Wall clock time and date at job start Tue Mar 31 2020 05:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86793 * 120.00385 * 2 1 4 4 H 1.48504 * 109.47117 * 269.99919 * 3 2 1 5 5 H 1.48505 * 109.47164 * 29.99499 * 3 2 1 6 6 H 1.48496 * 109.47338 * 149.99909 * 3 2 1 7 7 C 1.37878 * 119.99977 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00330 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99653 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.46929 * 184.78649 * 9 7 2 11 11 C 1.46900 * 110.99835 * 284.11827 * 10 9 7 12 12 C 1.50698 * 109.47104 * 169.99905 * 11 10 9 13 13 O 1.21281 * 120.00051 * 0.02562 * 12 11 10 14 14 N 1.34778 * 120.00413 * 179.97438 * 12 11 10 15 15 C 1.47081 * 120.88454 * 180.02562 * 14 12 11 16 16 C 1.53247 * 108.51789 * 231.20574 * 15 14 12 17 17 N 1.46897 * 109.33827 * 306.17117 * 16 15 14 18 18 C 1.39678 * 110.99373 * 187.25715 * 17 16 15 19 19 C 1.38918 * 120.07266 * 180.02562 * 18 17 16 20 20 C 1.38104 * 119.92656 * 180.02562 * 19 18 17 21 21 C 1.38284 * 120.07083 * 359.97438 * 20 19 18 22 22 C 1.38287 * 120.15289 * 359.97438 * 21 20 19 23 23 C 1.38104 * 120.07364 * 0.02562 * 22 21 20 24 24 C 1.46897 * 111.27146 * 63.10699 * 17 16 15 25 25 C 1.47083 * 120.87661 * 0.02562 * 14 12 11 26 26 C 1.46896 * 111.00045 * 160.16705 * 10 9 7 27 27 C 1.53006 * 109.46893 * 287.59701 * 26 10 9 28 28 C 1.53001 * 117.49638 * 245.58951 * 27 26 10 29 29 C 1.53003 * 117.49644 * 176.92988 * 27 26 10 30 30 H 0.96993 * 119.99506 * 0.02562 * 1 2 3 31 31 H 1.08989 * 109.47372 * 64.78599 * 9 7 2 32 32 H 1.09003 * 109.47417 * 304.78198 * 9 7 2 33 33 H 1.09005 * 109.47136 * 50.00440 * 11 10 9 34 34 H 1.09004 * 109.47498 * 289.99947 * 11 10 9 35 35 H 1.09000 * 109.62865 * 111.49872 * 15 14 12 36 36 H 1.08993 * 109.78541 * 351.00829 * 15 14 12 37 37 H 1.08998 * 109.48655 * 186.21049 * 16 15 14 38 38 H 1.08999 * 109.51122 * 66.14268 * 16 15 14 39 39 H 1.07998 * 120.03364 * 359.97438 * 19 18 17 40 40 H 1.07995 * 119.95912 * 179.97438 * 20 19 18 41 41 H 1.08002 * 119.91900 * 179.72814 * 21 20 19 42 42 H 1.07997 * 119.95950 * 179.97438 * 22 21 20 43 43 H 1.08002 * 120.03339 * 180.02562 * 23 22 21 44 44 H 1.08998 * 109.49504 * 56.85446 * 24 17 16 45 45 H 1.09005 * 109.49023 * 176.93572 * 24 17 16 46 46 H 1.08996 * 109.62864 * 248.50487 * 25 14 12 47 47 H 1.08995 * 109.62789 * 9.08416 * 25 14 12 48 48 H 1.09000 * 109.47326 * 47.60053 * 26 10 9 49 49 H 1.09001 * 109.47335 * 167.60395 * 26 10 9 50 50 H 1.08996 * 115.54850 * 31.25976 * 27 26 10 51 51 H 1.08994 * 117.50413 * 359.97438 * 28 27 26 52 52 H 1.08999 * 117.49648 * 145.02865 * 28 27 26 53 53 H 1.08993 * 117.49713 * 214.98052 * 29 27 26 54 54 H 1.09003 * 117.49921 * 359.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2013 -3.6133 0.1167 11 6 2.8924 -3.8508 -1.1576 12 6 4.0229 -4.8237 -0.9423 13 8 4.2320 -5.2753 0.1637 14 7 4.8010 -5.1930 -1.9790 15 6 5.9092 -6.1416 -1.7909 16 6 7.1790 -5.5327 -2.3952 17 7 6.9189 -5.1497 -3.7894 18 6 8.0946 -4.7424 -4.4241 19 6 8.0641 -4.3377 -5.7527 20 6 9.2284 -3.9361 -6.3774 21 6 10.4235 -3.9359 -5.6818 22 6 10.4573 -4.3371 -4.3588 23 6 9.2966 -4.7399 -3.7280 24 6 5.8875 -4.1071 -3.8721 25 6 4.5645 -4.6579 -3.3284 26 6 1.5288 -4.8321 0.5859 27 6 1.1767 -4.6822 2.0673 28 6 1.8814 -5.6106 3.0585 29 6 0.4020 -5.8240 2.7284 30 1 -0.4849 0.8400 -0.0004 31 1 0.6906 -2.5952 -0.9293 32 1 0.5612 -2.5205 0.8443 33 1 3.2905 -2.9093 -1.5360 34 1 2.1895 -4.2648 -1.8806 35 1 5.6775 -7.0799 -2.2948 36 1 6.0614 -6.3249 -0.7273 37 1 7.9846 -6.2662 -2.3637 38 1 7.4675 -4.6506 -1.8235 39 1 7.1311 -4.3381 -6.2966 40 1 9.2054 -3.6218 -7.4104 41 1 11.3334 -3.6255 -6.1740 42 1 11.3924 -4.3361 -3.8186 43 1 9.3236 -5.0527 -2.6946 44 1 6.1935 -3.2448 -3.2798 45 1 5.7565 -3.8068 -4.9117 46 1 4.2036 -5.4538 -3.9798 47 1 3.8265 -3.8572 -3.2806 48 1 0.6169 -4.9888 0.0097 49 1 2.1926 -5.6867 0.4551 50 1 0.9565 -3.6671 2.3978 51 1 2.5956 -6.3285 2.6552 52 1 2.1244 -5.2064 4.0411 53 1 -0.3276 -5.5601 3.4940 54 1 0.1428 -6.6818 2.1078 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072308447.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:17 Heat of formation + Delta-G solvation = 32.877695 kcal Electronic energy + Delta-G solvation = -32247.797268 eV Core-core repulsion = 28185.294604 eV Total energy + Delta-G solvation = -4062.502664 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 357.216 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.68369 -40.62812 -39.04166 -38.20816 -36.79537 -35.66895 -34.57751 -32.88392 -31.58764 -31.07735 -29.70436 -29.26109 -27.49072 -26.00126 -25.22906 -23.66731 -23.22017 -23.02344 -22.60559 -21.70453 -21.01435 -19.94539 -18.82869 -18.58015 -17.84707 -17.19767 -16.88847 -16.69626 -16.60976 -16.41822 -16.32732 -15.83365 -15.57560 -15.30714 -15.21526 -14.98051 -14.82860 -14.46035 -14.35706 -14.21867 -14.06001 -13.76894 -13.47277 -13.34738 -13.15117 -12.91930 -12.66566 -12.64553 -12.59185 -12.48050 -12.37739 -12.34445 -12.27204 -12.15286 -11.85474 -11.75722 -11.36617 -11.12276 -10.82612 -10.80368 -10.66345 -10.50267 -9.84463 -9.70274 -8.97589 -8.82470 -8.18156 -6.27874 0.45285 0.50221 1.39832 1.42263 1.53232 1.61500 1.85235 2.40553 2.59387 2.91329 2.96249 3.13527 3.30687 3.51546 3.77899 3.85072 3.87633 3.94770 4.07768 4.08125 4.12861 4.21417 4.24192 4.25239 4.30747 4.37083 4.43028 4.51723 4.56818 4.57989 4.59784 4.63355 4.71069 4.73190 4.75441 4.77482 4.79957 4.85349 4.95027 5.04586 5.12792 5.15433 5.24783 5.28245 5.29868 5.41036 5.48746 5.52608 5.66936 5.67521 5.81543 5.95571 6.08317 6.19226 6.32239 6.43808 6.59731 6.86469 7.20355 7.41347 8.91929 Molecular weight = 357.22amu Principal moments of inertia in cm(-1) A = 0.008842 B = 0.002738 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3165.991398 B =10224.719833 C =12537.108830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.008 3.992 3 Si 0.962 3.038 4 H -0.267 1.267 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.211 3.789 10 N -0.531 5.531 11 C 0.049 3.951 12 C 0.521 3.479 13 O -0.553 6.553 14 N -0.617 5.617 15 C 0.119 3.881 16 C 0.045 3.955 17 N -0.487 5.487 18 C 0.096 3.904 19 C -0.150 4.150 20 C -0.101 4.101 21 C -0.155 4.155 22 C -0.103 4.103 23 C -0.186 4.186 24 C 0.047 3.953 25 C 0.109 3.891 26 C 0.095 3.905 27 C -0.159 4.159 28 C -0.164 4.164 29 C -0.165 4.165 30 H 0.264 0.736 31 H -0.029 1.029 32 H 0.013 0.987 33 H 0.101 0.899 34 H 0.066 0.934 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.109 0.891 38 H 0.037 0.963 39 H 0.135 0.865 40 H 0.144 0.856 41 H 0.139 0.861 42 H 0.137 0.863 43 H 0.129 0.871 44 H 0.035 0.965 45 H 0.115 0.885 46 H 0.098 0.902 47 H 0.098 0.902 48 H 0.019 0.981 49 H 0.078 0.922 50 H 0.077 0.923 51 H 0.091 0.909 52 H 0.093 0.907 53 H 0.103 0.897 54 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.505 -12.764 -12.424 24.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.191 4.191 3 Si 0.787 3.213 4 H -0.193 1.193 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.557 4.557 8 H 0.074 0.926 9 C 0.086 3.914 10 N -0.256 5.256 11 C -0.082 4.082 12 C 0.310 3.690 13 O -0.431 6.431 14 N -0.352 5.352 15 C -0.003 4.003 16 C -0.083 4.083 17 N -0.203 5.203 18 C -0.002 4.002 19 C -0.170 4.170 20 C -0.119 4.119 21 C -0.173 4.173 22 C -0.122 4.122 23 C -0.207 4.207 24 C -0.079 4.079 25 C -0.014 4.014 26 C -0.033 4.033 27 C -0.178 4.178 28 C -0.201 4.201 29 C -0.202 4.202 30 H 0.073 0.927 31 H -0.011 1.011 32 H 0.031 0.969 33 H 0.119 0.881 34 H 0.084 0.916 35 H 0.105 0.895 36 H 0.104 0.896 37 H 0.127 0.873 38 H 0.056 0.944 39 H 0.153 0.847 40 H 0.162 0.838 41 H 0.157 0.843 42 H 0.155 0.845 43 H 0.147 0.853 44 H 0.053 0.947 45 H 0.133 0.867 46 H 0.116 0.884 47 H 0.116 0.884 48 H 0.037 0.963 49 H 0.096 0.904 50 H 0.096 0.904 51 H 0.109 0.891 52 H 0.111 0.889 53 H 0.121 0.879 54 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 16.544 -13.186 -11.678 24.165 hybrid contribution -0.247 1.516 0.025 1.536 sum 16.297 -11.670 -11.653 23.185 Atomic orbital electron populations 1.70071 1.07504 1.27806 1.51753 1.25791 0.95642 1.02717 0.94904 0.85493 0.78400 0.78793 0.78600 1.19265 1.20858 1.19704 1.21389 0.93266 0.91105 1.49936 0.92640 1.19430 0.89943 0.88125 0.93937 1.61659 1.31129 1.05675 1.27119 1.21867 0.94809 0.98978 0.92536 1.20781 0.83224 0.81190 0.83839 1.90623 1.71324 1.56289 1.24827 1.48251 1.32090 1.45900 1.08956 1.21693 0.84582 0.92139 1.01911 1.22623 0.98307 1.00594 0.86743 1.59093 1.07662 1.37982 1.15529 1.19146 0.89907 0.96781 0.94319 1.21027 0.99952 1.02910 0.93137 1.21340 0.92051 0.97811 1.00747 1.21410 0.98934 1.02073 0.94929 1.21295 0.98169 0.97288 0.95409 1.21518 0.93225 1.05381 1.00559 1.22664 0.90603 0.91374 1.03300 1.22064 0.96998 1.00371 0.81975 1.21614 0.95543 0.92801 0.93359 1.22096 1.06107 0.95476 0.94145 1.22896 0.95109 1.02356 0.99719 1.23037 0.94477 0.99506 1.03190 0.92682 1.01122 0.96899 0.88121 0.91626 0.89459 0.89634 0.87267 0.94431 0.84691 0.83846 0.84281 0.84510 0.85302 0.94667 0.86740 0.88436 0.88411 0.96291 0.90368 0.90431 0.89092 0.88864 0.87868 0.87866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.27 13.29 21.45 0.28 -54.99 16 2 C 0.01 0.44 5.46 84.65 0.46 0.90 16 3 Si 0.96 44.11 29.54 68.60 2.03 46.14 16 4 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 5 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 6 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 7 C -0.52 -29.26 8.62 25.60 0.22 -29.04 16 8 H 0.06 3.13 7.66 -2.91 -0.02 3.11 16 9 C 0.21 11.21 4.55 85.56 0.39 11.60 16 10 N -0.53 -24.05 4.11 -905.35 -3.72 -27.78 16 11 C 0.05 1.83 3.64 85.56 0.31 2.15 16 12 C 0.52 17.85 7.26 87.66 0.64 18.49 16 13 O -0.55 -22.47 13.94 -3.03 -0.04 -22.51 16 14 N -0.62 -15.85 3.01 -817.87 -2.46 -18.31 16 15 C 0.12 2.61 6.59 86.35 0.57 3.18 16 16 C 0.04 0.86 4.30 86.39 0.37 1.23 16 17 N -0.49 -9.18 4.67 -694.28 -3.24 -12.42 16 18 C 0.10 1.81 5.65 38.21 0.22 2.03 16 19 C -0.15 -2.49 9.14 22.40 0.20 -2.29 16 20 C -0.10 -1.45 10.04 22.25 0.22 -1.23 16 21 C -0.15 -2.21 10.04 22.29 0.22 -1.98 16 22 C -0.10 -1.61 10.04 22.25 0.22 -1.39 16 23 C -0.19 -3.37 8.83 22.40 0.20 -3.17 16 24 C 0.05 0.87 5.43 86.39 0.47 1.34 16 25 C 0.11 2.14 6.51 86.36 0.56 2.70 16 26 C 0.09 3.81 4.79 86.31 0.41 4.23 16 27 C -0.16 -6.22 5.58 -10.79 -0.06 -6.28 16 28 C -0.16 -5.40 10.18 30.62 0.31 -5.09 16 29 C -0.16 -4.95 10.26 30.62 0.31 -4.63 16 30 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 31 H -0.03 -1.60 8.00 -2.39 -0.02 -1.62 16 32 H 0.01 0.75 6.48 -2.39 -0.02 0.74 16 33 H 0.10 3.89 6.85 -2.38 -0.02 3.87 16 34 H 0.07 2.20 7.98 -2.38 -0.02 2.18 16 35 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.09 2.14 7.07 -2.39 -0.02 2.12 16 37 H 0.11 1.71 6.89 -2.39 -0.02 1.70 16 38 H 0.04 0.84 7.82 -2.39 -0.02 0.82 16 39 H 0.14 1.87 7.15 -2.91 -0.02 1.84 16 40 H 0.14 1.38 8.06 -2.91 -0.02 1.35 16 41 H 0.14 1.35 8.06 -2.91 -0.02 1.32 16 42 H 0.14 1.58 8.06 -2.91 -0.02 1.56 16 43 H 0.13 2.14 5.81 -2.91 -0.02 2.12 16 44 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 45 H 0.11 1.66 6.66 -2.38 -0.02 1.64 16 46 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 47 H 0.10 1.98 6.02 -2.39 -0.01 1.96 16 48 H 0.02 0.76 8.05 -2.39 -0.02 0.74 16 49 H 0.08 3.06 5.55 -2.39 -0.01 3.05 16 50 H 0.08 3.54 6.90 -2.39 -0.02 3.52 16 51 H 0.09 3.00 8.04 -2.39 -0.02 2.98 16 52 H 0.09 2.89 8.14 -2.39 -0.02 2.87 16 53 H 0.10 2.79 8.14 -2.39 -0.02 2.77 16 54 H 0.10 2.75 8.14 -2.39 -0.02 2.73 16 Total: -1.00 -70.33 421.01 -0.02 -70.35 By element: Atomic # 1 Polarization: 25.90 SS G_CDS: 0.88 Total: 26.78 kcal Atomic # 6 Polarization: -13.53 SS G_CDS: 6.26 Total: -7.27 kcal Atomic # 7 Polarization: -104.35 SS G_CDS: -9.14 Total: -113.49 kcal Atomic # 8 Polarization: -22.47 SS G_CDS: -0.04 Total: -22.51 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -70.33 -0.02 -70.35 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072308447.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.227 kcal (2) G-P(sol) polarization free energy of solvation -70.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds