Wall clock time and date at job start Tue Mar 31 2020 05:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 H 1.08997 * 109.46856 * 2 1 4 4 O 1.42901 * 109.47009 * 240.00083 * 2 1 3 5 5 C 1.52997 * 109.47140 * 119.99840 * 2 1 3 6 6 N 1.46894 * 109.47107 * 181.06200 * 5 2 1 7 7 C 1.46900 * 110.99827 * 200.12579 * 6 5 2 8 8 C 1.53244 * 109.33821 * 172.74373 * 7 6 5 9 9 N 1.47086 * 108.52107 * 53.83337 * 8 7 6 10 10 C 1.34768 * 120.88460 * 128.79156 * 9 8 7 11 11 O 1.21678 * 120.00095 * 184.19274 * 10 9 8 12 12 C 1.46931 * 119.99924 * 4.19105 * 10 9 8 13 13 C 1.36383 * 126.72850 * 307.54238 * 12 10 9 14 14 N 1.35895 * 109.73240 * 179.97438 * 13 12 10 15 15 C 1.37126 * 124.84268 * 180.02562 * 14 13 12 16 16 H 1.07989 * 120.00565 * 149.63853 * 15 14 13 17 17 C 1.38990 * 119.99502 * 329.63804 * 15 14 13 18 18 N 1.31334 * 119.99962 * 169.94205 * 17 15 14 19 19 Si 1.86796 * 120.00158 * 349.94524 * 17 15 14 20 20 H 1.48506 * 109.47352 * 87.51452 * 19 17 15 21 21 H 1.48495 * 109.47165 * 207.51326 * 19 17 15 22 22 H 1.48500 * 109.47203 * 327.51503 * 19 17 15 23 23 C 1.38310 * 110.31634 * 359.97438 * 14 13 12 24 24 C 1.39014 * 133.15804 * 180.02562 * 23 14 13 25 25 C 1.37904 * 119.93070 * 179.38031 * 24 23 14 26 26 C 1.38677 * 120.60680 * 0.45331 * 25 24 23 27 27 C 1.37888 * 120.28714 * 359.71350 * 26 25 24 28 28 C 1.39180 * 119.68190 * 359.97438 * 27 26 25 29 29 C 1.47081 * 118.23304 * 308.81436 * 9 8 7 30 30 C 1.46899 * 111.00201 * 75.82564 * 6 5 2 31 31 H 1.08994 * 109.46950 * 299.99964 * 1 2 3 32 32 H 1.09002 * 109.46845 * 60.00355 * 1 2 3 33 33 H 1.08997 * 109.46856 * 180.02562 * 1 2 3 34 34 H 0.96693 * 114.00205 * 60.00046 * 4 2 1 35 35 H 1.09003 * 109.47175 * 301.06079 * 5 2 1 36 36 H 1.09003 * 109.47185 * 61.06210 * 5 2 1 37 37 H 1.08998 * 109.49446 * 292.70276 * 7 6 5 38 38 H 1.08993 * 109.49648 * 52.79010 * 7 6 5 39 39 H 1.08997 * 109.63099 * 294.11863 * 8 7 6 40 40 H 1.09001 * 109.63071 * 173.53625 * 8 7 6 41 41 H 1.07998 * 125.13695 * 359.92779 * 13 12 10 42 42 H 0.96997 * 120.00406 * 180.02562 * 18 17 15 43 43 H 1.08004 * 120.03127 * 359.93894 * 24 23 14 44 44 H 1.07997 * 119.69249 * 180.12182 * 25 24 23 45 45 H 1.08000 * 119.85454 * 179.69744 * 26 25 24 46 46 H 1.08000 * 120.15745 * 179.97438 * 27 26 25 47 47 H 1.09003 * 109.62586 * 291.47291 * 29 9 8 48 48 H 1.08999 * 109.62663 * 170.89680 * 29 9 8 49 49 H 1.08999 * 109.49025 * 307.21113 * 30 6 5 50 50 H 1.08996 * 109.49267 * 67.29087 * 30 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.0401 -0.7212 1.2492 6 7 3.5088 -0.6990 1.2621 7 6 4.0435 -1.7489 2.1395 8 6 5.5670 -1.8111 1.9864 9 7 6.1153 -0.4664 2.2201 10 6 7.1231 -0.2725 3.0935 11 8 7.5134 0.8552 3.3316 12 6 7.7506 -1.4227 3.7584 13 6 7.1150 -2.4113 4.4504 14 7 8.0275 -3.3018 4.9207 15 6 7.7253 -4.4175 5.6583 16 1 8.3494 -5.2961 5.5890 17 6 6.6156 -4.4176 6.4952 18 7 6.2101 -5.5378 7.0480 19 14 5.7010 -2.8245 6.8338 20 1 4.6679 -2.6148 5.7878 21 1 5.0484 -2.9017 8.1654 22 1 6.6594 -1.6903 6.8172 23 6 9.3045 -2.9228 4.5481 24 6 10.5618 -3.4740 4.7670 25 6 11.6820 -2.8605 4.2468 26 6 11.5690 -1.6897 3.5124 27 6 10.3306 -1.1264 3.2879 28 6 9.1914 -1.7389 3.8019 29 6 5.5341 0.6610 1.4755 30 6 4.0120 0.6259 1.6488 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 1.7211 -0.2701 -1.9979 35 1 1.6613 -0.2184 2.1391 36 1 1.6924 -1.7542 1.2398 37 1 3.7910 -1.5210 3.1751 38 1 3.6106 -2.7100 1.8623 39 1 5.8206 -2.1399 0.9787 40 1 5.9803 -2.5069 2.7166 41 1 6.0478 -2.4762 4.6025 42 1 5.4355 -5.5380 7.6318 43 1 10.6603 -4.3866 5.3361 44 1 12.6567 -3.2931 4.4175 45 1 12.4548 -1.2168 3.1147 46 1 10.2450 -0.2142 2.7160 47 1 5.7846 0.5698 0.4186 48 1 5.9257 1.5996 1.8678 49 1 3.5562 1.3870 1.0155 50 1 3.7599 0.8207 2.6911 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075602973.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:11 Heat of formation + Delta-G solvation = -25.192810 kcal Electronic energy + Delta-G solvation = -32705.662704 eV Core-core repulsion = 28504.808820 eV Total energy + Delta-G solvation = -4200.853884 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 357.184 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.48019 -40.94023 -39.35491 -38.09524 -37.84297 -35.54327 -35.20041 -33.33899 -32.28964 -32.11973 -30.91260 -29.96042 -28.99721 -27.08019 -25.78526 -24.96326 -23.91946 -23.38378 -22.34350 -22.07937 -21.59542 -19.91198 -19.58673 -18.55502 -18.22994 -17.67523 -17.35315 -17.11737 -16.40627 -16.31997 -16.21170 -15.94849 -15.92973 -15.63997 -15.53161 -15.09762 -15.03062 -14.62536 -14.57987 -14.39278 -14.32260 -14.15026 -13.59162 -13.54026 -13.31983 -13.26255 -12.96771 -12.83067 -12.79790 -12.56262 -12.43265 -12.35377 -12.23479 -12.15727 -12.01921 -11.79203 -11.54563 -11.26054 -10.96489 -10.77872 -10.50799 -9.84472 -9.30856 -9.13483 -8.91022 -8.73165 -6.52073 0.15480 0.75157 0.97725 1.15062 1.19294 1.30053 1.82928 1.87160 2.07895 2.43250 2.67316 2.76466 3.12325 3.40548 3.63938 3.70821 3.85367 3.92363 3.98498 4.03206 4.11288 4.18002 4.23867 4.27592 4.31307 4.35536 4.43569 4.50037 4.54163 4.61337 4.67910 4.71103 4.73419 4.75057 4.80125 4.89489 4.97750 4.99367 5.00757 5.02604 5.15546 5.28620 5.32412 5.49400 5.63369 5.69358 5.75432 5.88154 5.93302 5.98545 6.04530 6.28895 6.34787 6.75174 7.05413 7.06903 7.17369 8.21377 Molecular weight = 357.18amu Principal moments of inertia in cm(-1) A = 0.010627 B = 0.003455 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2634.231679 B = 8101.720598 C = 9840.870886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.111 3.889 3 H 0.060 0.940 4 O -0.573 6.573 5 C 0.055 3.945 6 N -0.530 5.530 7 C 0.045 3.955 8 C 0.106 3.894 9 N -0.609 5.609 10 C 0.604 3.396 11 O -0.583 6.583 12 C -0.283 4.283 13 C 0.040 3.960 14 N -0.297 5.297 15 C -0.360 4.360 16 H 0.103 0.897 17 C 0.048 3.952 18 N -0.866 5.866 19 Si 0.921 3.079 20 H -0.243 1.243 21 H -0.266 1.266 22 H -0.273 1.273 23 C 0.035 3.965 24 C -0.118 4.118 25 C -0.114 4.114 26 C -0.136 4.136 27 C -0.097 4.097 28 C -0.090 4.090 29 C 0.117 3.883 30 C 0.047 3.953 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.057 0.943 34 H 0.387 0.613 35 H 0.057 0.943 36 H 0.077 0.923 37 H 0.025 0.975 38 H 0.101 0.899 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.160 0.840 42 H 0.295 0.705 43 H 0.118 0.882 44 H 0.157 0.843 45 H 0.154 0.846 46 H 0.117 0.883 47 H 0.085 0.915 48 H 0.086 0.914 49 H 0.111 0.889 50 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.812 9.542 -13.183 18.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.051 3.949 3 H 0.078 0.922 4 O -0.380 6.380 5 C -0.073 4.073 6 N -0.254 5.254 7 C -0.083 4.083 8 C -0.017 4.017 9 N -0.341 5.341 10 C 0.395 3.605 11 O -0.465 6.465 12 C -0.295 4.295 13 C -0.098 4.098 14 N 0.040 4.960 15 C -0.487 4.487 16 H 0.121 0.879 17 C -0.162 4.162 18 N -0.497 5.497 19 Si 0.746 3.254 20 H -0.168 1.168 21 H -0.192 1.192 22 H -0.198 1.198 23 C -0.072 4.072 24 C -0.138 4.138 25 C -0.133 4.133 26 C -0.155 4.155 27 C -0.116 4.116 28 C -0.095 4.095 29 C -0.005 4.005 30 C -0.081 4.081 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.076 0.924 34 H 0.235 0.765 35 H 0.075 0.925 36 H 0.096 0.904 37 H 0.043 0.957 38 H 0.120 0.880 39 H 0.102 0.898 40 H 0.102 0.898 41 H 0.177 0.823 42 H 0.106 0.894 43 H 0.136 0.864 44 H 0.174 0.826 45 H 0.172 0.828 46 H 0.135 0.865 47 H 0.103 0.897 48 H 0.104 0.896 49 H 0.129 0.871 50 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -8.409 9.162 -12.724 17.792 hybrid contribution -1.221 0.583 1.191 1.802 sum -9.629 9.745 -11.533 17.909 Atomic orbital electron populations 1.22451 0.95041 1.02846 1.03528 1.21733 0.92856 0.94954 0.85310 0.92197 1.86618 1.77370 1.57649 1.16344 1.22284 0.86368 1.02029 0.96593 1.61886 1.08501 1.03526 1.51498 1.22476 0.94381 0.97012 0.94477 1.22044 0.93020 0.83490 1.03156 1.48103 1.34857 1.09816 1.41335 1.17396 0.78349 0.87103 0.77693 1.90662 1.64826 1.25509 1.65482 1.19494 0.93008 1.01204 1.15790 1.21781 0.94902 0.92430 1.00669 1.40107 1.03556 1.17152 1.35220 1.19363 1.14374 0.91379 1.23552 0.87946 1.25765 0.96466 0.99937 0.93995 1.69615 1.24728 1.27223 1.28170 0.86192 0.79865 0.79772 0.79582 1.16821 1.19197 1.19816 1.18798 0.86765 0.97242 1.04393 1.20329 0.89553 1.01118 1.02819 1.21075 0.97788 0.96151 0.98293 1.21167 0.96794 0.96709 1.00790 1.20546 0.91281 0.99376 1.00389 1.18861 0.92122 0.95958 1.02549 1.21774 0.92559 0.89487 0.96649 1.22526 0.94498 0.91927 0.99177 0.91083 0.90652 0.92355 0.76474 0.92530 0.90420 0.95698 0.88038 0.89776 0.89779 0.82285 0.89428 0.86398 0.82582 0.82824 0.86505 0.89690 0.89591 0.87112 0.95475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.87 9.54 71.99 0.69 -1.19 16 2 C 0.11 1.60 3.65 30.60 0.11 1.71 16 3 H 0.06 0.78 6.79 -2.39 -0.02 0.76 16 4 O -0.57 -9.88 13.20 -148.98 -1.97 -11.85 16 5 C 0.05 1.02 4.69 86.30 0.40 1.42 16 6 N -0.53 -12.25 4.44 -895.28 -3.98 -16.22 16 7 C 0.05 1.20 5.59 86.38 0.48 1.69 16 8 C 0.11 3.29 6.40 86.35 0.55 3.85 16 9 N -0.61 -20.84 3.01 -822.33 -2.47 -23.32 16 10 C 0.60 25.67 7.59 86.52 0.66 26.33 16 11 O -0.58 -27.45 16.56 -4.28 -0.07 -27.52 16 12 C -0.28 -12.95 5.39 -18.97 -0.10 -13.05 16 13 C 0.04 1.87 5.92 83.63 0.50 2.37 16 14 N -0.30 -14.80 2.67 -342.12 -0.91 -15.71 16 15 C -0.36 -18.98 10.33 84.05 0.87 -18.11 16 16 H 0.10 5.71 8.06 -2.92 -0.02 5.69 16 17 C 0.05 2.46 5.48 84.95 0.47 2.93 16 18 N -0.87 -45.43 13.95 21.67 0.30 -45.13 16 19 Si 0.92 40.92 24.70 68.60 1.69 42.62 16 20 H -0.24 -9.72 6.55 99.48 0.65 -9.07 16 21 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 22 H -0.27 -13.29 6.76 99.48 0.67 -12.62 16 23 C 0.04 1.66 6.73 38.83 0.26 1.92 16 24 C -0.12 -4.76 9.93 22.38 0.22 -4.54 16 25 C -0.11 -3.67 10.02 22.30 0.22 -3.45 16 26 C -0.14 -4.34 10.03 22.29 0.22 -4.11 16 27 C -0.10 -3.78 10.09 22.41 0.23 -3.55 16 28 C -0.09 -4.10 6.36 -20.06 -0.13 -4.23 16 29 C 0.12 3.20 6.61 86.35 0.57 3.78 16 30 C 0.05 1.06 5.45 86.38 0.47 1.53 16 31 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.39 3.37 9.08 -74.06 -0.67 2.70 16 35 H 0.06 0.96 8.00 -2.39 -0.02 0.94 16 36 H 0.08 1.50 7.77 -2.39 -0.02 1.48 16 37 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.10 2.43 7.90 -2.39 -0.02 2.41 16 39 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 40 H 0.08 2.99 4.16 -2.39 -0.01 2.98 16 41 H 0.16 7.04 4.03 -2.91 -0.01 7.02 16 42 H 0.29 14.11 8.31 -92.71 -0.77 13.34 16 43 H 0.12 4.60 8.06 -2.91 -0.02 4.58 16 44 H 0.16 3.73 8.06 -2.91 -0.02 3.71 16 45 H 0.15 3.62 8.06 -2.91 -0.02 3.60 16 46 H 0.12 4.34 8.06 -2.91 -0.02 4.32 16 47 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 48 H 0.09 2.50 7.04 -2.39 -0.02 2.49 16 49 H 0.11 1.87 6.68 -2.39 -0.02 1.86 16 50 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 Total: -1.00 -67.90 395.77 -0.51 -68.41 By element: Atomic # 1 Polarization: 33.22 SS G_CDS: 0.21 Total: 33.43 kcal Atomic # 6 Polarization: -11.40 SS G_CDS: 6.69 Total: -4.71 kcal Atomic # 7 Polarization: -93.31 SS G_CDS: -7.06 Total: -100.38 kcal Atomic # 8 Polarization: -37.33 SS G_CDS: -2.04 Total: -39.37 kcal Atomic # 14 Polarization: 40.92 SS G_CDS: 1.69 Total: 42.62 kcal Total: -67.90 -0.51 -68.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075602973.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.217 kcal (2) G-P(sol) polarization free energy of solvation -67.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds