Wall clock time and date at job start Tue Mar 31 2020 05:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.39866 * 126.04493 * 2 1 4 4 N 1.30835 * 108.20507 * 179.74169 * 3 2 1 5 5 N 1.40077 * 108.20642 * 0.40077 * 4 3 2 6 6 C 1.46505 * 126.04050 * 179.85568 * 5 4 3 7 7 C 1.53510 * 114.17062 * 264.69304 * 6 5 4 8 8 N 1.47480 * 87.93197 * 220.13759 * 7 6 5 9 9 C 1.46903 * 111.00208 * 138.70251 * 8 7 6 10 10 C 1.52994 * 109.46975 * 170.00066 * 9 8 7 11 11 H 1.09004 * 109.46995 * 304.99863 * 10 9 8 12 12 O 1.42902 * 109.47223 * 65.00109 * 10 9 8 13 13 C 1.53002 * 109.46845 * 185.00190 * 10 9 8 14 14 O 1.42904 * 109.46921 * 174.99802 * 13 10 9 15 15 C 1.35679 * 116.99768 * 179.97438 * 14 13 10 16 16 C 1.39312 * 119.81855 * 359.72856 * 15 14 13 17 17 C 1.36437 * 120.18458 * 179.76320 * 16 15 14 18 18 C 1.40836 * 119.80930 * 0.50442 * 17 16 15 19 19 C 1.41209 * 120.17654 * 179.72268 * 18 17 16 20 20 H 1.08004 * 120.00374 * 24.57583 * 19 18 17 21 21 C 1.39889 * 120.00220 * 204.57710 * 19 18 17 22 22 N 1.30882 * 120.00167 * 17.92959 * 21 19 18 23 23 Si 1.86801 * 120.00327 * 197.93495 * 21 19 18 24 24 H 1.48500 * 109.47102 * 89.99329 * 23 21 19 25 25 H 1.48497 * 109.47454 * 209.99567 * 23 21 19 26 26 H 1.48496 * 109.47101 * 329.99662 * 23 21 19 27 27 C 1.40828 * 119.64253 * 359.74905 * 18 17 16 28 28 C 1.36438 * 119.81142 * 359.97438 * 27 18 17 29 29 C 1.47484 * 87.83443 * 27.00899 * 8 7 6 30 30 C 1.34950 * 107.92386 * 359.59464 * 5 4 3 31 31 H 1.08999 * 109.47328 * 270.00409 * 1 2 3 32 32 H 1.09008 * 109.46890 * 30.00087 * 1 2 3 33 33 H 1.08998 * 109.47356 * 149.99727 * 1 2 3 34 34 H 1.08006 * 125.89592 * 359.97438 * 3 2 1 35 35 H 1.09002 * 113.25296 * 37.64067 * 6 5 4 36 36 H 1.08999 * 113.47869 * 105.37010 * 7 6 5 37 37 H 1.09002 * 113.52998 * 334.91118 * 7 6 5 38 38 H 1.09000 * 109.46745 * 49.99618 * 9 8 7 39 39 H 1.08996 * 109.46925 * 289.99813 * 9 8 7 40 40 H 0.96694 * 113.99885 * 59.99900 * 12 10 9 41 41 H 1.08995 * 109.46962 * 294.99698 * 13 10 9 42 42 H 1.08999 * 109.47380 * 54.99916 * 13 10 9 43 43 H 1.08004 * 119.90477 * 0.02562 * 16 15 14 44 44 H 1.08001 * 120.09564 * 180.25585 * 17 16 15 45 45 H 0.97000 * 120.00577 * 180.02562 * 22 21 19 46 46 H 1.07997 * 120.09442 * 179.97438 * 27 18 17 47 47 H 1.08004 * 119.90633 * 179.97438 * 28 27 18 48 48 H 1.08998 * 113.47585 * 87.76043 * 29 8 7 49 49 H 1.09002 * 113.47373 * 218.22296 * 29 8 7 50 50 H 1.08004 * 126.12566 * 180.22250 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3299 1.1309 0.0000 4 7 3.5754 0.7301 0.0056 5 7 3.5844 -0.6706 0.0000 6 6 4.7745 -1.5250 0.0005 7 6 5.2141 -1.9912 -1.3944 8 7 5.5054 -3.3105 -0.8031 9 6 5.0655 -4.3945 -1.6917 10 6 5.6012 -5.7297 -1.1712 11 1 6.6841 -5.6692 -1.0626 12 8 5.0104 -6.0178 0.0977 13 6 5.2493 -6.8413 -2.1619 14 8 5.8485 -8.0666 -1.7354 15 6 5.6323 -9.1600 -2.5091 16 6 4.8502 -9.0527 -3.6570 17 6 4.6319 -10.1463 -4.4430 18 6 5.1909 -11.3885 -4.0853 19 6 4.9651 -12.5266 -4.8900 20 1 4.7274 -12.4093 -5.9370 21 6 5.0492 -13.8063 -4.3311 22 7 4.9854 -13.9589 -3.0328 23 14 5.2528 -15.2974 -5.4378 24 1 6.6984 -15.5644 -5.6477 25 1 4.6189 -16.4784 -4.7988 26 1 4.6029 -15.0346 -6.7469 27 6 5.9759 -11.4894 -2.9204 28 6 6.1892 -10.3849 -2.1484 29 6 4.4828 -3.0163 0.2180 30 6 2.3031 -1.0942 0.0000 31 1 -0.3634 0.0001 1.0276 32 1 -0.3633 0.8900 -0.5139 33 1 -0.3634 -0.8899 -0.5139 34 1 1.9951 2.1578 -0.0004 35 1 5.5846 -1.1342 0.6164 36 1 6.1004 -1.4763 -1.7651 37 1 4.4030 -2.0111 -2.1223 38 1 5.4467 -4.2171 -2.6974 39 1 3.9762 -4.4247 -1.7162 40 1 4.0462 -6.0861 0.0762 41 1 4.1668 -6.9615 -2.2036 42 1 5.6242 -6.5786 -3.1511 43 1 4.4191 -8.1002 -3.9277 44 1 4.0288 -10.0606 -5.3348 45 1 5.0441 -14.8462 -2.6452 46 1 6.4077 -12.4385 -2.6390 47 1 6.7906 -10.4607 -1.2545 48 1 3.4758 -3.3096 -0.0787 49 1 4.7493 -3.3702 1.2140 50 1 1.9723 -2.1223 -0.0002 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072253997.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:48 Heat of formation + Delta-G solvation = 31.172118 kcal Electronic energy + Delta-G solvation = -30076.141763 eV Core-core repulsion = 25877.732045 eV Total energy + Delta-G solvation = -4198.409718 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 357.184 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.53085 -41.05010 -40.50145 -38.66786 -37.48307 -35.18467 -34.14757 -32.74379 -32.10463 -31.51377 -30.91270 -29.30635 -27.55665 -27.07846 -26.60078 -25.21165 -23.41368 -22.63645 -22.30224 -22.22943 -21.35003 -20.47254 -19.25987 -18.85170 -18.20745 -17.55721 -17.38416 -17.04080 -16.92162 -16.45414 -15.84380 -15.78815 -15.69085 -15.67781 -15.05029 -14.87512 -14.64217 -14.44044 -14.09609 -14.03350 -13.92694 -13.84477 -13.69995 -13.57350 -13.50162 -13.11340 -12.92493 -12.81086 -12.69929 -12.61144 -12.39644 -12.24728 -12.03584 -11.89398 -11.70139 -11.59017 -11.49090 -11.22083 -10.96504 -10.87889 -10.42048 -10.10855 -9.56708 -9.24917 -8.93116 -8.59910 -6.23303 0.90247 0.94476 1.02191 1.39788 1.42979 1.52579 1.52742 1.85953 2.22429 2.35052 2.72207 2.91622 3.05816 3.43486 3.54916 3.69743 3.73752 3.77093 3.89490 3.97624 4.00917 4.07955 4.18088 4.22131 4.28599 4.35539 4.45211 4.46502 4.49508 4.57173 4.60143 4.67491 4.75630 4.85981 4.92923 4.96863 5.00677 5.06387 5.13243 5.21484 5.26678 5.28035 5.31711 5.58283 5.63839 5.74934 5.76391 5.87719 6.05450 6.10429 6.25952 6.56214 6.74388 6.78095 6.83064 6.94750 7.09996 8.36589 Molecular weight = 357.18amu Principal moments of inertia in cm(-1) A = 0.023815 B = 0.001446 C = 0.001408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.455858 B =19361.826780 C =19882.582429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.252 4.252 3 C 0.040 3.960 4 N -0.334 5.334 5 N -0.367 5.367 6 C 0.130 3.870 7 C -0.004 4.004 8 N -0.467 5.467 9 C 0.002 3.998 10 C 0.131 3.869 11 H 0.096 0.904 12 O -0.562 6.562 13 C 0.029 3.971 14 O -0.331 6.331 15 C 0.001 3.999 16 C -0.164 4.164 17 C -0.207 4.207 18 C 0.053 3.947 19 C -0.499 4.499 20 H 0.076 0.924 21 C 0.034 3.966 22 N -0.831 5.831 23 Si 0.982 3.018 24 H -0.264 1.264 25 H -0.269 1.269 26 H -0.258 1.258 27 C -0.152 4.152 28 C -0.135 4.135 29 C 0.009 3.991 30 C 0.047 3.953 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.201 0.799 35 H 0.129 0.871 36 H 0.099 0.901 37 H 0.082 0.918 38 H 0.098 0.902 39 H 0.076 0.924 40 H 0.382 0.618 41 H 0.066 0.934 42 H 0.070 0.930 43 H 0.131 0.869 44 H 0.106 0.894 45 H 0.287 0.713 46 H 0.109 0.891 47 H 0.105 0.895 48 H 0.097 0.903 49 H 0.103 0.897 50 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.254 25.047 4.981 26.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.263 4.263 3 C -0.146 4.146 4 N -0.154 5.154 5 N -0.149 5.149 6 C 0.027 3.973 7 C -0.134 4.134 8 N -0.189 5.189 9 C -0.127 4.127 10 C 0.071 3.929 11 H 0.114 0.886 12 O -0.368 6.368 13 C -0.047 4.047 14 O -0.247 6.247 15 C -0.043 4.043 16 C -0.183 4.183 17 C -0.227 4.227 18 C 0.051 3.949 19 C -0.529 4.529 20 H 0.095 0.905 21 C -0.180 4.180 22 N -0.458 5.458 23 Si 0.803 3.197 24 H -0.189 1.189 25 H -0.194 1.194 26 H -0.181 1.181 27 C -0.172 4.172 28 C -0.154 4.154 29 C -0.120 4.120 30 C -0.099 4.099 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.218 0.782 35 H 0.147 0.853 36 H 0.118 0.882 37 H 0.100 0.900 38 H 0.117 0.883 39 H 0.094 0.906 40 H 0.230 0.770 41 H 0.084 0.916 42 H 0.088 0.912 43 H 0.149 0.851 44 H 0.124 0.876 45 H 0.098 0.902 46 H 0.126 0.874 47 H 0.123 0.877 48 H 0.115 0.885 49 H 0.121 0.879 50 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -4.493 24.960 5.704 25.995 hybrid contribution -2.008 -0.957 -1.004 2.441 sum -6.501 24.003 4.700 25.308 Atomic orbital electron populations 1.20092 0.87640 1.02979 1.02122 1.20529 0.98386 0.91590 1.15817 1.24295 0.89658 1.01222 0.99389 1.77309 1.22576 0.89926 1.25638 1.48639 1.05540 1.04112 1.56619 1.23003 0.86242 0.88757 0.99300 1.24346 1.02176 0.90838 0.95991 1.68830 1.39800 1.01324 1.08965 1.23228 1.00221 0.91245 0.97984 1.21697 0.99162 0.89639 0.82434 0.88634 1.86646 1.25931 1.93827 1.30431 1.23510 0.98265 0.83775 0.99179 1.85886 1.72384 1.16250 1.50158 1.18680 1.04608 0.86906 0.94109 1.20697 1.02433 0.99204 0.95952 1.20806 1.05750 0.93738 1.02375 1.17962 0.90638 0.93326 0.92934 1.19721 1.44775 0.91180 0.97251 0.90546 1.26730 0.91306 1.03424 0.96562 1.69890 1.36186 1.26334 1.13424 0.85208 0.79450 0.76157 0.78913 1.18855 1.19402 1.18142 1.20892 1.01505 0.96932 0.97873 1.20008 1.03359 0.91257 1.00749 1.24369 0.96601 0.90795 1.00280 1.22742 0.83824 1.01351 1.01954 0.91636 0.91093 0.91381 0.78186 0.85323 0.88230 0.90007 0.88321 0.90634 0.76953 0.91555 0.91229 0.85150 0.87561 0.90224 0.87354 0.87680 0.88521 0.87877 0.78884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.60 10.37 71.23 0.74 0.14 16 2 C -0.25 -3.44 6.10 -20.15 -0.12 -3.56 16 3 C 0.04 0.63 11.96 85.24 1.02 1.65 16 4 N -0.33 -6.78 12.58 -57.02 -0.72 -7.50 16 5 N -0.37 -5.99 3.83 -326.64 -1.25 -7.24 16 6 C 0.13 1.77 5.39 45.44 0.24 2.01 16 7 C 0.00 -0.05 7.49 83.57 0.63 0.58 16 8 N -0.47 -6.70 6.31 -927.95 -5.85 -12.55 16 9 C 0.00 0.03 4.53 86.30 0.39 0.42 16 10 C 0.13 2.74 3.49 30.59 0.11 2.84 16 11 H 0.10 2.39 8.14 -2.38 -0.02 2.37 16 12 O -0.56 -12.57 12.64 -144.35 -1.83 -14.39 16 13 C 0.03 0.76 4.37 71.98 0.31 1.07 16 14 O -0.33 -12.72 10.09 -85.34 -0.86 -13.58 16 15 C 0.00 0.04 6.71 22.79 0.15 0.19 16 16 C -0.16 -6.97 8.96 22.11 0.20 -6.77 16 17 C -0.21 -9.95 9.74 22.48 0.22 -9.73 16 18 C 0.05 2.90 5.57 -21.28 -0.12 2.78 16 19 C -0.50 -26.91 9.04 23.40 0.21 -26.70 16 20 H 0.08 3.95 7.91 -2.91 -0.02 3.92 16 21 C 0.03 1.70 5.13 85.23 0.44 2.14 16 22 N -0.83 -43.91 10.96 21.82 0.24 -43.67 16 23 Si 0.98 38.26 29.60 68.60 2.03 40.29 16 24 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 25 H -0.27 -10.00 7.11 99.48 0.71 -9.29 16 26 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 27 C -0.15 -8.20 8.64 22.48 0.19 -8.00 16 28 C -0.13 -6.63 9.92 22.11 0.22 -6.41 16 29 C 0.01 0.11 6.43 83.57 0.54 0.64 16 30 C 0.05 0.62 10.61 83.54 0.89 1.50 16 31 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.07 0.49 8.14 -2.38 -0.02 0.47 16 33 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.20 2.00 8.06 -2.91 -0.02 1.97 16 35 H 0.13 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.08 0.97 7.91 -2.39 -0.02 0.95 16 38 H 0.10 1.23 8.08 -2.39 -0.02 1.21 16 39 H 0.08 0.73 7.30 -2.39 -0.02 0.71 16 40 H 0.38 5.70 9.04 -74.06 -0.67 5.03 16 41 H 0.07 1.55 7.63 -2.39 -0.02 1.53 16 42 H 0.07 1.67 7.66 -2.39 -0.02 1.66 16 43 H 0.13 4.42 6.27 -2.91 -0.02 4.40 16 44 H 0.11 4.72 8.06 -2.91 -0.02 4.70 16 45 H 0.29 13.72 8.30 -92.71 -0.77 12.95 16 46 H 0.11 6.07 6.16 -2.91 -0.02 6.05 16 47 H 0.11 4.84 8.06 -2.91 -0.02 4.82 16 48 H 0.10 0.75 5.67 -2.39 -0.01 0.73 16 49 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 50 H 0.19 1.39 6.74 -2.91 -0.02 1.37 16 Total: -1.00 -69.54 411.62 -1.69 -71.23 By element: Atomic # 1 Polarization: 32.32 SS G_CDS: 0.29 Total: 32.61 kcal Atomic # 6 Polarization: -51.45 SS G_CDS: 6.26 Total: -45.20 kcal Atomic # 7 Polarization: -63.38 SS G_CDS: -7.58 Total: -70.96 kcal Atomic # 8 Polarization: -25.28 SS G_CDS: -2.69 Total: -27.97 kcal Atomic # 14 Polarization: 38.26 SS G_CDS: 2.03 Total: 40.29 kcal Total: -69.54 -1.69 -71.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072253997.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.403 kcal (2) G-P(sol) polarization free energy of solvation -69.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds