 1 2.3752 -2.7377 0.9107 36 1 1.6943 -2.3037 2.4970 37 1 0.6601 -2.2821 1.0485 38 1 3.2306 -2.6955 2.2662 39 1 4.2700 -3.9061 4.1377 40 1 5.0232 -2.6817 6.1343 41 1 5.7306 -0.5547 7.0573 42 1 5.1872 0.9788 6.3351 43 1 6.0991 1.1447 8.2170 44 1 6.5564 2.3150 10.3327 45 1 4.7984 2.4990 12.0453 46 1 2.1065 0.3551 9.5202 47 1 3.7231 0.9906 4.4025 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071907601.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:30 Heat of formation + Delta-G solvation = -57.528720 kcal Electronic energy + Delta-G solvation = -30168.006142 eV Core-core repulsion = 25809.997011 eV Total energy + Delta-G solvation = -4358.009131 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 357.153 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.98265 -41.57711 -41.06363 -39.48701 -38.14023 -37.28963 -35.08769 -33.49777 -32.29886 -31.79821 -31.02748 -30.59008 -28.25698 -27.34086 -27.28056 -25.12557 -23.98199 -23.49972 -22.72402 -22.22113 -20.39740 -19.62387 -18.58873 -18.09102 -17.77569 -17.41305 -17.21108 -17.08897 -17.03271 -16.99292 -16.59070 -16.28666 -16.14957 -15.66869 -15.37670 -15.01295 -14.73075 -14.65266 -14.49727 -14.30457 -13.94812 -13.79923 -13.56294 -13.48682 -13.30647 -13.01909 -12.98462 -12.76116 -12.71485 -12.69741 -12.43057 -12.22897 -12.14731 -12.02931 -11.93731 -11.76106 -11.20951 -10.79166 -10.52719 -9.98861 -9.92913 -9.87417 -9.38240 -9.33251 -8.15815 -6.33360 -0.12568 0.09572 0.22071 0.27355 1.41856 1.44513 1.52038 1.79559 2.13801 2.25851 2.46582 2.57658 2.89122 3.11947 3.33657 3.56576 3.59131 3.80803 3.87052 3.97667 4.03221 4.08056 4.13637 4.20102 4.26829 4.39068 4.42050 4.45804 4.55003 4.61790 4.68044 4.81476 4.86656 4.94567 4.96936 4.99542 5.00959 5.07943 5.20761 5.30583 5.33584 5.37608 5.42539 5.44609 5.58710 5.63263 5.70044 5.89005 6.00130 6.11741 6.30536 6.72193 6.74064 7.23822 7.41344 8.88703 Molecular weight = 357.15amu Principal moments of inertia in cm(-1) A = 0.019726 B = 0.001806 C = 0.001754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.072763 B =15499.967228 C =15961.666143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.261 3.739 3 H 0.007 0.993 4 C -0.538 4.538 5 H 0.065 0.935 6 C 0.012 3.988 7 N -0.918 5.918 8 Si 0.969 3.031 9 H -0.285 1.285 10 H -0.276 1.276 11 H -0.260 1.260 12 N -0.592 5.592 13 C 0.070 3.930 14 C 0.533 3.467 15 O -0.606 6.606 16 C -0.150 4.150 17 C -0.098 4.098 18 C -0.121 4.121 19 C -0.064 4.064 20 C -0.113 4.113 21 C 0.103 3.897 22 O -0.323 6.323 23 C 0.147 3.853 24 C -0.219 4.219 25 C -0.044 4.044 26 C -0.194 4.194 27 C 0.120 3.880 28 F -0.145 7.145 29 C -0.211 4.211 30 C -0.057 4.057 31 H 0.070 0.930 32 H 0.051 0.949 33 H 0.015 0.985 34 H 0.265 0.735 35 H 0.074 0.926 36 H 0.099 0.901 37 H 0.071 0.929 38 H 0.163 0.837 39 H 0.170 0.830 40 H 0.164 0.836 41 H 0.109 0.891 42 H 0.079 0.921 43 H 0.158 0.842 44 H 0.170 0.830 45 H 0.156 0.844 46 H 0.135 0.865 47 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.019 -8.242 26.093 29.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.160 3.840 3 H 0.025 0.975 4 C -0.577 4.577 5 H 0.083 0.917 6 C -0.187 4.187 7 N -0.557 5.557 8 Si 0.794 3.206 9 H -0.211 1.211 10 H -0.202 1.202 11 H -0.184 1.184 12 N -0.321 5.321 13 C -0.072 4.072 14 C 0.323 3.677 15 O -0.490 6.490 16 C -0.153 4.153 17 C -0.116 4.116 18 C -0.139 4.139 19 C -0.082 4.082 20 C -0.113 4.113 21 C 0.030 3.970 22 O -0.238 6.238 23 C 0.101 3.899 24 C -0.237 4.237 25 C -0.062 4.062 26 C -0.213 4.213 27 C 0.101 3.899 28 F -0.123 7.123 29 C -0.230 4.230 30 C -0.076 4.076 31 H 0.089 0.911 32 H 0.070 0.930 33 H 0.034 0.966 34 H 0.074 0.926 35 H 0.092 0.908 36 H 0.117 0.883 37 H 0.089 0.911 38 H 0.180 0.820 39 H 0.188 0.812 40 H 0.182 0.818 41 H 0.127 0.873 42 H 0.097 0.903 43 H 0.175 0.825 44 H 0.187 0.813 45 H 0.174 0.826 46 H 0.153 0.847 47 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 10.770 -7.626 25.810 28.989 hybrid contribution -0.391 0.508 -1.191 1.353 sum 10.379 -7.118 24.619 27.650 Atomic orbital electron populations 1.21891 0.97162 1.00273 0.99890 1.18593 0.91768 0.92175 0.81497 0.97535 1.21515 1.32148 1.13226 0.90791 0.91670 1.25804 0.95044 0.95666 1.02207 1.70032 1.37219 1.23880 1.24570 0.85440 0.78396 0.78991 0.77772 1.21065 1.20154 1.18441 1.48122 1.48356 1.13536 1.22093 1.22479 1.01818 0.80648 1.02231 1.19083 0.79067 0.86569 0.82984 1.90670 1.64357 1.17216 1.76721 1.19905 1.04985 0.95427 0.94975 1.22600 0.95577 0.92115 1.01279 1.21554 0.97741 1.02047 0.92536 1.21670 0.95712 0.92334 0.98515 1.19509 1.02599 0.94968 0.94222 1.21783 0.88817 1.01098 0.85343 1.86146 1.41115 1.71697 1.24793 1.18789 0.93582 0.92088 0.85405 1.21687 0.96379 1.04376 1.01303 1.21213 0.99872 0.94268 0.90849 1.21371 0.91740 1.04930 1.03220 1.17524 0.86812 0.99447 0.86165 1.91493 1.62977 1.94373 1.63476 1.20371 1.01292 1.07745 0.93608 1.21111 0.94504 0.99874 0.92160 0.91135 0.93037 0.96554 0.92598 0.90808 0.88261 0.91081 0.81996 0.81235 0.81845 0.87277 0.90273 0.82479 0.81254 0.82648 0.84668 0.87016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.66 8.94 71.98 0.64 -6.02 16 2 C 0.26 14.02 2.63 44.25 0.12 14.14 16 3 H 0.01 0.43 6.92 -2.39 -0.02 0.41 16 4 C -0.54 -29.32 8.37 25.60 0.21 -29.11 16 5 H 0.07 3.38 7.53 -2.91 -0.02 3.36 16 6 C 0.01 0.68 5.30 84.65 0.45 1.13 16 7 N -0.92 -53.42 11.32 21.45 0.24 -53.18 16 8 Si 0.97 42.77 29.54 68.60 2.03 44.80 16 9 H -0.29 -12.45 7.11 99.48 0.71 -11.74 16 10 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 11 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 12 N -0.59 -26.22 2.75 -830.22 -2.29 -28.51 16 13 C 0.07 2.22 7.92 127.77 1.01 3.23 16 14 C 0.53 24.07 7.52 86.78 0.65 24.72 16 15 O -0.61 -33.15 15.88 -3.88 -0.06 -33.21 16 16 C -0.15 -5.02 5.57 -20.09 -0.11 -5.13 16 17 C -0.10 -2.39 7.61 22.53 0.17 -2.22 16 18 C -0.12 -2.03 10.03 22.23 0.22 -1.80 16 19 C -0.06 -1.03 9.69 22.33 0.22 -0.81 16 20 C -0.11 -2.39 5.50 -19.90 -0.11 -2.50 16 21 C 0.10 1.68 4.86 71.24 0.35 2.02 16 22 O -0.32 -6.76 10.12 -92.41 -0.94 -7.70 16 23 C 0.15 2.76 6.69 22.50 0.15 2.91 16 24 C -0.22 -2.87 9.04 22.37 0.20 -2.67 16 25 C -0.04 -0.46 10.04 22.25 0.22 -0.24 16 26 C -0.19 -2.57 10.02 22.33 0.22 -2.35 16 27 C 0.12 2.21 7.30 22.36 0.16 2.38 16 28 F -0.14 -2.95 17.27 44.97 0.78 -2.18 16 29 C -0.21 -4.24 9.97 22.41 0.22 -4.02 16 30 C -0.06 -1.72 9.24 22.53 0.21 -1.51 16 31 H 0.07 3.86 6.07 -2.39 -0.01 3.85 16 32 H 0.05 2.29 6.68 -2.39 -0.02 2.28 16 33 H 0.02 0.75 8.14 -2.38 -0.02 0.73 16 34 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 35 H 0.07 2.10 6.90 -2.39 -0.02 2.09 16 36 H 0.10 2.53 5.21 -2.39 -0.01 2.52 16 37 H 0.07 2.26 6.44 -2.39 -0.02 2.25 16 38 H 0.16 3.68 4.04 -2.91 -0.01 3.66 16 39 H 0.17 1.54 8.06 -2.91 -0.02 1.52 16 40 H 0.16 1.41 8.06 -2.91 -0.02 1.39 16 41 H 0.11 1.01 7.59 -2.38 -0.02 0.99 16 42 H 0.08 1.22 7.61 -2.39 -0.02 1.20 16 43 H 0.16 1.32 6.30 -2.91 -0.02 1.30 16 44 H 0.17 0.62 8.06 -2.91 -0.02 0.59 16 45 H 0.16 1.37 8.06 -2.91 -0.02 1.35 16 46 H 0.14 2.76 8.06 -2.91 -0.02 2.74 16 47 H 0.11 3.73 7.79 -2.91 -0.02 3.71 16 Total: -1.00 -77.17 390.28 5.99 -71.18 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: 1.01 Total: 16.65 kcal Atomic # 6 Polarization: -13.07 SS G_CDS: 5.22 Total: -7.86 kcal Atomic # 7 Polarization: -79.64 SS G_CDS: -2.04 Total: -81.68 kcal Atomic # 8 Polarization: -39.91 SS G_CDS: -1.00 Total: -40.91 kcal Atomic # 9 Polarization: -2.95 SS G_CDS: 0.78 Total: -2.18 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Total: -77.17 5.99 -71.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071907601.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.651 kcal (2) G-P(sol) polarization free energy of solvation -77.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds