Wall clock time and date at job start Tue Mar 31 2020 05:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 109.46699 * 2 1 4 4 O 1.42903 * 109.47140 * 119.99396 * 2 1 3 5 5 C 1.52999 * 109.47553 * 239.99704 * 2 1 3 6 6 N 1.46897 * 109.47261 * 179.97438 * 5 2 1 7 7 C 1.46894 * 111.00295 * 294.30509 * 6 5 2 8 8 C 1.53236 * 109.34283 * 172.74660 * 7 6 5 9 9 N 1.47079 * 108.52071 * 53.82692 * 8 7 6 10 10 C 1.34780 * 120.88503 * 128.79781 * 9 8 7 11 11 O 1.21667 * 120.00167 * 173.47142 * 10 9 8 12 12 C 1.46935 * 119.99152 * 353.46825 * 10 9 8 13 13 C 1.36378 * 126.73452 * 43.64030 * 12 10 9 14 14 N 1.35888 * 109.73831 * 179.97438 * 13 12 10 15 15 C 1.37124 * 124.84318 * 179.97438 * 14 13 12 16 16 H 1.08004 * 119.99658 * 207.65831 * 15 14 13 17 17 C 1.38983 * 120.00063 * 27.65429 * 15 14 13 18 18 N 1.31340 * 119.99734 * 10.67748 * 17 15 14 19 19 Si 1.86795 * 119.99896 * 190.67755 * 17 15 14 20 20 H 1.48500 * 109.47527 * 0.02562 * 19 17 15 21 21 H 1.48512 * 109.47015 * 120.00392 * 19 17 15 22 22 H 1.48500 * 109.47187 * 240.00034 * 19 17 15 23 23 C 1.38316 * 110.31442 * 0.02562 * 14 13 12 24 24 C 1.39012 * 133.15793 * 180.02562 * 23 14 13 25 25 C 1.37898 * 119.92823 * 179.37629 * 24 23 14 26 26 C 1.38678 * 120.61447 * 0.44757 * 25 24 23 27 27 C 1.37892 * 120.28106 * 359.71721 * 26 25 24 28 28 C 1.39189 * 119.68263 * 359.97438 * 27 26 25 29 29 C 1.47082 * 118.23898 * 308.81543 * 9 8 7 30 30 C 1.46897 * 110.99888 * 169.99561 * 6 5 2 31 31 H 1.08998 * 109.46764 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47081 * 299.99959 * 1 2 3 33 33 H 1.08993 * 109.46836 * 60.00534 * 1 2 3 34 34 H 0.96705 * 113.99504 * 60.00332 * 4 2 1 35 35 H 1.09000 * 109.46825 * 59.99521 * 5 2 1 36 36 H 1.09003 * 109.46635 * 300.00001 * 5 2 1 37 37 H 1.08998 * 109.48777 * 292.70587 * 7 6 5 38 38 H 1.09001 * 109.49541 * 52.78546 * 7 6 5 39 39 H 1.08999 * 109.62685 * 294.11944 * 8 7 6 40 40 H 1.08998 * 109.62917 * 173.53821 * 8 7 6 41 41 H 1.08001 * 125.13246 * 359.92299 * 13 12 10 42 42 H 0.96993 * 119.99740 * 179.97438 * 18 17 15 43 43 H 1.07999 * 120.03210 * 359.92361 * 24 23 14 44 44 H 1.08005 * 119.69290 * 180.12179 * 25 24 23 45 45 H 1.07994 * 119.86005 * 179.69667 * 26 25 24 46 46 H 1.08008 * 120.15867 * 179.97438 * 27 26 25 47 47 H 1.08996 * 109.62735 * 291.47810 * 29 9 8 48 48 H 1.08997 * 109.62854 * 170.89550 * 29 9 8 49 49 H 1.08995 * 109.50091 * 307.22151 * 30 6 5 50 50 H 1.09003 * 109.49172 * 67.29679 * 30 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6735 1.1669 5 6 2.0402 -0.7213 -1.2492 6 7 3.5091 -0.7207 -1.2494 7 6 4.0351 0.6440 -1.3858 8 6 5.5560 0.6227 -1.2004 9 7 6.1268 -0.3600 -2.1341 10 6 7.1449 -0.0270 -2.9521 11 8 7.6833 -0.8804 -3.6318 12 6 7.6045 1.3669 -3.0229 13 6 7.8035 2.2144 -1.9731 14 7 8.2309 3.4202 -2.4314 15 6 8.5243 4.5003 -1.6392 16 1 8.4221 5.5013 -2.0315 17 6 8.9530 4.3068 -0.3314 18 7 9.2784 3.1032 0.0817 19 14 9.0664 5.7584 0.8387 20 1 8.6462 6.9962 0.1342 21 1 8.1754 5.5258 2.0039 22 1 10.4672 5.9070 1.3088 23 6 8.3266 3.4030 -3.8112 24 6 8.7069 4.3551 -4.7499 25 6 8.7143 4.0344 -6.0910 26 6 8.3361 2.7700 -6.5169 27 6 7.9525 1.8135 -5.6007 28 6 7.9468 2.1223 -4.2435 29 6 5.5567 -1.7157 -2.1519 30 6 4.0357 -1.6023 -2.2998 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5137 -0.8900 34 1 1.7211 -1.5952 1.2330 35 1 1.6768 -0.2075 -2.1392 36 1 1.6768 -1.7490 -1.2490 37 1 3.7948 1.0289 -2.3769 38 1 3.5852 1.2848 -0.6274 39 1 5.7961 0.3371 -0.1763 40 1 5.9647 1.6105 -1.4134 41 1 7.6446 1.9652 -0.9343 42 1 9.5780 2.9683 0.9943 43 1 9.0048 5.3422 -4.4284 44 1 9.0124 4.7765 -6.8169 45 1 8.3418 2.5335 -7.5706 46 1 7.6580 0.8295 -5.9346 47 1 5.7968 -2.2261 -1.2192 48 1 5.9659 -2.2740 -2.9939 49 1 3.5863 -2.5907 -2.2044 50 1 3.7955 -1.1861 -3.2782 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075602974.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:15 Heat of formation + Delta-G solvation = -11.836279 kcal Electronic energy + Delta-G solvation = -32673.688049 eV Core-core repulsion = 28473.413347 eV Total energy + Delta-G solvation = -4200.274702 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 357.184 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.51717 -39.51185 -38.18525 -36.69688 -36.28394 -34.05714 -33.31794 -31.70147 -31.14116 -30.72600 -28.89342 -28.29076 -27.63360 -25.52271 -24.53380 -23.68480 -22.27321 -21.72987 -21.28610 -20.61988 -20.16625 -18.34722 -17.72084 -16.89649 -16.39480 -16.15186 -15.65886 -15.49228 -15.09383 -15.02034 -14.92637 -14.60893 -14.41920 -14.37237 -14.25632 -13.61852 -13.55116 -13.11583 -13.01523 -12.74746 -12.72482 -12.57923 -12.29084 -11.99722 -11.92041 -11.83868 -11.59775 -11.43801 -11.33974 -11.24466 -11.16273 -10.97609 -10.74225 -10.70820 -10.63238 -10.41902 -10.11950 -10.04279 -9.34948 -9.08963 -8.65269 -8.49287 -8.04909 -7.28845 -7.03777 -6.72213 -4.53559 2.01790 2.47333 2.86374 2.96364 3.01931 3.22710 3.45607 3.69547 3.72816 4.07053 4.35106 4.49917 4.59756 4.66141 4.85078 4.89751 4.91548 5.03894 5.11730 5.13175 5.27053 5.39776 5.44066 5.46018 5.55201 5.67349 5.70597 5.70927 5.77577 5.77878 5.82303 5.93653 6.00131 6.09912 6.11060 6.24113 6.28966 6.37499 6.64340 6.73247 6.82464 6.90717 6.93590 6.98172 7.00964 7.09295 7.31251 7.43479 7.45506 7.58610 7.77230 7.91465 8.07418 8.26661 8.73663 9.00740 9.19174 10.12387 Molecular weight = 357.18amu Principal moments of inertia in cm(-1) A = 0.008192 B = 0.003628 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3417.015993 B = 7715.568529 C = 9740.859130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.104 3.896 3 H 0.098 0.902 4 O -0.548 6.548 5 C 0.023 3.977 6 N -0.527 5.527 7 C 0.041 3.959 8 C 0.105 3.895 9 N -0.617 5.617 10 C 0.610 3.390 11 O -0.561 6.561 12 C -0.309 4.309 13 C 0.130 3.870 14 N -0.273 5.273 15 C -0.351 4.351 16 H 0.110 0.890 17 C 0.048 3.952 18 N -0.845 5.845 19 Si 0.939 3.061 20 H -0.263 1.263 21 H -0.271 1.271 22 H -0.274 1.274 23 C 0.051 3.949 24 C -0.102 4.102 25 C -0.138 4.138 26 C -0.158 4.158 27 C -0.084 4.084 28 C -0.062 4.062 29 C 0.122 3.878 30 C 0.044 3.956 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.370 0.630 35 H 0.040 0.960 36 H 0.075 0.925 37 H 0.038 0.962 38 H 0.085 0.915 39 H 0.072 0.928 40 H 0.108 0.892 41 H 0.174 0.826 42 H 0.284 0.716 43 H 0.111 0.889 44 H 0.110 0.890 45 H 0.107 0.893 46 H 0.109 0.891 47 H 0.068 0.932 48 H 0.091 0.909 49 H 0.081 0.919 50 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.351 -4.321 0.343 14.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.045 3.955 3 H 0.116 0.884 4 O -0.352 6.352 5 C -0.106 4.106 6 N -0.252 5.252 7 C -0.087 4.087 8 C -0.018 4.018 9 N -0.352 5.352 10 C 0.403 3.597 11 O -0.441 6.441 12 C -0.319 4.319 13 C -0.012 4.012 14 N 0.066 4.934 15 C -0.479 4.479 16 H 0.127 0.873 17 C -0.162 4.162 18 N -0.475 5.475 19 Si 0.763 3.237 20 H -0.187 1.187 21 H -0.196 1.196 22 H -0.199 1.199 23 C -0.057 4.057 24 C -0.122 4.122 25 C -0.158 4.158 26 C -0.178 4.178 27 C -0.103 4.103 28 C -0.068 4.068 29 C -0.002 4.002 30 C -0.085 4.085 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.216 0.784 35 H 0.058 0.942 36 H 0.094 0.906 37 H 0.056 0.944 38 H 0.103 0.897 39 H 0.090 0.910 40 H 0.126 0.874 41 H 0.191 0.809 42 H 0.095 0.905 43 H 0.129 0.871 44 H 0.128 0.872 45 H 0.125 0.875 46 H 0.127 0.873 47 H 0.086 0.914 48 H 0.109 0.891 49 H 0.099 0.901 50 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -13.436 -4.170 0.927 14.098 hybrid contribution -0.415 0.383 -0.214 0.604 sum -13.850 -3.787 0.713 14.376 Atomic orbital electron populations 1.22491 0.96495 1.02466 1.02829 1.21925 0.92008 0.97005 0.84590 0.88380 1.86644 1.77232 1.28493 1.42800 1.22858 0.88704 1.01150 0.97841 1.61895 1.06174 1.10109 1.46994 1.22560 0.96253 0.89446 1.00452 1.22103 0.91424 0.94918 0.93338 1.47970 1.35341 1.11702 1.40139 1.17464 0.77704 0.87322 0.77208 1.90666 1.56667 1.51255 1.45503 1.19322 1.25146 0.94500 0.92976 1.22073 0.96306 0.84674 0.98146 1.39961 1.41106 1.09759 1.02617 1.19937 1.47156 0.86826 0.93954 0.87271 1.25584 0.93605 0.98661 0.98372 1.69837 1.36985 1.21792 1.18935 0.85662 0.78671 0.79927 0.79397 1.18658 1.19627 1.19915 1.18437 1.06930 0.95651 0.84661 1.19936 1.02784 0.97865 0.91612 1.20491 1.04280 0.96756 0.94280 1.20610 1.05012 0.94060 0.98094 1.20304 1.00352 0.98378 0.91229 1.18537 1.03613 0.92501 0.92117 1.21507 0.91058 0.84740 1.02867 1.22496 0.96033 0.97208 0.92745 0.92348 0.91569 0.91704 0.78368 0.94187 0.90618 0.94424 0.89670 0.90962 0.87389 0.80939 0.90548 0.87141 0.87214 0.87456 0.87291 0.91379 0.89058 0.90115 0.94596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.26 9.54 37.16 0.35 -0.90 16 2 C 0.10 0.94 3.46 -26.73 -0.09 0.85 16 3 H 0.10 0.99 6.40 -51.93 -0.33 0.66 16 4 O -0.55 -5.74 13.20 -35.23 -0.47 -6.21 16 5 C 0.02 0.21 4.62 -3.83 -0.02 0.20 16 6 N -0.53 -6.38 4.50 -234.33 -1.05 -7.44 16 7 C 0.04 0.56 5.46 -3.71 -0.02 0.54 16 8 C 0.11 1.73 5.84 -3.60 -0.02 1.71 16 9 N -0.62 -11.18 3.01 -173.91 -0.52 -11.71 16 10 C 0.61 13.58 7.60 -12.74 -0.10 13.49 16 11 O -0.56 -13.84 16.60 5.22 0.09 -13.76 16 12 C -0.31 -7.31 5.56 -103.24 -0.57 -7.88 16 13 C 0.13 3.10 7.41 -16.43 -0.12 2.98 16 14 N -0.27 -6.79 2.87 -59.49 -0.17 -6.96 16 15 C -0.35 -8.56 9.85 -14.91 -0.15 -8.70 16 16 H 0.11 2.53 7.85 -52.48 -0.41 2.12 16 17 C 0.05 1.12 5.33 -17.49 -0.09 1.03 16 18 N -0.84 -20.77 11.21 55.50 0.62 -20.15 16 19 Si 0.94 17.86 29.56 -169.99 -5.03 12.83 16 20 H -0.26 -4.87 7.11 56.52 0.40 -4.47 16 21 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 22 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 23 C 0.05 1.22 6.73 -83.84 -0.56 0.66 16 24 C -0.10 -2.15 9.93 -39.42 -0.39 -2.54 16 25 C -0.14 -2.58 10.02 -39.54 -0.40 -2.98 16 26 C -0.16 -3.00 10.03 -39.55 -0.40 -3.39 16 27 C -0.08 -1.81 10.09 -39.36 -0.40 -2.20 16 28 C -0.06 -1.49 6.36 -104.92 -0.67 -2.16 16 29 C 0.12 1.82 6.58 -3.60 -0.02 1.80 16 30 C 0.04 0.54 5.62 -3.70 -0.02 0.51 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.37 2.59 9.05 45.56 0.41 3.00 16 35 H 0.04 0.37 8.12 -51.93 -0.42 -0.05 16 36 H 0.08 0.60 7.97 -51.93 -0.41 0.18 16 37 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.09 1.07 6.16 -51.93 -0.32 0.75 16 39 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.11 1.98 4.18 -51.93 -0.22 1.76 16 41 H 0.17 4.06 5.60 -52.49 -0.29 3.77 16 42 H 0.28 6.46 8.31 -40.82 -0.34 6.12 16 43 H 0.11 2.16 8.06 -52.49 -0.42 1.73 16 44 H 0.11 1.68 8.06 -52.48 -0.42 1.26 16 45 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 46 H 0.11 2.27 8.06 -52.48 -0.42 1.85 16 47 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 48 H 0.09 1.44 7.11 -51.93 -0.37 1.07 16 49 H 0.08 0.80 7.99 -51.93 -0.41 0.38 16 50 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 400.26 15.07 6.03 6.03 Total: -1.00 -30.29 400.26 -10.75 -41.04 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: -6.57 Total: 13.30 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: -3.69 Total: -6.99 kcal Atomic # 7 Polarization: -45.12 SS G_CDS: -1.13 Total: -46.25 kcal Atomic # 8 Polarization: -19.59 SS G_CDS: -0.38 Total: -19.96 kcal Atomic # 14 Polarization: 17.86 SS G_CDS: -5.03 Total: 12.83 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -30.29 -10.75 -41.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075602974.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.208 kcal (2) G-P(sol) polarization free energy of solvation -30.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds