Wall clock time and date at job start Tue Mar 31 2020 05:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38288 * 119.97768 * 2 1 4 4 C 1.38241 * 120.11576 * 180.02562 * 3 2 1 5 5 C 1.38168 * 120.05323 * 359.68864 * 4 3 2 6 6 C 1.38709 * 119.94310 * 0.60944 * 5 4 3 7 7 O 1.35905 * 120.05491 * 179.67607 * 6 5 4 8 8 C 1.42900 * 117.00065 * 359.73478 * 7 6 5 9 9 C 1.52997 * 109.47040 * 179.97438 * 8 7 6 10 10 C 1.50704 * 109.46971 * 179.97438 * 9 8 7 11 11 O 1.21297 * 119.99886 * 0.02562 * 10 9 8 12 12 N 1.34779 * 120.00092 * 179.97438 * 10 9 8 13 13 C 1.40151 * 120.00099 * 180.02562 * 12 10 9 14 14 C 1.40416 * 125.97476 * 0.02562 * 13 12 10 15 15 C 1.35237 * 107.86796 * 179.97438 * 14 13 12 16 16 N 1.34970 * 107.85941 * 0.26441 * 15 14 13 17 17 C 1.46504 * 125.96940 * 179.73198 * 16 15 14 18 18 C 1.53002 * 109.46664 * 125.00133 * 17 16 15 19 19 C 1.50704 * 109.46903 * 179.97438 * 18 17 16 20 20 H 1.08001 * 119.99719 * 0.02562 * 19 18 17 21 21 C 1.37877 * 119.99606 * 179.97438 * 19 18 17 22 22 N 1.31516 * 120.00656 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99768 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46796 * 90.00264 * 23 21 19 25 25 H 1.48495 * 109.47239 * 210.00381 * 23 21 19 26 26 H 1.48504 * 109.46932 * 330.00583 * 23 21 19 27 27 N 1.31213 * 125.97528 * 180.02562 * 13 12 10 28 28 C 1.38125 * 119.96885 * 180.02562 * 2 1 3 29 29 C 1.50699 * 120.02948 * 0.02562 * 28 2 1 30 30 H 1.09002 * 109.47392 * 269.97472 * 1 2 3 31 31 H 1.09006 * 109.47108 * 29.97449 * 1 2 3 32 32 H 1.09005 * 109.47321 * 149.97141 * 1 2 3 33 33 H 1.07998 * 119.93836 * 0.02562 * 3 2 1 34 34 H 1.08004 * 119.97198 * 179.97438 * 4 3 2 35 35 H 1.07999 * 120.02696 * 180.29562 * 5 4 3 36 36 H 1.08999 * 109.47331 * 59.99404 * 8 7 6 37 37 H 1.09004 * 109.46740 * 299.99298 * 8 7 6 38 38 H 1.08999 * 109.47179 * 59.99759 * 9 8 7 39 39 H 1.08996 * 109.47294 * 299.99775 * 9 8 7 40 40 H 0.96994 * 119.99525 * 0.02562 * 12 10 9 41 41 H 1.08000 * 126.06023 * 359.97438 * 14 13 12 42 42 H 1.08002 * 126.06518 * 179.97438 * 15 14 13 43 43 H 1.08998 * 109.46990 * 244.99353 * 17 16 15 44 44 H 1.08992 * 109.47218 * 5.00271 * 17 16 15 45 45 H 1.08996 * 109.47054 * 299.99799 * 18 17 16 46 46 H 1.09002 * 109.47229 * 60.00105 * 18 17 16 47 47 H 0.96992 * 119.99962 * 179.97438 * 22 21 19 48 48 H 1.08998 * 109.47077 * 269.98051 * 29 28 2 49 49 H 1.08998 * 109.46701 * 29.98603 * 29 28 2 50 50 H 1.09002 * 109.46979 * 149.97919 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5803 1.2012 -0.0005 5 6 4.2751 0.0070 0.0054 6 6 3.5845 -1.1959 -0.0008 7 8 4.2657 -2.3719 -0.0016 8 6 5.6926 -2.2951 -0.0017 9 6 6.2794 -3.7081 -0.0020 10 6 7.7842 -3.6271 -0.0027 11 8 8.3333 -2.5455 -0.0025 12 7 8.5199 -4.7564 -0.0026 13 6 9.9194 -4.6810 -0.0027 14 6 10.6820 -3.5020 -0.0025 15 6 11.9881 -3.8526 -0.0021 16 7 12.0548 -5.2006 -0.0081 17 6 13.2816 -6.0014 -0.0154 18 6 13.2601 -6.9780 1.1622 19 6 14.5218 -7.8022 1.1544 20 1 15.2648 -7.6448 0.3865 21 6 14.7279 -8.7564 2.1281 22 7 13.8233 -8.9477 3.0634 23 14 16.2914 -9.7785 2.1180 24 1 17.3364 -9.0925 2.9195 25 1 16.0138 -11.1137 2.7056 26 1 16.7670 -9.9418 0.7206 27 7 10.7462 -5.6999 -0.0031 28 6 2.1969 -1.1966 -0.0005 29 6 1.4434 -2.5016 -0.0017 30 1 -0.3634 -0.0005 1.0277 31 1 -0.3634 0.8903 -0.5135 32 1 -0.3634 -0.8898 -0.5143 33 1 1.6565 2.1324 0.0004 34 1 4.1176 2.1381 -0.0010 35 1 5.3551 0.0101 0.0098 36 1 6.0279 -1.7630 0.8885 37 1 6.0277 -1.7620 -0.8915 38 1 5.9441 -4.2406 -0.8920 39 1 5.9443 -4.2409 0.8879 40 1 8.0807 -5.6212 -0.0024 41 1 10.2941 -2.4940 -0.0026 42 1 12.8285 -3.1742 -0.0023 43 1 13.3454 -6.5598 -0.9493 44 1 14.1457 -5.3432 0.0742 45 1 13.1962 -6.4197 2.0961 46 1 12.3960 -7.6363 1.0726 47 1 13.9682 -9.6192 3.7481 48 1 1.2616 -2.8171 1.0257 49 1 0.4911 -2.3708 -0.5156 50 1 2.0325 -3.2609 -0.5162 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072287832.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:29 Heat of formation + Delta-G solvation = 19.620976 kcal Electronic energy + Delta-G solvation = -29429.923132 eV Core-core repulsion = 25231.012520 eV Total energy + Delta-G solvation = -4198.910613 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 357.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.08637 -40.65972 -39.62363 -38.07894 -35.17480 -33.87930 -33.71523 -32.84403 -31.92948 -31.01152 -29.75182 -28.54110 -27.73768 -26.78409 -25.39315 -24.40961 -22.12817 -21.96912 -21.59800 -20.79818 -20.06485 -19.82279 -18.21567 -17.17917 -16.83169 -16.78980 -16.61868 -16.29372 -15.84964 -15.48262 -15.29496 -14.79300 -14.61358 -14.43971 -14.28713 -13.99192 -13.85574 -13.40366 -13.36380 -13.22533 -12.95640 -12.82189 -12.70289 -12.65156 -12.32297 -12.27194 -11.97155 -11.93890 -11.60690 -11.56402 -11.10331 -11.05115 -10.99869 -10.92658 -10.61895 -10.45611 -10.03774 -9.91412 -9.72943 -9.33402 -8.94793 -8.49860 -8.46475 -8.42121 -7.82351 -6.11385 -4.17014 0.98011 1.12480 1.99620 2.24011 2.56005 2.90719 3.25562 3.32128 3.34664 3.39680 3.40122 3.55462 4.23478 4.36799 4.42414 4.46764 4.56103 4.60923 4.70103 4.81736 4.87364 4.98616 5.05879 5.15047 5.16767 5.24830 5.29162 5.31954 5.34566 5.35211 5.40402 5.44023 5.51644 5.60933 5.89990 5.92844 5.98773 6.05343 6.10508 6.14792 6.15136 6.26732 6.31930 6.48010 6.49886 7.06367 7.08288 7.22948 7.42169 7.55949 7.64900 7.89295 7.94565 8.18644 8.25137 8.89182 9.47874 10.99684 Molecular weight = 357.18amu Principal moments of inertia in cm(-1) A = 0.028032 B = 0.001314 C = 0.001276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.623394 B =21308.839927 C =21937.459973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.054 4.054 3 C -0.157 4.157 4 C -0.082 4.082 5 C -0.209 4.209 6 C 0.136 3.864 7 O -0.314 6.314 8 C 0.075 3.925 9 C -0.136 4.136 10 C 0.528 3.472 11 O -0.518 6.518 12 N -0.629 5.629 13 C 0.269 3.731 14 C -0.280 4.280 15 C 0.056 3.944 16 N -0.339 5.339 17 C 0.132 3.868 18 C 0.016 3.984 19 C -0.530 4.530 20 H 0.059 0.941 21 C 0.062 3.938 22 N -0.889 5.889 23 Si 0.897 3.103 24 H -0.279 1.279 25 H -0.285 1.285 26 H -0.273 1.273 27 N -0.304 5.304 28 C -0.120 4.120 29 C -0.108 4.108 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.122 0.878 34 H 0.124 0.876 35 H 0.131 0.869 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.110 0.890 39 H 0.111 0.889 40 H 0.415 0.585 41 H 0.164 0.836 42 H 0.172 0.828 43 H 0.075 0.925 44 H 0.087 0.913 45 H 0.021 0.979 46 H 0.033 0.967 47 H 0.263 0.737 48 H 0.068 0.932 49 H 0.067 0.933 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.738 18.335 -7.550 32.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.054 4.054 3 C -0.175 4.175 4 C -0.100 4.100 5 C -0.228 4.228 6 C 0.091 3.909 7 O -0.228 6.228 8 C 0.000 4.000 9 C -0.176 4.176 10 C 0.313 3.687 11 O -0.393 6.393 12 N -0.277 5.277 13 C 0.015 3.985 14 C -0.311 4.311 15 C -0.092 4.092 16 N -0.122 5.122 17 C 0.013 3.987 18 C -0.022 4.022 19 C -0.569 4.569 20 H 0.077 0.923 21 C -0.141 4.141 22 N -0.527 5.527 23 Si 0.724 3.276 24 H -0.205 1.205 25 H -0.211 1.211 26 H -0.197 1.197 27 N -0.134 5.134 28 C -0.121 4.121 29 C -0.164 4.164 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.140 0.860 34 H 0.142 0.858 35 H 0.149 0.851 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.128 0.872 39 H 0.129 0.871 40 H 0.251 0.749 41 H 0.182 0.818 42 H 0.190 0.810 43 H 0.093 0.907 44 H 0.106 0.894 45 H 0.039 0.961 46 H 0.052 0.948 47 H 0.072 0.928 48 H 0.086 0.914 49 H 0.086 0.914 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -25.251 17.466 -7.402 31.583 hybrid contribution 0.972 -0.035 0.195 0.992 sum -24.279 17.432 -7.207 30.745 Atomic orbital electron populations 1.20871 0.90885 1.03028 1.02582 1.19577 0.95956 0.91852 0.97999 1.20923 0.94174 0.97438 1.04977 1.20924 0.94129 0.97486 0.97461 1.21329 1.00645 0.92182 1.08646 1.18722 0.91051 0.84533 0.96609 1.85942 1.19899 1.28319 1.88609 1.22416 0.77610 0.96670 1.03346 1.21398 0.90846 0.98620 1.06713 1.20247 0.88897 0.83509 0.76000 1.90670 1.72932 1.27818 1.47848 1.42440 1.02641 1.10177 1.72413 1.19089 0.83855 0.93126 1.02406 1.21614 0.90902 0.99550 1.19024 1.22619 0.98881 0.85838 1.01902 1.48828 1.04874 1.04425 1.54081 1.22318 0.79063 0.94231 1.03055 1.19363 0.98444 0.93249 0.91163 1.21028 1.03837 1.19587 1.12411 0.92286 1.24994 0.96772 0.97026 0.95282 1.69978 1.34242 1.33791 1.14647 0.86520 0.83122 0.79596 0.78331 1.20544 1.21093 1.19735 1.77370 0.87821 1.19965 1.28256 1.19080 0.90259 0.96037 1.06692 1.20672 0.99499 0.93888 1.02335 0.90885 0.91434 0.90917 0.86035 0.85781 0.85093 0.90772 0.90825 0.87173 0.87077 0.74873 0.81841 0.81039 0.90664 0.89448 0.96088 0.94817 0.92755 0.91374 0.91413 0.91138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.60 9.60 36.00 0.35 -0.26 16 2 C -0.05 -0.42 5.88 -104.65 -0.62 -1.04 16 3 C -0.16 -1.21 9.70 -39.56 -0.38 -1.59 16 4 C -0.08 -0.67 10.04 -39.61 -0.40 -1.07 16 5 C -0.21 -1.94 9.04 -39.43 -0.36 -2.29 16 6 C 0.14 1.34 6.66 -39.22 -0.26 1.08 16 7 O -0.31 -3.00 9.18 -19.44 -0.18 -3.18 16 8 C 0.08 0.66 4.03 37.16 0.15 0.80 16 9 C -0.14 -1.03 6.07 -27.88 -0.17 -1.20 16 10 C 0.53 6.15 7.80 -10.98 -0.09 6.06 16 11 O -0.52 -7.57 13.11 5.54 0.07 -7.50 16 12 N -0.63 -8.17 5.45 -11.13 -0.06 -8.23 16 13 C 0.27 4.71 8.11 -154.40 -1.25 3.46 16 14 C -0.28 -4.77 9.61 -39.83 -0.38 -5.15 16 15 C 0.06 0.93 11.44 -17.24 -0.20 0.73 16 16 N -0.34 -6.61 3.68 -61.38 -0.23 -6.83 16 17 C 0.13 2.66 6.45 -4.04 -0.03 2.64 16 18 C 0.02 0.40 5.15 -27.88 -0.14 0.25 16 19 C -0.53 -14.43 9.11 -34.44 -0.31 -14.75 16 20 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 21 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 22 N -0.89 -26.42 13.29 55.43 0.74 -25.68 16 23 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 25 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 26 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 27 N -0.30 -6.13 12.43 31.44 0.39 -5.74 16 28 C -0.12 -1.07 5.89 -104.47 -0.62 -1.69 16 29 C -0.11 -0.76 9.38 36.01 0.34 -0.42 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.28 8.09 -51.93 -0.42 -0.14 16 32 H 0.07 0.32 5.94 -51.93 -0.31 0.01 16 33 H 0.12 0.69 8.06 -52.49 -0.42 0.26 16 34 H 0.12 0.76 8.06 -52.48 -0.42 0.34 16 35 H 0.13 1.12 6.30 -52.49 -0.33 0.79 16 36 H 0.07 0.68 7.61 -51.93 -0.40 0.28 16 37 H 0.07 0.66 7.63 -51.93 -0.40 0.26 16 38 H 0.11 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.42 4.23 8.82 -40.82 -0.36 3.87 16 41 H 0.16 2.70 5.91 -52.49 -0.31 2.39 16 42 H 0.17 2.16 8.06 -52.49 -0.42 1.74 16 43 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 44 H 0.09 1.54 8.07 -51.93 -0.42 1.12 16 45 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.03 0.95 8.14 -51.93 -0.42 0.53 16 47 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 48 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 49 H 0.07 0.37 5.94 -51.93 -0.31 0.06 16 50 H 0.07 0.53 7.53 -51.93 -0.39 0.13 16 LS Contribution 416.47 15.07 6.28 6.28 Total: -1.00 -34.53 416.47 -9.88 -44.41 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -7.41 Total: 3.24 kcal Atomic # 6 Polarization: -8.34 SS G_CDS: -4.46 Total: -12.80 kcal Atomic # 7 Polarization: -47.33 SS G_CDS: 0.84 Total: -46.49 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: -0.11 Total: -10.68 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -34.53 -9.88 -44.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072287832.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.035 kcal (2) G-P(sol) polarization free energy of solvation -34.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds