Wall clock time and date at job start Tue Mar 31 2020 05:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 114.00223 * 2 1 4 4 C 1.52999 * 109.47267 * 179.97438 * 3 2 1 5 5 N 1.46494 * 109.47138 * 179.97438 * 4 3 2 6 6 C 1.36802 * 125.07610 * 264.97678 * 5 4 3 7 7 C 1.34238 * 109.93910 * 180.02562 * 6 5 4 8 8 C 1.46497 * 107.02127 * 0.02562 * 7 6 5 9 9 C 1.39654 * 133.92654 * 179.97438 * 8 7 6 10 10 C 1.38184 * 119.58950 * 180.02562 * 9 8 7 11 11 N 1.40179 * 119.88014 * 179.97438 * 10 9 8 12 12 C 1.34771 * 119.99771 * 140.91353 * 11 10 9 13 13 O 1.21598 * 120.00013 * 4.21814 * 12 11 10 14 14 N 1.34780 * 120.00245 * 184.21572 * 12 11 10 15 15 C 1.46498 * 119.99743 * 7.67527 * 14 12 11 16 16 C 1.50709 * 109.46795 * 90.00015 * 15 14 12 17 17 H 1.07992 * 119.99725 * 0.02562 * 16 15 14 18 18 C 1.37876 * 119.99605 * 179.97438 * 16 15 14 19 19 N 1.31509 * 120.00523 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99574 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47223 * 60.00173 * 20 18 16 22 22 H 1.48502 * 109.46821 * 179.97438 * 20 18 16 23 23 H 1.48493 * 109.47324 * 299.99832 * 20 18 16 24 24 C 1.46493 * 120.00354 * 187.67922 * 14 12 11 25 25 C 1.53006 * 117.49887 * 14.44509 * 24 14 12 26 26 C 1.52991 * 60.00166 * 252.51174 * 25 24 14 27 27 C 1.39389 * 120.23693 * 0.28050 * 10 9 8 28 28 C 1.37649 * 120.60870 * 359.43890 * 27 10 9 29 29 C 1.37904 * 125.07032 * 84.99809 * 5 4 3 30 30 H 1.09001 * 109.47361 * 299.99884 * 1 2 3 31 31 H 1.09004 * 109.47106 * 59.99874 * 1 2 3 32 32 H 1.08997 * 109.47147 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47076 * 59.99958 * 3 2 1 34 34 H 1.09003 * 109.46808 * 300.00389 * 3 2 1 35 35 H 1.09008 * 109.46846 * 60.00064 * 4 3 2 36 36 H 1.08998 * 109.47152 * 299.99926 * 4 3 2 37 37 H 1.07999 * 125.03195 * 0.02562 * 6 5 4 38 38 H 1.08002 * 126.49130 * 179.97438 * 7 6 5 39 39 H 1.07993 * 120.20414 * 0.02562 * 9 8 7 40 40 H 0.96996 * 119.99978 * 320.63865 * 11 10 9 41 41 H 1.08995 * 109.47273 * 210.00035 * 15 14 12 42 42 H 1.09004 * 109.47486 * 330.00633 * 15 14 12 43 43 H 0.96999 * 120.00672 * 179.97438 * 19 18 16 44 44 H 1.08996 * 115.55667 * 160.15485 * 24 14 12 45 45 H 1.08997 * 117.49968 * 0.02562 * 25 24 14 46 46 H 1.09006 * 117.49716 * 145.01696 * 25 24 14 47 47 H 1.09005 * 117.50113 * 252.51193 * 26 25 24 48 48 H 1.09000 * 117.51954 * 107.48341 * 26 25 24 49 49 H 1.08001 * 119.69949 * 179.72356 * 27 10 9 50 50 H 1.07994 * 119.99655 * 180.25620 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 4.1314 2.5229 0.0000 6 6 4.5411 3.2005 -1.1155 7 6 5.0405 4.3967 -0.7669 8 6 4.9434 4.4934 0.6917 9 6 5.2913 5.4742 1.6230 10 6 5.0628 5.2504 2.9673 11 7 5.4102 6.2305 3.9074 12 6 4.6059 6.4672 4.9626 13 8 3.6192 5.7794 5.1413 14 7 4.8952 7.4662 5.8198 15 6 5.9831 8.3993 5.5167 16 6 5.4398 9.5671 4.7341 17 1 4.3892 9.6099 4.4877 18 6 6.2838 10.5811 4.3338 19 7 7.5628 10.5297 4.6352 20 14 5.6102 12.0289 3.3644 21 1 4.5719 12.7226 4.1681 22 1 6.7127 12.9754 3.0581 23 1 5.0105 11.5400 2.0970 24 6 4.1220 7.6188 7.0547 25 6 3.2411 6.4446 7.4863 26 6 2.6004 7.7167 6.9279 27 6 4.4940 4.0510 3.3924 28 6 4.1424 3.0804 2.4818 29 6 4.3633 3.2875 1.1240 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.6887 1.8464 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 3.8574 0.6435 -0.8892 36 1 3.8567 0.6439 0.8908 37 1 4.4729 2.8282 -2.1270 38 1 5.4393 5.1458 -1.4350 39 1 5.7362 6.4018 1.2945 40 1 6.2313 6.7356 3.8005 41 1 6.4234 8.7586 6.4468 42 1 6.7452 7.8899 4.9269 43 1 8.1567 11.2429 4.3533 44 1 4.6003 8.2046 7.8396 45 1 3.2372 5.5584 6.8517 46 1 3.1400 6.2576 8.5554 47 1 2.0777 8.3668 7.6295 48 1 2.1747 7.6681 5.9256 49 1 4.3233 3.8834 4.4456 50 1 3.6985 2.1565 2.8218 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076070364.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:47 Heat of formation + Delta-G solvation = 27.247297 kcal Electronic energy + Delta-G solvation = -31541.309127 eV Core-core repulsion = 27342.729216 eV Total energy + Delta-G solvation = -4198.579910 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 357.184 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.33550 -41.55508 -39.12213 -38.66698 -37.06623 -36.23865 -34.79447 -34.27391 -33.72383 -31.28623 -29.50585 -29.18983 -28.77424 -27.01284 -25.03283 -24.53261 -23.85233 -23.61967 -23.17887 -22.22151 -21.10674 -20.69605 -18.76216 -18.64704 -18.25391 -18.10638 -17.28978 -17.18775 -16.92268 -16.54452 -16.37454 -16.28623 -16.09703 -15.87092 -15.14780 -15.01211 -14.75619 -14.64493 -14.38265 -14.27325 -13.92802 -13.85001 -13.70383 -13.44698 -13.39518 -13.26307 -12.97451 -12.68066 -12.56301 -12.45569 -12.39983 -12.29070 -12.16855 -12.04954 -11.85523 -11.46671 -11.16472 -10.84695 -10.75727 -10.69042 -10.54510 -10.36443 -9.23156 -8.82986 -8.39979 -8.20542 -6.36636 0.16800 0.56659 1.40241 1.40792 1.48675 1.64709 1.78624 1.85040 2.16058 2.38733 2.86485 2.93080 2.97555 3.08113 3.21328 3.68170 3.78469 3.94517 3.98919 4.02572 4.11350 4.15285 4.24641 4.28462 4.31882 4.44609 4.45746 4.48436 4.55323 4.67722 4.70068 4.73334 4.77749 4.81449 4.88280 4.91342 4.99885 5.07766 5.14459 5.16624 5.27730 5.42419 5.49018 5.60824 5.67319 5.81124 5.90284 5.96425 6.02000 6.03032 6.16161 6.30031 6.44703 6.65386 7.01012 7.35069 7.65505 8.82224 Molecular weight = 357.18amu Principal moments of inertia in cm(-1) A = 0.010846 B = 0.002595 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2581.078050 B =10787.955786 C =12366.194635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.404 6.404 3 C 0.048 3.952 4 C 0.116 3.884 5 N -0.482 5.482 6 C 0.071 3.929 7 C -0.227 4.227 8 C -0.106 4.106 9 C -0.116 4.116 10 C 0.132 3.868 11 N -0.683 5.683 12 C 0.705 3.295 13 O -0.607 6.607 14 N -0.591 5.591 15 C 0.258 3.742 16 C -0.544 4.544 17 H 0.044 0.956 18 C 0.025 3.975 19 N -0.916 5.916 20 Si 0.954 3.046 21 H -0.274 1.274 22 H -0.277 1.277 23 H -0.276 1.276 24 C 0.081 3.919 25 C -0.182 4.182 26 C -0.187 4.187 27 C -0.105 4.105 28 C -0.109 4.109 29 C 0.071 3.929 30 H 0.042 0.958 31 H 0.052 0.948 32 H 0.104 0.896 33 H 0.041 0.959 34 H 0.062 0.938 35 H 0.125 0.875 36 H 0.094 0.906 37 H 0.211 0.789 38 H 0.159 0.841 39 H 0.122 0.878 40 H 0.411 0.589 41 H 0.029 0.971 42 H 0.026 0.974 43 H 0.269 0.731 44 H 0.137 0.863 45 H 0.116 0.884 46 H 0.113 0.887 47 H 0.113 0.887 48 H 0.063 0.937 49 H 0.125 0.875 50 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.032 -19.021 -10.091 22.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.323 6.323 3 C -0.030 4.030 4 C -0.005 4.005 5 N -0.167 5.167 6 C -0.053 4.053 7 C -0.251 4.251 8 C -0.112 4.112 9 C -0.138 4.138 10 C 0.037 3.963 11 N -0.332 5.332 12 C 0.408 3.592 13 O -0.489 6.489 14 N -0.322 5.322 15 C 0.137 3.863 16 C -0.583 4.583 17 H 0.062 0.938 18 C -0.176 4.176 19 N -0.555 5.555 20 Si 0.779 3.221 21 H -0.199 1.199 22 H -0.202 1.202 23 H -0.202 1.202 24 C -0.024 4.024 25 C -0.219 4.219 26 C -0.226 4.226 27 C -0.126 4.126 28 C -0.130 4.130 29 C -0.034 4.034 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.123 0.877 33 H 0.060 0.940 34 H 0.080 0.920 35 H 0.143 0.857 36 H 0.113 0.887 37 H 0.228 0.772 38 H 0.177 0.823 39 H 0.140 0.860 40 H 0.249 0.751 41 H 0.047 0.953 42 H 0.044 0.956 43 H 0.078 0.922 44 H 0.155 0.845 45 H 0.134 0.866 46 H 0.131 0.869 47 H 0.131 0.869 48 H 0.081 0.919 49 H 0.143 0.857 50 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -8.550 -19.822 -9.947 23.769 hybrid contribution 0.071 1.958 -0.249 1.975 sum -8.479 -17.864 -10.196 22.248 Atomic orbital electron populations 1.22957 0.79051 1.04204 1.00757 1.87759 1.21694 1.27173 1.95626 1.22813 0.93899 0.85137 1.01120 1.21578 0.91302 0.80904 1.06758 1.43919 1.53113 1.15409 1.04261 1.22409 0.98636 0.92026 0.92223 1.21925 1.11612 0.99927 0.91661 1.19236 1.03175 0.93880 0.94875 1.20342 1.04046 0.99304 0.90101 1.17456 1.02111 0.88802 0.87942 1.42853 1.25702 1.39978 1.24655 1.15968 0.82309 0.80946 0.79933 1.90643 1.29313 1.53468 1.75500 1.46772 1.36533 1.28616 1.20296 1.19021 0.84214 0.86912 0.96175 1.21570 0.94726 1.06267 1.35688 0.93781 1.25577 0.94967 1.00351 0.96659 1.69974 1.04104 1.34686 1.46711 0.85672 0.78074 0.79220 0.79089 1.19915 1.20241 1.20163 1.21648 0.89175 1.04126 0.87493 1.23803 1.01700 0.94640 1.01806 1.23113 0.95989 1.01817 1.01661 1.20821 1.00307 0.91456 1.00032 1.19948 1.03856 1.00195 0.89020 1.18300 1.03659 0.92583 0.88903 0.93914 0.92965 0.87723 0.94047 0.91966 0.85727 0.88735 0.77211 0.82322 0.85980 0.75082 0.95313 0.95595 0.92179 0.84524 0.86581 0.86911 0.86899 0.91858 0.85696 0.84356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 113.37 1.25 1.55 16 2 O -0.40 -6.51 10.70 -148.98 -1.59 -8.10 16 3 C 0.05 0.75 6.26 71.98 0.45 1.20 16 4 C 0.12 1.65 6.37 86.38 0.55 2.20 16 5 N -0.48 -9.62 2.78 -515.82 -1.44 -11.05 16 6 C 0.07 1.23 11.27 83.00 0.94 2.17 16 7 C -0.23 -5.25 11.08 23.51 0.26 -4.99 16 8 C -0.11 -3.25 6.37 -20.20 -0.13 -3.38 16 9 C -0.12 -4.08 10.02 22.60 0.23 -3.85 16 10 C 0.13 5.01 6.21 38.07 0.24 5.24 16 11 N -0.68 -28.14 5.21 -317.10 -1.65 -29.79 16 12 C 0.71 31.23 7.90 179.06 1.41 32.64 16 13 O -0.61 -27.45 9.86 -4.02 -0.04 -27.49 16 14 N -0.59 -26.07 2.82 -820.04 -2.31 -28.38 16 15 C 0.26 12.52 5.17 85.64 0.44 12.96 16 16 C -0.54 -29.08 9.39 25.60 0.24 -28.84 16 17 H 0.04 2.47 7.81 -2.91 -0.02 2.45 16 18 C 0.03 1.34 5.46 84.66 0.46 1.80 16 19 N -0.92 -50.24 13.29 21.45 0.28 -49.96 16 20 Si 0.95 42.81 29.54 68.60 2.03 44.84 16 21 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 22 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 23 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 24 C 0.08 3.09 6.61 45.00 0.30 3.39 16 25 C -0.18 -6.19 9.62 30.59 0.29 -5.89 16 26 C -0.19 -6.76 9.89 30.59 0.30 -6.46 16 27 C -0.10 -3.68 8.64 22.41 0.19 -3.49 16 28 C -0.11 -3.18 9.97 22.34 0.22 -2.95 16 29 C 0.07 1.96 6.81 38.98 0.27 2.23 16 30 H 0.04 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.05 0.49 8.14 -2.38 -0.02 0.48 16 32 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.12 1.12 8.12 -2.38 -0.02 1.10 16 36 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.21 1.62 8.06 -2.91 -0.02 1.59 16 38 H 0.16 3.11 8.06 -2.91 -0.02 3.09 16 39 H 0.12 4.23 8.06 -2.91 -0.02 4.21 16 40 H 0.41 16.96 6.46 -92.71 -0.60 16.36 16 41 H 0.03 1.45 8.04 -2.39 -0.02 1.43 16 42 H 0.03 1.29 6.06 -2.38 -0.01 1.27 16 43 H 0.27 14.03 8.31 -92.71 -0.77 13.25 16 44 H 0.14 4.78 8.10 -2.39 -0.02 4.76 16 45 H 0.12 4.54 5.15 -9.12 -0.05 4.50 16 46 H 0.11 3.05 8.14 -2.38 -0.02 3.03 16 47 H 0.11 3.40 8.14 -2.38 -0.02 3.38 16 48 H 0.06 2.67 7.69 -2.39 -0.02 2.65 16 49 H 0.13 4.65 6.54 -2.91 -0.02 4.63 16 50 H 0.14 3.28 8.06 -2.91 -0.02 3.25 16 Total: -1.00 -66.60 413.22 3.52 -63.08 By element: Atomic # 1 Polarization: 41.00 SS G_CDS: 0.32 Total: 41.32 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: 7.92 Total: 5.53 kcal Atomic # 7 Polarization: -114.07 SS G_CDS: -5.11 Total: -119.18 kcal Atomic # 8 Polarization: -33.96 SS G_CDS: -1.63 Total: -35.60 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -66.60 3.52 -63.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076070364.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.332 kcal (2) G-P(sol) polarization free energy of solvation -66.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds