Wall clock time and date at job start Tue Mar 31 2020 05:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.39866 * 126.04493 * 2 1 4 4 N 1.30835 * 108.20507 * 179.74169 * 3 2 1 5 5 N 1.40077 * 108.20642 * 0.40077 * 4 3 2 6 6 C 1.46505 * 126.04050 * 179.85568 * 5 4 3 7 7 C 1.53510 * 114.17062 * 264.69304 * 6 5 4 8 8 N 1.47480 * 87.93197 * 220.13759 * 7 6 5 9 9 C 1.46903 * 111.00208 * 138.70251 * 8 7 6 10 10 C 1.52994 * 109.46975 * 170.00066 * 9 8 7 11 11 H 1.09004 * 109.46995 * 304.99863 * 10 9 8 12 12 O 1.42902 * 109.47223 * 65.00109 * 10 9 8 13 13 C 1.53002 * 109.46845 * 185.00190 * 10 9 8 14 14 O 1.42904 * 109.46921 * 174.99802 * 13 10 9 15 15 C 1.35679 * 116.99768 * 179.97438 * 14 13 10 16 16 C 1.39312 * 119.81855 * 359.72856 * 15 14 13 17 17 C 1.36437 * 120.18458 * 179.76320 * 16 15 14 18 18 C 1.40836 * 119.80930 * 0.50442 * 17 16 15 19 19 C 1.41209 * 120.17654 * 179.72268 * 18 17 16 20 20 H 1.08004 * 120.00374 * 24.57583 * 19 18 17 21 21 C 1.39889 * 120.00220 * 204.57710 * 19 18 17 22 22 N 1.30882 * 120.00167 * 17.92959 * 21 19 18 23 23 Si 1.86801 * 120.00327 * 197.93495 * 21 19 18 24 24 H 1.48500 * 109.47102 * 89.99329 * 23 21 19 25 25 H 1.48497 * 109.47454 * 209.99567 * 23 21 19 26 26 H 1.48496 * 109.47101 * 329.99662 * 23 21 19 27 27 C 1.40828 * 119.64253 * 359.74905 * 18 17 16 28 28 C 1.36438 * 119.81142 * 359.97438 * 27 18 17 29 29 C 1.47484 * 87.83443 * 27.00899 * 8 7 6 30 30 C 1.34950 * 107.92386 * 359.59464 * 5 4 3 31 31 H 1.08999 * 109.47328 * 270.00409 * 1 2 3 32 32 H 1.09008 * 109.46890 * 30.00087 * 1 2 3 33 33 H 1.08998 * 109.47356 * 149.99727 * 1 2 3 34 34 H 1.08006 * 125.89592 * 359.97438 * 3 2 1 35 35 H 1.09002 * 113.25296 * 37.64067 * 6 5 4 36 36 H 1.08999 * 113.47869 * 105.37010 * 7 6 5 37 37 H 1.09002 * 113.52998 * 334.91118 * 7 6 5 38 38 H 1.09000 * 109.46745 * 49.99618 * 9 8 7 39 39 H 1.08996 * 109.46925 * 289.99813 * 9 8 7 40 40 H 0.96694 * 113.99885 * 59.99900 * 12 10 9 41 41 H 1.08995 * 109.46962 * 294.99698 * 13 10 9 42 42 H 1.08999 * 109.47380 * 54.99916 * 13 10 9 43 43 H 1.08004 * 119.90477 * 0.02562 * 16 15 14 44 44 H 1.08001 * 120.09564 * 180.25585 * 17 16 15 45 45 H 0.97000 * 120.00577 * 180.02562 * 22 21 19 46 46 H 1.07997 * 120.09442 * 179.97438 * 27 18 17 47 47 H 1.08004 * 119.90633 * 179.97438 * 28 27 18 48 48 H 1.08998 * 113.47585 * 87.76043 * 29 8 7 49 49 H 1.09002 * 113.47373 * 218.22296 * 29 8 7 50 50 H 1.08004 * 126.12566 * 180.22250 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3299 1.1309 0.0000 4 7 3.5754 0.7301 0.0056 5 7 3.5844 -0.6706 0.0000 6 6 4.7745 -1.5250 0.0005 7 6 5.2141 -1.9912 -1.3944 8 7 5.5054 -3.3105 -0.8031 9 6 5.0655 -4.3945 -1.6917 10 6 5.6012 -5.7297 -1.1712 11 1 6.6841 -5.6692 -1.0626 12 8 5.0104 -6.0178 0.0977 13 6 5.2493 -6.8413 -2.1619 14 8 5.8485 -8.0666 -1.7354 15 6 5.6323 -9.1600 -2.5091 16 6 4.8502 -9.0527 -3.6570 17 6 4.6319 -10.1463 -4.4430 18 6 5.1909 -11.3885 -4.0853 19 6 4.9651 -12.5266 -4.8900 20 1 4.7274 -12.4093 -5.9370 21 6 5.0492 -13.8063 -4.3311 22 7 4.9854 -13.9589 -3.0328 23 14 5.2528 -15.2974 -5.4378 24 1 6.6984 -15.5644 -5.6477 25 1 4.6189 -16.4784 -4.7988 26 1 4.6029 -15.0346 -6.7469 27 6 5.9759 -11.4894 -2.9204 28 6 6.1892 -10.3849 -2.1484 29 6 4.4828 -3.0163 0.2180 30 6 2.3031 -1.0942 0.0000 31 1 -0.3634 0.0001 1.0276 32 1 -0.3633 0.8900 -0.5139 33 1 -0.3634 -0.8899 -0.5139 34 1 1.9951 2.1578 -0.0004 35 1 5.5846 -1.1342 0.6164 36 1 6.1004 -1.4763 -1.7651 37 1 4.4030 -2.0111 -2.1223 38 1 5.4467 -4.2171 -2.6974 39 1 3.9762 -4.4247 -1.7162 40 1 4.0462 -6.0861 0.0762 41 1 4.1668 -6.9615 -2.2036 42 1 5.6242 -6.5786 -3.1511 43 1 4.4191 -8.1002 -3.9277 44 1 4.0288 -10.0606 -5.3348 45 1 5.0441 -14.8462 -2.6452 46 1 6.4077 -12.4385 -2.6390 47 1 6.7906 -10.4607 -1.2545 48 1 3.4758 -3.3096 -0.0787 49 1 4.7493 -3.3702 1.2140 50 1 1.9723 -2.1223 -0.0002 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072253997.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:50 Heat of formation + Delta-G solvation = 52.903308 kcal Electronic energy + Delta-G solvation = -30075.199428 eV Core-core repulsion = 25877.732045 eV Total energy + Delta-G solvation = -4197.467382 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 357.184 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.95188 -40.38436 -38.97746 -37.36182 -36.04489 -33.54556 -33.34853 -32.11328 -31.18099 -29.86470 -29.12636 -28.37542 -26.93737 -26.46042 -24.98687 -24.22412 -22.37008 -21.76767 -20.86828 -20.67410 -20.61529 -19.89894 -17.86614 -17.38819 -17.01096 -16.74201 -16.39478 -16.10357 -15.70302 -15.22883 -15.16619 -14.88740 -14.38180 -14.13653 -13.99251 -13.92032 -13.78175 -13.42827 -13.35774 -13.14403 -13.06581 -12.87741 -12.35239 -12.30540 -12.26182 -12.17959 -11.82362 -11.64985 -11.43926 -11.42792 -11.18097 -11.04003 -10.90922 -10.84595 -10.64026 -10.10659 -10.00069 -9.85220 -9.80458 -9.51171 -9.36753 -9.05590 -8.69322 -7.68009 -7.06963 -6.75143 -4.28754 1.47997 1.98880 2.42731 2.74926 2.91489 3.06871 3.10004 3.18897 3.24712 3.58780 3.81946 3.93012 4.16770 4.22492 4.29427 4.47919 4.53839 4.55264 4.59055 4.69268 4.83955 4.91821 4.99296 5.08305 5.10274 5.17077 5.19521 5.25246 5.32088 5.36253 5.47234 5.53404 5.63149 5.64649 5.66182 5.78571 5.95415 6.00949 6.19219 6.29923 6.34207 6.63045 6.69182 6.94253 7.07726 7.15328 7.33799 7.42301 7.51827 7.55823 7.75183 7.97470 8.17190 8.41436 8.61973 8.86887 8.95309 10.19302 Molecular weight = 357.18amu Principal moments of inertia in cm(-1) A = 0.023815 B = 0.001446 C = 0.001408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.455858 B =19361.826780 C =19882.582429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.241 4.241 3 C 0.047 3.953 4 N -0.293 5.293 5 N -0.361 5.361 6 C 0.132 3.868 7 C -0.012 4.012 8 N -0.450 5.450 9 C -0.007 4.007 10 C 0.120 3.880 11 H 0.115 0.885 12 O -0.545 6.545 13 C 0.039 3.961 14 O -0.316 6.316 15 C -0.010 4.010 16 C -0.168 4.168 17 C -0.199 4.199 18 C 0.088 3.912 19 C -0.464 4.464 20 H 0.077 0.923 21 C 0.075 3.925 22 N -0.798 5.798 23 Si 0.908 3.092 24 H -0.268 1.268 25 H -0.278 1.278 26 H -0.263 1.263 27 C -0.133 4.133 28 C -0.118 4.118 29 C 0.001 3.999 30 C 0.051 3.949 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.182 0.818 35 H 0.136 0.864 36 H 0.101 0.899 37 H 0.077 0.923 38 H 0.091 0.909 39 H 0.054 0.946 40 H 0.367 0.633 41 H 0.051 0.949 42 H 0.058 0.942 43 H 0.091 0.909 44 H 0.094 0.906 45 H 0.280 0.720 46 H 0.126 0.874 47 H 0.098 0.902 48 H 0.079 0.921 49 H 0.108 0.892 50 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.828 23.995 5.628 25.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.252 4.252 3 C -0.139 4.139 4 N -0.113 5.113 5 N -0.143 5.143 6 C 0.029 3.971 7 C -0.142 4.142 8 N -0.173 5.173 9 C -0.136 4.136 10 C 0.060 3.940 11 H 0.133 0.867 12 O -0.349 6.349 13 C -0.039 4.039 14 O -0.232 6.232 15 C -0.054 4.054 16 C -0.187 4.187 17 C -0.219 4.219 18 C 0.086 3.914 19 C -0.494 4.494 20 H 0.095 0.905 21 C -0.142 4.142 22 N -0.424 5.424 23 Si 0.733 3.267 24 H -0.193 1.193 25 H -0.204 1.204 26 H -0.187 1.187 27 C -0.153 4.153 28 C -0.137 4.137 29 C -0.129 4.129 30 C -0.094 4.094 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.199 0.801 35 H 0.153 0.847 36 H 0.119 0.881 37 H 0.095 0.905 38 H 0.109 0.891 39 H 0.072 0.928 40 H 0.213 0.787 41 H 0.069 0.931 42 H 0.076 0.924 43 H 0.109 0.891 44 H 0.112 0.888 45 H 0.091 0.909 46 H 0.144 0.856 47 H 0.116 0.884 48 H 0.097 0.903 49 H 0.127 0.873 50 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -3.054 23.873 6.343 24.889 hybrid contribution -2.431 -0.838 -1.317 2.889 sum -5.485 23.035 5.026 24.206 Atomic orbital electron populations 1.20061 0.89212 1.02219 1.01634 1.20165 0.97195 0.91822 1.16047 1.23837 0.89949 0.99873 1.00239 1.77365 1.21282 0.88750 1.23866 1.48552 1.04889 1.04494 1.56391 1.23021 0.86449 0.88511 0.99133 1.24408 1.02111 0.91564 0.96093 1.68874 1.38909 1.01020 1.08458 1.23346 0.99098 0.93234 0.97944 1.21839 0.99967 0.88993 0.83154 0.86708 1.86676 1.24391 1.93698 1.30104 1.23091 0.97568 0.85558 0.97670 1.85892 1.71750 1.15275 1.50237 1.18615 1.06134 0.86436 0.94174 1.20380 1.03225 0.98176 0.96912 1.20548 1.05878 0.93808 1.01633 1.17602 0.89604 0.91979 0.92247 1.19471 1.42786 0.90031 0.97088 0.90534 1.25881 0.92299 1.00809 0.95207 1.69832 1.35567 1.25234 1.11769 0.86320 0.79447 0.80036 0.80946 1.19294 1.20362 1.18718 1.20986 1.00424 0.96885 0.96959 1.19845 1.02722 0.90624 1.00501 1.24373 0.96071 0.91598 1.00823 1.22267 0.84281 1.00140 1.02739 0.92050 0.91827 0.92133 0.80101 0.84675 0.88094 0.90507 0.89094 0.92778 0.78716 0.93110 0.92424 0.89050 0.88786 0.90875 0.85643 0.88405 0.90316 0.87342 0.81269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.39 10.37 36.00 0.37 -0.02 16 2 C -0.24 -1.85 6.10 -105.06 -0.64 -2.50 16 3 C 0.05 0.40 11.96 -17.37 -0.21 0.19 16 4 N -0.29 -3.06 12.58 30.62 0.39 -2.67 16 5 N -0.36 -3.18 3.83 -54.60 -0.21 -3.39 16 6 C 0.13 0.98 5.39 -67.72 -0.36 0.61 16 7 C -0.01 -0.09 7.49 -7.55 -0.06 -0.14 16 8 N -0.45 -3.71 6.31 -244.66 -1.54 -5.25 16 9 C -0.01 -0.06 4.53 -3.83 -0.02 -0.08 16 10 C 0.12 1.40 3.49 -26.73 -0.09 1.30 16 11 H 0.12 1.50 8.14 -51.93 -0.42 1.08 16 12 O -0.54 -6.69 12.64 -40.08 -0.51 -7.19 16 13 C 0.04 0.56 4.37 37.16 0.16 0.72 16 14 O -0.32 -6.33 10.09 -23.58 -0.24 -6.57 16 15 C -0.01 -0.24 6.71 -38.78 -0.26 -0.50 16 16 C -0.17 -3.72 8.96 -39.83 -0.36 -4.08 16 17 C -0.20 -4.83 9.74 -39.25 -0.38 -5.21 16 18 C 0.09 2.34 5.57 -106.81 -0.60 1.74 16 19 C -0.46 -12.23 9.04 -37.84 -0.34 -12.57 16 20 H 0.08 1.94 7.91 -52.48 -0.41 1.52 16 21 C 0.08 1.87 5.13 -17.34 -0.09 1.78 16 22 N -0.80 -20.55 10.96 55.54 0.61 -19.95 16 23 Si 0.91 18.56 29.60 -169.99 -5.03 13.53 16 24 H -0.27 -5.42 7.11 56.52 0.40 -5.01 16 25 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 26 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 27 C -0.13 -3.47 8.64 -39.25 -0.34 -3.81 16 28 C -0.12 -2.86 9.92 -39.83 -0.40 -3.25 16 29 C 0.00 0.01 6.43 -7.55 -0.05 -0.04 16 30 C 0.05 0.39 10.61 -17.22 -0.18 0.21 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.28 8.14 -51.92 -0.42 -0.14 16 33 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 34 H 0.18 1.00 8.06 -52.48 -0.42 0.58 16 35 H 0.14 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.08 0.55 7.91 -51.93 -0.41 0.14 16 38 H 0.09 0.72 8.08 -51.93 -0.42 0.30 16 39 H 0.05 0.38 7.30 -51.93 -0.38 0.00 16 40 H 0.37 3.26 9.04 45.56 0.41 3.67 16 41 H 0.05 0.69 7.63 -51.93 -0.40 0.30 16 42 H 0.06 0.79 7.66 -51.93 -0.40 0.39 16 43 H 0.09 1.72 6.27 -52.48 -0.33 1.39 16 44 H 0.09 2.13 8.06 -52.49 -0.42 1.71 16 45 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 46 H 0.13 3.34 6.16 -52.49 -0.32 3.02 16 47 H 0.10 2.21 8.06 -52.48 -0.42 1.78 16 48 H 0.08 0.44 5.67 -51.93 -0.29 0.15 16 49 H 0.11 0.79 8.14 -51.93 -0.42 0.36 16 50 H 0.17 0.88 6.74 -52.48 -0.35 0.52 16 LS Contribution 411.62 15.07 6.20 6.20 Total: -1.00 -31.56 411.62 -10.84 -42.39 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: -6.67 Total: 8.53 kcal Atomic # 6 Polarization: -21.79 SS G_CDS: -3.84 Total: -25.63 kcal Atomic # 7 Polarization: -30.50 SS G_CDS: -0.76 Total: -31.26 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: -0.74 Total: -13.76 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -5.03 Total: 13.53 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -31.56 -10.84 -42.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072253997.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.295 kcal (2) G-P(sol) polarization free energy of solvation -31.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds