Wall clock time and date at job start Tue Mar 31 2020 05:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 114.00223 * 2 1 4 4 C 1.52999 * 109.47267 * 179.97438 * 3 2 1 5 5 N 1.46494 * 109.47138 * 179.97438 * 4 3 2 6 6 C 1.36802 * 125.07610 * 264.97678 * 5 4 3 7 7 C 1.34238 * 109.93910 * 180.02562 * 6 5 4 8 8 C 1.46497 * 107.02127 * 0.02562 * 7 6 5 9 9 C 1.39654 * 133.92654 * 179.97438 * 8 7 6 10 10 C 1.38184 * 119.58950 * 180.02562 * 9 8 7 11 11 N 1.40179 * 119.88014 * 179.97438 * 10 9 8 12 12 C 1.34771 * 119.99771 * 140.91353 * 11 10 9 13 13 O 1.21598 * 120.00013 * 4.21814 * 12 11 10 14 14 N 1.34780 * 120.00245 * 184.21572 * 12 11 10 15 15 C 1.46498 * 119.99743 * 7.67527 * 14 12 11 16 16 C 1.50709 * 109.46795 * 90.00015 * 15 14 12 17 17 H 1.07992 * 119.99725 * 0.02562 * 16 15 14 18 18 C 1.37876 * 119.99605 * 179.97438 * 16 15 14 19 19 N 1.31509 * 120.00523 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99574 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47223 * 60.00173 * 20 18 16 22 22 H 1.48502 * 109.46821 * 179.97438 * 20 18 16 23 23 H 1.48493 * 109.47324 * 299.99832 * 20 18 16 24 24 C 1.46493 * 120.00354 * 187.67922 * 14 12 11 25 25 C 1.53006 * 117.49887 * 14.44509 * 24 14 12 26 26 C 1.52991 * 60.00166 * 252.51174 * 25 24 14 27 27 C 1.39389 * 120.23693 * 0.28050 * 10 9 8 28 28 C 1.37649 * 120.60870 * 359.43890 * 27 10 9 29 29 C 1.37904 * 125.07032 * 84.99809 * 5 4 3 30 30 H 1.09001 * 109.47361 * 299.99884 * 1 2 3 31 31 H 1.09004 * 109.47106 * 59.99874 * 1 2 3 32 32 H 1.08997 * 109.47147 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47076 * 59.99958 * 3 2 1 34 34 H 1.09003 * 109.46808 * 300.00389 * 3 2 1 35 35 H 1.09008 * 109.46846 * 60.00064 * 4 3 2 36 36 H 1.08998 * 109.47152 * 299.99926 * 4 3 2 37 37 H 1.07999 * 125.03195 * 0.02562 * 6 5 4 38 38 H 1.08002 * 126.49130 * 179.97438 * 7 6 5 39 39 H 1.07993 * 120.20414 * 0.02562 * 9 8 7 40 40 H 0.96996 * 119.99978 * 320.63865 * 11 10 9 41 41 H 1.08995 * 109.47273 * 210.00035 * 15 14 12 42 42 H 1.09004 * 109.47486 * 330.00633 * 15 14 12 43 43 H 0.96999 * 120.00672 * 179.97438 * 19 18 16 44 44 H 1.08996 * 115.55667 * 160.15485 * 24 14 12 45 45 H 1.08997 * 117.49968 * 0.02562 * 25 24 14 46 46 H 1.09006 * 117.49716 * 145.01696 * 25 24 14 47 47 H 1.09005 * 117.50113 * 252.51193 * 26 25 24 48 48 H 1.09000 * 117.51954 * 107.48341 * 26 25 24 49 49 H 1.08001 * 119.69949 * 179.72356 * 27 10 9 50 50 H 1.07994 * 119.99655 * 180.25620 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 4.1314 2.5229 0.0000 6 6 4.5411 3.2005 -1.1155 7 6 5.0405 4.3967 -0.7669 8 6 4.9434 4.4934 0.6917 9 6 5.2913 5.4742 1.6230 10 6 5.0628 5.2504 2.9673 11 7 5.4102 6.2305 3.9074 12 6 4.6059 6.4672 4.9626 13 8 3.6192 5.7794 5.1413 14 7 4.8952 7.4662 5.8198 15 6 5.9831 8.3993 5.5167 16 6 5.4398 9.5671 4.7341 17 1 4.3892 9.6099 4.4877 18 6 6.2838 10.5811 4.3338 19 7 7.5628 10.5297 4.6352 20 14 5.6102 12.0289 3.3644 21 1 4.5719 12.7226 4.1681 22 1 6.7127 12.9754 3.0581 23 1 5.0105 11.5400 2.0970 24 6 4.1220 7.6188 7.0547 25 6 3.2411 6.4446 7.4863 26 6 2.6004 7.7167 6.9279 27 6 4.4940 4.0510 3.3924 28 6 4.1424 3.0804 2.4818 29 6 4.3633 3.2875 1.1240 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.6887 1.8464 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 3.8574 0.6435 -0.8892 36 1 3.8567 0.6439 0.8908 37 1 4.4729 2.8282 -2.1270 38 1 5.4393 5.1458 -1.4350 39 1 5.7362 6.4018 1.2945 40 1 6.2313 6.7356 3.8005 41 1 6.4234 8.7586 6.4468 42 1 6.7452 7.8899 4.9269 43 1 8.1567 11.2429 4.3533 44 1 4.6003 8.2046 7.8396 45 1 3.2372 5.5584 6.8517 46 1 3.1400 6.2576 8.5554 47 1 2.0777 8.3668 7.6295 48 1 2.1747 7.6681 5.9256 49 1 4.3233 3.8834 4.4456 50 1 3.6985 2.1565 2.8218 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076070364.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:48 Heat of formation + Delta-G solvation = 42.174417 kcal Electronic energy + Delta-G solvation = -31540.661838 eV Core-core repulsion = 27342.729216 eV Total energy + Delta-G solvation = -4197.932622 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 357.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.26453 -40.03413 -38.34107 -37.46198 -35.64941 -34.53202 -33.47740 -33.00212 -32.02657 -30.22400 -28.41969 -28.02100 -27.04326 -26.34539 -23.64225 -23.03835 -22.59893 -22.43766 -21.74596 -20.94479 -20.10445 -19.23287 -17.44315 -17.16993 -16.91450 -16.51533 -16.40590 -16.26063 -15.82631 -15.65283 -14.99502 -14.64039 -14.51604 -14.40871 -14.21217 -14.09472 -13.55512 -13.34349 -13.05945 -12.94302 -12.56916 -12.52943 -12.39203 -12.33386 -12.21687 -11.80656 -11.74216 -11.60474 -11.32441 -11.17211 -10.88351 -10.74765 -10.70423 -10.55059 -10.24282 -10.14113 -9.67753 -9.62441 -9.58691 -9.18443 -8.94618 -8.57686 -7.75636 -7.54377 -7.16122 -6.19791 -4.27403 1.32100 1.80451 2.52032 2.80690 3.25088 3.28434 3.29409 3.35931 3.57370 3.71818 4.22361 4.29707 4.37037 4.51581 4.60408 4.69288 4.78717 4.89678 4.90981 4.94206 4.97878 5.13014 5.15210 5.21837 5.26449 5.35803 5.49863 5.56152 5.61863 5.71128 5.72241 5.74109 5.83705 6.05838 6.22774 6.26474 6.32224 6.42406 6.57140 6.63057 6.74734 6.76666 6.82002 6.90671 6.94927 7.06725 7.17203 7.33878 7.45133 7.55286 7.75582 7.78833 8.02028 8.55936 8.84097 9.26812 9.41483 10.86125 Molecular weight = 357.18amu Principal moments of inertia in cm(-1) A = 0.010846 B = 0.002595 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2581.078050 B =10787.955786 C =12366.194635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.391 6.391 3 C 0.043 3.957 4 C 0.118 3.882 5 N -0.487 5.487 6 C 0.044 3.956 7 C -0.199 4.199 8 C -0.089 4.089 9 C -0.104 4.104 10 C 0.158 3.842 11 N -0.684 5.684 12 C 0.712 3.288 13 O -0.598 6.598 14 N -0.585 5.585 15 C 0.244 3.756 16 C -0.535 4.535 17 H 0.061 0.939 18 C 0.065 3.935 19 N -0.893 5.893 20 Si 0.898 3.102 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.275 1.275 24 C 0.106 3.894 25 C -0.203 4.203 26 C -0.189 4.189 27 C -0.086 4.086 28 C -0.120 4.120 29 C 0.080 3.920 30 H 0.044 0.956 31 H 0.042 0.958 32 H 0.089 0.911 33 H 0.059 0.941 34 H 0.055 0.945 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.164 0.836 38 H 0.145 0.855 39 H 0.128 0.872 40 H 0.414 0.586 41 H 0.040 0.960 42 H 0.031 0.969 43 H 0.266 0.734 44 H 0.123 0.877 45 H 0.137 0.863 46 H 0.078 0.922 47 H 0.085 0.915 48 H 0.093 0.907 49 H 0.139 0.861 50 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.031 -17.592 -8.340 20.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.309 6.309 3 C -0.035 4.035 4 C -0.005 4.005 5 N -0.173 5.173 6 C -0.080 4.080 7 C -0.225 4.225 8 C -0.094 4.094 9 C -0.126 4.126 10 C 0.062 3.938 11 N -0.333 5.333 12 C 0.416 3.584 13 O -0.479 6.479 14 N -0.316 5.316 15 C 0.124 3.876 16 C -0.574 4.574 17 H 0.080 0.920 18 C -0.138 4.138 19 N -0.531 5.531 20 Si 0.725 3.275 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.201 1.201 24 C 0.000 4.000 25 C -0.241 4.241 26 C -0.228 4.228 27 C -0.107 4.107 28 C -0.142 4.142 29 C -0.024 4.024 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.107 0.893 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.114 0.886 36 H 0.111 0.889 37 H 0.181 0.819 38 H 0.163 0.837 39 H 0.146 0.854 40 H 0.254 0.746 41 H 0.058 0.942 42 H 0.049 0.951 43 H 0.076 0.924 44 H 0.141 0.859 45 H 0.155 0.845 46 H 0.096 0.904 47 H 0.103 0.897 48 H 0.111 0.889 49 H 0.157 0.843 50 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -7.528 -18.357 -8.185 21.462 hybrid contribution -0.175 1.666 -0.678 1.807 sum -7.703 -16.690 -8.863 20.407 Atomic orbital electron populations 1.22776 0.80221 1.02966 1.00389 1.87783 1.20374 1.27215 1.95575 1.22911 0.93786 0.85147 1.01607 1.21364 0.91558 0.82354 1.05183 1.43680 1.53893 1.14744 1.05002 1.21693 1.02038 0.93353 0.90884 1.21656 1.09644 0.98120 0.93059 1.18864 1.03336 0.93887 0.93294 1.20305 1.03432 0.98762 0.90111 1.17234 1.00314 0.88500 0.87724 1.42879 1.26108 1.39675 1.24668 1.15808 0.82107 0.80968 0.79553 1.90648 1.28929 1.53208 1.75136 1.46793 1.36612 1.28906 1.19315 1.19353 0.83755 0.87249 0.97267 1.21467 0.95555 1.05146 1.35213 0.92031 1.24935 0.94732 0.98227 0.95908 1.69900 1.03334 1.33906 1.45977 0.86548 0.78511 0.81890 0.80507 1.20126 1.21164 1.20075 1.21303 0.88734 1.02186 0.87794 1.23883 1.03684 0.96205 1.00323 1.23134 0.96674 1.00505 1.02443 1.20933 0.98676 0.90878 1.00230 1.19803 1.05208 1.00206 0.88948 1.18225 1.03788 0.92211 0.88213 0.93692 0.93908 0.89299 0.92314 0.92659 0.88629 0.88878 0.81864 0.83709 0.85434 0.74644 0.94225 0.95126 0.92426 0.85889 0.84516 0.90361 0.89671 0.88880 0.84302 0.86562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.39 -3.61 10.70 -35.23 -0.38 -3.99 16 3 C 0.04 0.39 6.26 37.16 0.23 0.62 16 4 C 0.12 1.03 6.37 -4.05 -0.03 1.00 16 5 N -0.49 -5.53 2.78 -114.39 -0.32 -5.85 16 6 C 0.04 0.46 11.27 -16.74 -0.19 0.27 16 7 C -0.20 -2.49 11.08 -37.67 -0.42 -2.90 16 8 C -0.09 -1.36 6.37 -105.14 -0.67 -2.03 16 9 C -0.10 -1.74 10.02 -39.07 -0.39 -2.13 16 10 C 0.16 2.83 6.21 -83.63 -0.52 2.31 16 11 N -0.68 -13.21 5.21 -14.20 -0.07 -13.28 16 12 C 0.71 15.00 7.90 -86.92 -0.69 14.32 16 13 O -0.60 -12.91 9.86 5.28 0.05 -12.86 16 14 N -0.59 -12.43 2.82 -173.17 -0.49 -12.91 16 15 C 0.24 5.70 5.17 -5.19 -0.03 5.67 16 16 C -0.54 -13.93 9.39 -34.44 -0.32 -14.25 16 17 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 18 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 19 N -0.89 -24.22 13.29 55.43 0.74 -23.48 16 20 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 22 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 24 C 0.11 2.01 6.61 -67.93 -0.45 1.56 16 25 C -0.20 -3.51 9.62 -26.73 -0.26 -3.77 16 26 C -0.19 -3.42 9.89 -26.73 -0.26 -3.68 16 27 C -0.09 -1.44 8.64 -39.37 -0.34 -1.78 16 28 C -0.12 -1.75 9.97 -39.47 -0.39 -2.14 16 29 C 0.08 1.14 6.81 -83.91 -0.57 0.57 16 30 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.10 0.65 8.12 -51.92 -0.42 0.23 16 36 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.16 1.10 8.06 -52.49 -0.42 0.68 16 38 H 0.15 1.54 8.06 -52.49 -0.42 1.12 16 39 H 0.13 2.06 8.06 -52.49 -0.42 1.64 16 40 H 0.41 7.95 6.46 -40.82 -0.26 7.69 16 41 H 0.04 0.97 8.04 -51.93 -0.42 0.55 16 42 H 0.03 0.72 6.06 -51.93 -0.31 0.41 16 43 H 0.27 6.91 8.31 -40.82 -0.34 6.58 16 44 H 0.12 2.16 8.10 -51.93 -0.42 1.74 16 45 H 0.14 2.64 5.15 -52.36 -0.27 2.37 16 46 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 47 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 48 H 0.09 1.91 7.69 -51.93 -0.40 1.51 16 49 H 0.14 2.43 6.54 -52.49 -0.34 2.08 16 50 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 LS Contribution 413.22 15.07 6.23 6.23 Total: -1.00 -30.07 413.22 -11.01 -41.08 By element: Atomic # 1 Polarization: 20.23 SS G_CDS: -7.47 Total: 12.76 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: -4.28 Total: -3.42 kcal Atomic # 7 Polarization: -55.39 SS G_CDS: -0.14 Total: -55.53 kcal Atomic # 8 Polarization: -16.52 SS G_CDS: -0.33 Total: -16.85 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -30.07 -11.01 -41.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076070364.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.256 kcal (2) G-P(sol) polarization free energy of solvation -30.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds