Wall clock time and date at job start Tue Mar 31 2020 05:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 119.99845 * 2 1 4 4 H 1.48504 * 109.46992 * 270.00138 * 3 2 1 5 5 H 1.48503 * 109.47262 * 29.99669 * 3 2 1 6 6 H 1.48500 * 109.47481 * 149.99906 * 3 2 1 7 7 C 1.37873 * 120.00214 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99861 * 0.02562 * 7 2 1 9 9 C 1.50706 * 119.99898 * 179.97438 * 7 2 1 10 10 N 1.46505 * 109.46824 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99671 * 90.00759 * 10 9 7 12 12 O 1.21581 * 119.99766 * 177.36179 * 11 10 9 13 13 N 1.34778 * 119.99775 * 357.35464 * 11 10 9 14 14 C 1.39947 * 119.99633 * 184.12089 * 13 11 10 15 15 C 1.38947 * 120.02933 * 325.05411 * 14 13 11 16 16 C 1.38147 * 120.07147 * 179.72356 * 15 14 13 17 17 C 1.38161 * 120.14782 * 0.55528 * 16 15 14 18 18 C 1.38942 * 120.06596 * 359.72011 * 17 16 15 19 19 N 1.39664 * 120.04665 * 180.02562 * 18 17 16 20 20 C 1.48005 * 110.99818 * 348.08927 * 19 18 17 21 21 C 1.50445 * 112.82869 * 191.34082 * 20 19 18 22 22 C 1.54315 * 108.49808 * 93.72882 * 21 20 19 23 23 C 1.45877 * 112.18186 * 281.46469 * 22 21 20 24 24 C 1.54306 * 112.18797 * 61.12108 * 23 22 21 25 25 C 1.48001 * 111.00423 * 219.36882 * 19 18 17 26 26 C 1.38703 * 120.03343 * 145.33288 * 14 13 11 27 27 C 1.46497 * 120.00231 * 270.00454 * 10 9 7 28 28 C 1.53000 * 117.49795 * 200.30378 * 27 10 9 29 29 C 1.52991 * 117.49819 * 131.64022 * 27 10 9 30 30 H 0.97003 * 120.00552 * 359.97438 * 1 2 3 31 31 H 1.08997 * 109.46805 * 60.00755 * 9 7 2 32 32 H 1.08991 * 109.47368 * 300.00726 * 9 7 2 33 33 H 0.96995 * 120.00512 * 4.39977 * 13 11 10 34 34 H 1.07999 * 119.96212 * 359.97438 * 15 14 13 35 35 H 1.08011 * 119.92194 * 180.28070 * 16 15 14 36 36 H 1.08007 * 119.97280 * 179.74810 * 17 16 15 37 37 H 1.08999 * 108.81131 * 312.21005 * 20 19 18 38 38 H 1.09003 * 108.80967 * 70.47911 * 20 19 18 39 39 H 1.09005 * 109.62968 * 334.02690 * 21 20 19 40 40 H 1.08999 * 109.63377 * 213.42901 * 21 20 19 41 41 H 1.08994 * 108.93460 * 160.76960 * 22 21 20 42 42 H 1.08994 * 108.93975 * 42.15932 * 22 21 20 43 43 H 1.09007 * 108.94202 * 300.42418 * 23 22 21 44 44 H 1.09005 * 108.93776 * 181.81761 * 23 22 21 45 45 H 1.09001 * 109.63313 * 161.75655 * 24 23 22 46 46 H 1.09003 * 109.63461 * 41.16386 * 24 23 22 47 47 H 1.09004 * 108.81052 * 205.69693 * 25 19 18 48 48 H 1.08995 * 108.80846 * 323.97223 * 25 19 18 49 49 H 1.08008 * 120.07162 * 359.97438 * 26 14 13 50 50 H 1.09004 * 115.55071 * 345.96809 * 27 10 9 51 51 H 1.08998 * 117.49694 * 359.97438 * 28 27 10 52 52 H 1.09001 * 117.49765 * 145.02143 * 28 27 10 53 53 H 1.09007 * 117.50073 * 214.97489 * 29 27 10 54 54 H 1.08999 * 117.50187 * 359.97438 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0000 10 7 3.9999 -2.5752 0.0013 11 6 4.2242 -3.2117 -1.1653 12 8 4.6749 -4.3409 -1.1648 13 7 3.9488 -2.5965 -2.3324 14 6 4.0999 -3.2872 -3.5401 15 6 5.1226 -4.2164 -3.6865 16 6 5.2690 -4.9029 -4.8764 17 6 4.4069 -4.6599 -5.9283 18 6 3.3857 -3.7279 -5.7904 19 7 2.5141 -3.4830 -6.8538 20 6 3.0170 -4.0958 -8.1036 21 6 2.2645 -3.6366 -9.3228 22 6 3.0148 -2.4367 -9.9381 23 6 2.7581 -1.1966 -9.2140 24 6 3.2232 -1.2728 -7.7446 25 6 2.1964 -2.0413 -6.9582 26 6 3.2325 -3.0407 -4.5941 27 6 4.2445 -3.2644 1.2707 28 6 5.1737 -4.4797 1.2470 29 6 3.6664 -4.6716 1.4332 30 1 -0.4851 0.8400 0.0004 31 1 3.8752 -0.6796 0.8895 32 1 3.8746 -0.6806 -0.8904 33 1 3.6498 -1.6738 -2.3356 34 1 5.8012 -4.4051 -2.8679 35 1 6.0620 -5.6279 -4.9860 36 1 4.5264 -5.1953 -6.8587 37 1 4.0695 -3.8385 -8.2225 38 1 2.9292 -5.1794 -8.0239 39 1 1.2573 -3.3320 -9.0383 40 1 2.2135 -4.4480 -10.0489 41 1 2.6970 -2.3141 -10.9734 42 1 4.0851 -2.6418 -9.9201 43 1 1.6882 -0.9889 -9.2360 44 1 3.2852 -0.3816 -9.7101 45 1 3.3179 -0.2660 -7.3378 46 1 4.1841 -1.7846 -7.6907 47 1 1.2265 -1.9292 -7.4428 48 1 2.1359 -1.6212 -5.9542 49 1 2.4393 -2.3159 -4.4840 50 1 4.2725 -2.6266 2.1542 51 1 5.6026 -4.7667 0.2869 52 1 5.8126 -4.6417 2.1151 53 1 3.3145 -4.9598 2.4238 54 1 3.1037 -5.0844 0.5959 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076081651.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:59 Heat of formation + Delta-G solvation = 42.076325 kcal Electronic energy + Delta-G solvation = -32909.735778 eV Core-core repulsion = 28847.631997 eV Total energy + Delta-G solvation = -4062.103781 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 357.216 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.00659 -41.22779 -39.29315 -37.64329 -36.46786 -35.66438 -34.77073 -34.02699 -33.30552 -30.99220 -30.18332 -29.51461 -27.24702 -26.31798 -24.75274 -24.14027 -23.28625 -23.16014 -22.53465 -21.47906 -21.12988 -20.32135 -19.13851 -18.98883 -18.43784 -17.54401 -17.06059 -16.72241 -16.65064 -16.44990 -16.01746 -15.88522 -15.65931 -15.22578 -15.05049 -14.92342 -14.72447 -14.54804 -14.44134 -14.08878 -13.95288 -13.86617 -13.67759 -13.37307 -13.17035 -13.10206 -12.75082 -12.57579 -12.43392 -12.35524 -12.31281 -12.16986 -11.84603 -11.79883 -11.59766 -11.56391 -11.45772 -11.31744 -11.18813 -11.05882 -10.83011 -10.61837 -10.41779 -9.39527 -9.02336 -8.55272 -8.31907 -6.41220 0.40849 0.51663 1.37925 1.40004 1.49415 1.62133 2.09662 2.31633 2.62773 2.84061 3.00718 3.01643 3.16857 3.69821 3.77727 3.87249 3.96866 4.05818 4.10641 4.14916 4.23154 4.23367 4.24843 4.34733 4.43193 4.45257 4.54078 4.56323 4.62568 4.65807 4.71006 4.76655 4.79655 4.81839 4.83878 4.86687 4.99394 5.07979 5.09750 5.18335 5.23152 5.26185 5.30720 5.36070 5.37372 5.39137 5.42600 5.47304 5.54252 5.62664 5.81424 5.95622 6.04283 6.17404 6.20885 6.38361 6.64112 6.88834 7.24581 7.55057 8.84565 Molecular weight = 357.22amu Principal moments of inertia in cm(-1) A = 0.009482 B = 0.003215 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2952.251569 B = 8706.830743 C =10961.326786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.021 3.979 3 Si 0.943 3.057 4 H -0.260 1.260 5 H -0.285 1.285 6 H -0.237 1.237 7 C -0.542 4.542 8 H 0.024 0.976 9 C 0.220 3.780 10 N -0.585 5.585 11 C 0.705 3.295 12 O -0.599 6.599 13 N -0.683 5.683 14 C 0.183 3.817 15 C -0.171 4.171 16 C -0.069 4.069 17 C -0.193 4.193 18 C 0.143 3.857 19 N -0.504 5.504 20 C 0.058 3.942 21 C -0.120 4.120 22 C -0.119 4.119 23 C -0.116 4.116 24 C -0.141 4.141 25 C 0.052 3.948 26 C -0.202 4.202 27 C 0.083 3.917 28 C -0.177 4.177 29 C -0.195 4.195 30 H 0.269 0.731 31 H 0.056 0.944 32 H 0.039 0.961 33 H 0.412 0.588 34 H 0.123 0.877 35 H 0.149 0.851 36 H 0.150 0.850 37 H 0.054 0.946 38 H 0.081 0.919 39 H 0.067 0.933 40 H 0.092 0.908 41 H 0.075 0.925 42 H 0.061 0.939 43 H 0.064 0.936 44 H 0.068 0.932 45 H 0.072 0.928 46 H 0.059 0.941 47 H 0.085 0.915 48 H 0.066 0.934 49 H 0.119 0.881 50 H 0.146 0.854 51 H 0.117 0.883 52 H 0.116 0.884 53 H 0.112 0.888 54 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.045 -3.282 -17.396 20.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.179 4.179 3 Si 0.765 3.235 4 H -0.185 1.185 5 H -0.211 1.211 6 H -0.160 1.160 7 C -0.580 4.580 8 H 0.042 0.958 9 C 0.098 3.902 10 N -0.316 5.316 11 C 0.408 3.592 12 O -0.481 6.481 13 N -0.330 5.330 14 C 0.087 3.913 15 C -0.193 4.193 16 C -0.088 4.088 17 C -0.215 4.215 18 C 0.043 3.957 19 N -0.218 5.218 20 C -0.067 4.067 21 C -0.158 4.158 22 C -0.156 4.156 23 C -0.153 4.153 24 C -0.180 4.180 25 C -0.073 4.073 26 C -0.226 4.226 27 C -0.022 4.022 28 C -0.214 4.214 29 C -0.234 4.234 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.057 0.943 33 H 0.250 0.750 34 H 0.141 0.859 35 H 0.166 0.834 36 H 0.167 0.833 37 H 0.072 0.928 38 H 0.099 0.901 39 H 0.086 0.914 40 H 0.110 0.890 41 H 0.094 0.906 42 H 0.080 0.920 43 H 0.083 0.917 44 H 0.087 0.913 45 H 0.091 0.909 46 H 0.078 0.922 47 H 0.104 0.896 48 H 0.084 0.916 49 H 0.137 0.863 50 H 0.163 0.837 51 H 0.135 0.865 52 H 0.134 0.866 53 H 0.130 0.870 54 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 10.692 -4.090 -17.309 20.752 hybrid contribution -0.368 1.517 0.449 1.624 sum 10.325 -2.573 -16.859 19.936 Atomic orbital electron populations 1.70064 1.08512 1.28443 1.50940 1.25819 0.95456 1.03089 0.93492 0.85794 0.79803 0.78147 0.79778 1.18489 1.21075 1.16027 1.21462 0.91154 0.93067 1.52367 0.95806 1.19609 0.93031 0.78879 0.98642 1.46568 1.66478 1.15192 1.03361 1.15981 0.78705 0.83789 0.80758 1.90660 1.52800 1.18554 1.86083 1.42872 1.69923 1.16643 1.03577 1.17605 0.94424 0.94838 0.84394 1.21192 0.98899 0.99980 0.99222 1.21112 0.98770 0.97631 0.91293 1.21267 0.96287 1.02854 1.01059 1.18693 0.90434 0.95366 0.91214 1.58843 1.42310 1.15556 1.05107 1.22100 0.98154 0.99502 0.86950 1.21482 0.99536 0.98981 0.95780 1.20599 1.00553 0.94442 1.00034 1.20558 1.01774 0.98731 0.94255 1.21843 0.98658 1.00756 0.96715 1.22172 0.99809 0.83954 1.01367 1.20556 1.01396 1.06687 0.93962 1.21724 1.05443 0.88635 0.86418 1.23850 0.92646 0.99645 1.05270 1.23131 0.97595 1.00560 1.02072 0.92214 0.92627 0.94327 0.75018 0.85931 0.83365 0.83269 0.92762 0.90077 0.91414 0.88991 0.90604 0.92030 0.91740 0.91319 0.90886 0.92250 0.89647 0.91584 0.86270 0.83675 0.86532 0.86627 0.86964 0.92345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.91 13.96 21.45 0.30 -55.61 16 2 C 0.02 1.11 5.47 84.65 0.46 1.57 16 3 Si 0.94 39.16 27.47 68.60 1.88 41.04 16 4 H -0.26 -10.24 7.11 99.48 0.71 -9.54 16 5 H -0.29 -11.96 7.11 99.48 0.71 -11.26 16 6 H -0.24 -8.79 6.54 99.48 0.65 -8.14 16 7 C -0.54 -29.12 9.94 25.60 0.25 -28.87 16 8 H 0.02 1.51 8.06 -2.91 -0.02 1.49 16 9 C 0.22 9.52 4.01 85.63 0.34 9.86 16 10 N -0.58 -24.52 2.83 -820.07 -2.32 -26.85 16 11 C 0.70 30.18 7.85 179.05 1.41 31.59 16 12 O -0.60 -26.42 9.52 -3.97 -0.04 -26.46 16 13 N -0.68 -27.18 5.21 -317.24 -1.65 -28.83 16 14 C 0.18 6.73 6.30 38.13 0.24 6.97 16 15 C -0.17 -5.82 8.69 22.42 0.19 -5.63 16 16 C -0.07 -1.85 10.03 22.23 0.22 -1.63 16 17 C -0.19 -4.83 8.77 22.42 0.20 -4.63 16 18 C 0.14 4.05 5.70 38.20 0.22 4.27 16 19 N -0.50 -12.10 4.77 -699.15 -3.33 -15.44 16 20 C 0.06 1.00 3.72 85.26 0.32 1.32 16 21 C -0.12 -1.62 5.63 30.21 0.17 -1.45 16 22 C -0.12 -1.43 5.30 28.86 0.15 -1.27 16 23 C -0.12 -1.61 5.30 28.85 0.15 -1.46 16 24 C -0.14 -2.58 5.58 30.21 0.17 -2.41 16 25 C 0.05 1.15 4.99 85.26 0.43 1.58 16 26 C -0.20 -6.82 8.92 22.52 0.20 -6.62 16 27 C 0.08 3.04 6.63 44.99 0.30 3.33 16 28 C -0.18 -5.78 9.65 30.62 0.30 -5.49 16 29 C -0.19 -7.09 9.86 30.62 0.30 -6.79 16 30 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 31 H 0.06 2.25 7.09 -2.39 -0.02 2.23 16 32 H 0.04 1.55 5.84 -2.39 -0.01 1.54 16 33 H 0.41 16.08 6.57 -92.71 -0.61 15.47 16 34 H 0.12 4.51 6.22 -2.91 -0.02 4.49 16 35 H 0.15 3.05 8.06 -2.91 -0.02 3.03 16 36 H 0.15 2.82 5.91 -2.91 -0.02 2.81 16 37 H 0.05 0.90 5.60 -2.39 -0.01 0.89 16 38 H 0.08 1.34 7.50 -2.39 -0.02 1.32 16 39 H 0.07 1.06 7.08 -2.38 -0.02 1.04 16 40 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.06 0.74 7.52 -2.39 -0.02 0.72 16 43 H 0.06 0.89 7.52 -2.38 -0.02 0.88 16 44 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 45 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 46 H 0.06 1.18 6.94 -2.39 -0.02 1.17 16 47 H 0.09 1.76 6.59 -2.38 -0.02 1.75 16 48 H 0.07 1.72 5.37 -2.39 -0.01 1.71 16 49 H 0.12 4.16 6.22 -2.91 -0.02 4.14 16 50 H 0.15 4.67 8.09 -2.38 -0.02 4.65 16 51 H 0.12 4.40 5.19 -6.93 -0.04 4.37 16 52 H 0.12 2.95 8.14 -2.39 -0.02 2.93 16 53 H 0.11 3.46 8.14 -2.38 -0.02 3.44 16 54 H 0.06 2.53 7.56 -2.39 -0.02 2.52 16 Total: -1.00 -67.44 402.91 1.09 -66.35 By element: Atomic # 1 Polarization: 51.30 SS G_CDS: 0.23 Total: 51.53 kcal Atomic # 6 Polarization: -11.76 SS G_CDS: 6.02 Total: -5.74 kcal Atomic # 7 Polarization: -119.71 SS G_CDS: -7.01 Total: -126.72 kcal Atomic # 8 Polarization: -26.42 SS G_CDS: -0.04 Total: -26.46 kcal Atomic # 14 Polarization: 39.16 SS G_CDS: 1.88 Total: 41.04 kcal Total: -67.44 1.09 -66.35 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076081651.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.421 kcal (2) G-P(sol) polarization free energy of solvation -67.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds