Wall clock time and date at job start Tue Mar 31 2020 05:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 109.46699 * 2 1 4 4 O 1.42903 * 109.47140 * 119.99396 * 2 1 3 5 5 C 1.52999 * 109.47553 * 239.99704 * 2 1 3 6 6 N 1.46897 * 109.47261 * 179.97438 * 5 2 1 7 7 C 1.46894 * 111.00295 * 294.30509 * 6 5 2 8 8 C 1.53236 * 109.34283 * 172.74660 * 7 6 5 9 9 N 1.47079 * 108.52071 * 53.82692 * 8 7 6 10 10 C 1.34780 * 120.88503 * 128.79781 * 9 8 7 11 11 O 1.21667 * 120.00167 * 173.47142 * 10 9 8 12 12 C 1.46935 * 119.99152 * 353.46825 * 10 9 8 13 13 C 1.36378 * 126.73452 * 43.64030 * 12 10 9 14 14 N 1.35888 * 109.73831 * 179.97438 * 13 12 10 15 15 C 1.37124 * 124.84318 * 179.97438 * 14 13 12 16 16 H 1.08004 * 119.99658 * 207.65831 * 15 14 13 17 17 C 1.38983 * 120.00063 * 27.65429 * 15 14 13 18 18 N 1.31340 * 119.99734 * 10.67748 * 17 15 14 19 19 Si 1.86795 * 119.99896 * 190.67755 * 17 15 14 20 20 H 1.48500 * 109.47527 * 0.02562 * 19 17 15 21 21 H 1.48512 * 109.47015 * 120.00392 * 19 17 15 22 22 H 1.48500 * 109.47187 * 240.00034 * 19 17 15 23 23 C 1.38316 * 110.31442 * 0.02562 * 14 13 12 24 24 C 1.39012 * 133.15793 * 180.02562 * 23 14 13 25 25 C 1.37898 * 119.92823 * 179.37629 * 24 23 14 26 26 C 1.38678 * 120.61447 * 0.44757 * 25 24 23 27 27 C 1.37892 * 120.28106 * 359.71721 * 26 25 24 28 28 C 1.39189 * 119.68263 * 359.97438 * 27 26 25 29 29 C 1.47082 * 118.23898 * 308.81543 * 9 8 7 30 30 C 1.46897 * 110.99888 * 169.99561 * 6 5 2 31 31 H 1.08998 * 109.46764 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47081 * 299.99959 * 1 2 3 33 33 H 1.08993 * 109.46836 * 60.00534 * 1 2 3 34 34 H 0.96705 * 113.99504 * 60.00332 * 4 2 1 35 35 H 1.09000 * 109.46825 * 59.99521 * 5 2 1 36 36 H 1.09003 * 109.46635 * 300.00001 * 5 2 1 37 37 H 1.08998 * 109.48777 * 292.70587 * 7 6 5 38 38 H 1.09001 * 109.49541 * 52.78546 * 7 6 5 39 39 H 1.08999 * 109.62685 * 294.11944 * 8 7 6 40 40 H 1.08998 * 109.62917 * 173.53821 * 8 7 6 41 41 H 1.08001 * 125.13246 * 359.92299 * 13 12 10 42 42 H 0.96993 * 119.99740 * 179.97438 * 18 17 15 43 43 H 1.07999 * 120.03210 * 359.92361 * 24 23 14 44 44 H 1.08005 * 119.69290 * 180.12179 * 25 24 23 45 45 H 1.07994 * 119.86005 * 179.69667 * 26 25 24 46 46 H 1.08008 * 120.15867 * 179.97438 * 27 26 25 47 47 H 1.08996 * 109.62735 * 291.47810 * 29 9 8 48 48 H 1.08997 * 109.62854 * 170.89550 * 29 9 8 49 49 H 1.08995 * 109.50091 * 307.22151 * 30 6 5 50 50 H 1.09003 * 109.49172 * 67.29679 * 30 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6735 1.1669 5 6 2.0402 -0.7213 -1.2492 6 7 3.5091 -0.7207 -1.2494 7 6 4.0351 0.6440 -1.3858 8 6 5.5560 0.6227 -1.2004 9 7 6.1268 -0.3600 -2.1341 10 6 7.1449 -0.0270 -2.9521 11 8 7.6833 -0.8804 -3.6318 12 6 7.6045 1.3669 -3.0229 13 6 7.8035 2.2144 -1.9731 14 7 8.2309 3.4202 -2.4314 15 6 8.5243 4.5003 -1.6392 16 1 8.4221 5.5013 -2.0315 17 6 8.9530 4.3068 -0.3314 18 7 9.2784 3.1032 0.0817 19 14 9.0664 5.7584 0.8387 20 1 8.6462 6.9962 0.1342 21 1 8.1754 5.5258 2.0039 22 1 10.4672 5.9070 1.3088 23 6 8.3266 3.4030 -3.8112 24 6 8.7069 4.3551 -4.7499 25 6 8.7143 4.0344 -6.0910 26 6 8.3361 2.7700 -6.5169 27 6 7.9525 1.8135 -5.6007 28 6 7.9468 2.1223 -4.2435 29 6 5.5567 -1.7157 -2.1519 30 6 4.0357 -1.6023 -2.2998 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5137 -0.8900 34 1 1.7211 -1.5952 1.2330 35 1 1.6768 -0.2075 -2.1392 36 1 1.6768 -1.7490 -1.2490 37 1 3.7948 1.0289 -2.3769 38 1 3.5852 1.2848 -0.6274 39 1 5.7961 0.3371 -0.1763 40 1 5.9647 1.6105 -1.4134 41 1 7.6446 1.9652 -0.9343 42 1 9.5780 2.9683 0.9943 43 1 9.0048 5.3422 -4.4284 44 1 9.0124 4.7765 -6.8169 45 1 8.3418 2.5335 -7.5706 46 1 7.6580 0.8295 -5.9346 47 1 5.7968 -2.2261 -1.2192 48 1 5.9659 -2.2740 -2.9939 49 1 3.5863 -2.5907 -2.2044 50 1 3.7955 -1.1861 -3.2782 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075602974.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:14 Heat of formation + Delta-G solvation = -31.433000 kcal Electronic energy + Delta-G solvation = -32674.537826 eV Core-core repulsion = 28473.413347 eV Total energy + Delta-G solvation = -4201.124479 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 357.184 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.21413 -40.84627 -39.38713 -37.97461 -37.78558 -35.40807 -35.02692 -33.13580 -32.23455 -31.91199 -30.56810 -29.78958 -28.90554 -27.14166 -25.66561 -24.91004 -23.69547 -23.38430 -22.28642 -22.17029 -21.52373 -19.86503 -19.45924 -18.35792 -17.44221 -17.36274 -16.99917 -16.81873 -16.67094 -16.42423 -16.00447 -15.97328 -15.88902 -15.63695 -15.35835 -15.25181 -14.87543 -14.68792 -14.40588 -14.32089 -13.99129 -13.64774 -13.39732 -13.31547 -13.20394 -13.03539 -12.99967 -12.82593 -12.66458 -12.45283 -12.36238 -12.29095 -12.22719 -12.10867 -12.02864 -11.68873 -11.50911 -11.08431 -10.87374 -10.82285 -10.37999 -9.76056 -9.25598 -9.00178 -8.80242 -8.47288 -6.38806 0.32953 0.83638 1.27399 1.39179 1.55133 1.55738 2.01687 2.08861 2.31917 2.76392 2.85500 2.93923 3.21504 3.67091 3.75507 3.75842 3.91761 4.03321 4.08061 4.18287 4.22027 4.28120 4.29376 4.31664 4.34261 4.40143 4.54669 4.59782 4.62558 4.70791 4.71816 4.73696 4.80593 4.82902 4.90621 4.95521 5.01364 5.05564 5.10820 5.20087 5.23114 5.28615 5.31945 5.59452 5.64269 5.74324 5.82096 5.96218 6.01903 6.07271 6.27580 6.45721 6.46454 6.94990 7.02056 7.29840 7.40860 8.36627 Molecular weight = 357.18amu Principal moments of inertia in cm(-1) A = 0.008192 B = 0.003628 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3417.015993 B = 7715.568529 C = 9740.859130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.105 3.895 3 H 0.082 0.918 4 O -0.570 6.570 5 C 0.026 3.974 6 N -0.531 5.531 7 C 0.053 3.947 8 C 0.106 3.894 9 N -0.610 5.610 10 C 0.604 3.396 11 O -0.596 6.596 12 C -0.325 4.325 13 C 0.124 3.876 14 N -0.290 5.290 15 C -0.377 4.377 16 H 0.114 0.886 17 C 0.010 3.990 18 N -0.880 5.880 19 Si 1.011 2.989 20 H -0.253 1.253 21 H -0.265 1.265 22 H -0.274 1.274 23 C 0.022 3.978 24 C -0.118 4.118 25 C -0.123 4.123 26 C -0.144 4.144 27 C -0.104 4.104 28 C -0.092 4.092 29 C 0.116 3.884 30 C 0.053 3.947 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.385 0.615 35 H 0.043 0.957 36 H 0.099 0.901 37 H 0.028 0.972 38 H 0.097 0.903 39 H 0.072 0.928 40 H 0.086 0.914 41 H 0.167 0.833 42 H 0.288 0.712 43 H 0.122 0.878 44 H 0.155 0.845 45 H 0.148 0.852 46 H 0.107 0.893 47 H 0.077 0.923 48 H 0.081 0.919 49 H 0.115 0.885 50 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.927 -3.776 -0.269 16.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.046 3.954 3 H 0.099 0.901 4 O -0.376 6.376 5 C -0.102 4.102 6 N -0.256 5.256 7 C -0.076 4.076 8 C -0.016 4.016 9 N -0.342 5.342 10 C 0.397 3.603 11 O -0.479 6.479 12 C -0.336 4.336 13 C -0.018 4.018 14 N 0.048 4.952 15 C -0.504 4.504 16 H 0.132 0.868 17 C -0.196 4.196 18 N -0.512 5.512 19 Si 0.831 3.169 20 H -0.176 1.176 21 H -0.189 1.189 22 H -0.199 1.199 23 C -0.085 4.085 24 C -0.138 4.138 25 C -0.142 4.142 26 C -0.163 4.163 27 C -0.123 4.123 28 C -0.097 4.097 29 C -0.006 4.006 30 C -0.075 4.075 31 H 0.092 0.908 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.233 0.767 35 H 0.062 0.938 36 H 0.118 0.882 37 H 0.046 0.954 38 H 0.115 0.885 39 H 0.091 0.909 40 H 0.104 0.896 41 H 0.184 0.816 42 H 0.098 0.902 43 H 0.140 0.860 44 H 0.172 0.828 45 H 0.166 0.834 46 H 0.125 0.875 47 H 0.095 0.905 48 H 0.099 0.901 49 H 0.133 0.867 50 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -15.064 -3.640 0.319 15.501 hybrid contribution 0.071 0.170 -0.116 0.218 sum -14.993 -3.471 0.202 15.391 Atomic orbital electron populations 1.22402 0.94515 1.03577 1.02972 1.21903 0.93457 0.96014 0.84059 0.90053 1.86607 1.77806 1.29855 1.43370 1.22943 0.86438 1.02746 0.98083 1.61893 1.08209 1.08748 1.46758 1.22382 0.93997 0.90982 1.00264 1.22087 0.93452 0.93395 0.92710 1.48003 1.34013 1.13297 1.38922 1.17447 0.78482 0.86676 0.77723 1.90620 1.58150 1.51805 1.47300 1.19614 1.25443 0.95212 0.93282 1.21993 0.96912 0.84975 0.97884 1.40159 1.41798 1.10036 1.03220 1.20302 1.48134 0.87112 0.94820 0.86800 1.26545 0.92482 1.01257 0.99351 1.69935 1.37812 1.23882 1.19529 0.84626 0.78489 0.76734 0.77071 1.17628 1.18918 1.19898 1.18944 1.08066 0.96701 0.84835 1.20286 1.03140 0.97969 0.92376 1.21003 1.01800 0.97465 0.93946 1.21089 1.02292 0.93284 0.99597 1.20500 1.01577 0.99290 0.90886 1.18917 1.04684 0.92893 0.93232 1.21746 0.93138 0.82823 1.02900 1.22442 0.93772 0.98948 0.92358 0.90753 0.91925 0.91063 0.76678 0.93830 0.88249 0.95405 0.88531 0.90930 0.89645 0.81620 0.90187 0.86036 0.82755 0.83394 0.87465 0.90463 0.90059 0.86683 0.95462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.00 9.54 71.98 0.69 -1.31 16 2 C 0.11 1.72 3.46 30.60 0.11 1.83 16 3 H 0.08 1.59 6.40 -2.38 -0.02 1.57 16 4 O -0.57 -11.02 13.20 -148.98 -1.97 -12.99 16 5 C 0.03 0.42 4.62 86.30 0.40 0.82 16 6 N -0.53 -12.17 4.50 -895.29 -4.03 -16.20 16 7 C 0.05 1.45 5.46 86.38 0.47 1.92 16 8 C 0.11 3.67 5.84 86.35 0.50 4.17 16 9 N -0.61 -23.07 3.01 -822.36 -2.47 -25.55 16 10 C 0.60 28.44 7.60 86.52 0.66 29.10 16 11 O -0.60 -30.90 16.60 -4.24 -0.07 -30.97 16 12 C -0.33 -16.32 5.56 -18.97 -0.11 -16.42 16 13 C 0.12 6.32 7.41 83.63 0.62 6.94 16 14 N -0.29 -15.10 2.87 -342.12 -0.98 -16.08 16 15 C -0.38 -18.96 9.85 84.04 0.83 -18.14 16 16 H 0.11 5.40 7.85 -2.91 -0.02 5.37 16 17 C 0.01 0.49 5.33 84.94 0.45 0.94 16 18 N -0.88 -44.90 11.21 21.66 0.24 -44.65 16 19 Si 1.01 36.77 29.56 68.60 2.03 38.79 16 20 H -0.25 -8.71 7.11 99.48 0.71 -8.00 16 21 H -0.26 -9.26 7.11 99.48 0.71 -8.55 16 22 H -0.27 -9.89 7.11 99.48 0.71 -9.19 16 23 C 0.02 1.07 6.73 38.83 0.26 1.34 16 24 C -0.12 -4.91 9.93 22.37 0.22 -4.68 16 25 C -0.12 -4.25 10.02 22.29 0.22 -4.03 16 26 C -0.14 -5.10 10.03 22.29 0.22 -4.87 16 27 C -0.10 -4.50 10.09 22.42 0.23 -4.27 16 28 C -0.09 -4.57 6.36 -20.06 -0.13 -4.70 16 29 C 0.12 3.50 6.58 86.35 0.57 4.07 16 30 C 0.05 1.23 5.62 86.38 0.49 1.71 16 31 H 0.07 0.61 8.14 -2.39 -0.02 0.60 16 32 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.38 4.53 9.05 -74.05 -0.67 3.86 16 35 H 0.04 0.71 8.12 -2.39 -0.02 0.70 16 36 H 0.10 1.20 7.97 -2.39 -0.02 1.18 16 37 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.10 2.44 6.16 -2.39 -0.01 2.43 16 39 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 40 H 0.09 3.38 4.18 -2.39 -0.01 3.37 16 41 H 0.17 8.43 5.60 -2.91 -0.02 8.41 16 42 H 0.29 13.53 8.31 -92.71 -0.77 12.76 16 43 H 0.12 4.67 8.06 -2.91 -0.02 4.64 16 44 H 0.15 3.97 8.06 -2.91 -0.02 3.95 16 45 H 0.15 4.03 8.06 -2.91 -0.02 4.01 16 46 H 0.11 4.58 8.06 -2.91 -0.02 4.55 16 47 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 48 H 0.08 2.63 7.11 -2.39 -0.02 2.61 16 49 H 0.12 1.91 7.99 -2.39 -0.02 1.89 16 50 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 Total: -1.00 -69.27 400.26 -0.25 -69.52 By element: Atomic # 1 Polarization: 43.42 SS G_CDS: 0.30 Total: 43.71 kcal Atomic # 6 Polarization: -12.29 SS G_CDS: 6.70 Total: -5.59 kcal Atomic # 7 Polarization: -95.24 SS G_CDS: -7.24 Total: -102.48 kcal Atomic # 8 Polarization: -41.91 SS G_CDS: -2.04 Total: -43.95 kcal Atomic # 14 Polarization: 36.77 SS G_CDS: 2.03 Total: 38.79 kcal Total: -69.27 -0.25 -69.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075602974.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.082 kcal (2) G-P(sol) polarization free energy of solvation -69.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds