Wall clock time and date at job start Tue Mar 31 2020 05:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00061 * 2 1 4 4 H 1.48501 * 109.47198 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47548 * 300.00204 * 3 2 1 6 6 H 1.48505 * 109.47032 * 60.00055 * 3 2 1 7 7 C 1.37877 * 120.00162 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00317 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99950 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47252 * 180.02562 * 9 7 2 11 11 C 1.46506 * 119.99812 * 270.00070 * 10 9 7 12 12 C 1.52995 * 109.47034 * 269.99725 * 11 10 9 13 13 C 1.53001 * 117.50117 * 243.62465 * 12 11 10 14 14 C 1.52998 * 117.49771 * 174.99921 * 12 11 10 15 15 C 1.34774 * 120.00244 * 89.99946 * 10 9 7 16 16 O 1.21594 * 119.99882 * 0.02562 * 15 10 9 17 17 N 1.34775 * 120.00146 * 179.97438 * 15 10 9 18 18 C 1.40117 * 119.99800 * 184.18952 * 17 15 10 19 19 C 1.38857 * 119.99754 * 324.64064 * 18 17 15 20 20 C 1.38058 * 119.99798 * 179.76544 * 19 18 17 21 21 C 1.38874 * 119.99604 * 0.51038 * 20 19 18 22 22 N 1.40088 * 119.99615 * 179.72012 * 21 20 19 23 23 C 1.46762 * 124.34649 * 185.43187 * 22 21 20 24 24 C 1.54484 * 105.47360 * 197.02035 * 23 22 21 25 25 C 1.54625 * 101.76302 * 334.58176 * 24 23 22 26 26 C 1.34420 * 124.35276 * 5.13650 * 22 21 20 27 27 O 1.21294 * 124.94177 * 359.57644 * 26 22 21 28 28 C 1.38861 * 119.99851 * 359.74153 * 21 20 19 29 29 C 1.38059 * 119.99985 * 0.02562 * 28 21 20 30 30 H 0.97001 * 119.99799 * 0.02562 * 1 2 3 31 31 H 1.08998 * 109.46797 * 60.00176 * 9 7 2 32 32 H 1.08996 * 109.46991 * 300.00093 * 9 7 2 33 33 H 1.08999 * 109.46846 * 30.00192 * 11 10 9 34 34 H 1.09000 * 109.46656 * 150.00110 * 11 10 9 35 35 H 1.09006 * 115.55055 * 29.33251 * 12 11 10 36 36 H 1.08999 * 117.49460 * 0.02562 * 13 12 11 37 37 H 1.08998 * 117.49899 * 145.02277 * 13 12 11 38 38 H 1.09000 * 117.50020 * 214.98221 * 14 12 11 39 39 H 1.08993 * 117.50023 * 0.02562 * 14 12 11 40 40 H 0.96993 * 120.00101 * 4.47084 * 17 15 10 41 41 H 1.07996 * 120.00582 * 0.02562 * 19 18 17 42 42 H 1.07994 * 120.00416 * 180.23380 * 20 19 18 43 43 H 1.09000 * 110.24603 * 316.01835 * 23 22 21 44 44 H 1.08997 * 110.24478 * 77.93382 * 23 22 21 45 45 H 1.08993 * 110.96798 * 92.70691 * 24 23 22 46 46 H 1.09002 * 110.96415 * 216.46801 * 24 23 22 47 47 H 1.09003 * 110.48259 * 143.47533 * 25 24 23 48 48 H 1.08997 * 110.49064 * 265.98470 * 25 24 23 49 49 H 1.07996 * 120.00131 * 180.02562 * 28 21 20 50 50 H 1.07996 * 119.99564 * 179.97438 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3966 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 2.6790 -4.1694 -1.2693 12 6 1.7484 -5.3006 -1.7110 13 6 2.3403 -6.7087 -1.7993 14 6 2.0087 -5.9365 -3.0779 15 6 2.6410 -4.1249 1.1666 16 8 2.2455 -3.6631 2.2197 17 7 3.5164 -5.1496 1.1666 18 6 3.9042 -5.7397 2.3768 19 6 4.0453 -4.9586 3.5162 20 6 4.4227 -5.5408 4.7098 21 6 4.6716 -6.9058 4.7684 22 7 5.0603 -7.4955 5.9782 23 6 5.4565 -8.9011 6.1245 24 6 5.3691 -9.1984 7.6380 25 6 5.5665 -7.7912 8.2476 26 6 5.1237 -6.8454 7.1530 27 8 4.8614 -5.6720 7.3127 28 6 4.5356 -7.6859 3.6277 29 6 4.1534 -7.1044 2.4353 30 1 -0.4850 0.8401 -0.0004 31 1 0.6241 -2.5567 -0.8903 32 1 0.6247 -2.5571 0.8896 33 1 2.6868 -3.3877 -2.0289 34 1 3.6885 -4.5594 -1.1389 35 1 0.7114 -5.2096 -1.3875 36 1 3.3927 -6.8292 -1.5423 37 1 1.6929 -7.5444 -1.5338 38 1 1.1431 -6.2643 -3.6536 39 1 2.8433 -5.5494 -3.6624 40 1 3.8810 -5.4760 0.3291 41 1 3.8557 -3.8965 3.4697 42 1 4.5288 -4.9340 5.5968 43 1 4.7715 -9.5454 5.5734 44 1 6.4768 -9.0443 5.7689 45 1 4.3919 -9.6036 7.9001 46 1 6.1661 -9.8737 7.9493 47 1 4.9454 -7.6695 9.1351 48 1 6.6157 -7.6249 8.4917 49 1 4.7287 -8.7475 3.6733 50 1 4.0481 -7.7111 1.5481 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078468658.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:04 Heat of formation + Delta-G solvation = 10.800980 kcal Electronic energy + Delta-G solvation = -31544.205114 eV Core-core repulsion = 27344.912038 eV Total energy + Delta-G solvation = -4199.293076 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 357.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.18925 -40.10289 -38.37064 -37.24638 -36.76748 -34.82605 -34.23907 -32.70971 -32.12487 -30.82204 -28.46358 -28.01503 -27.57740 -25.98766 -23.65914 -23.24556 -22.34913 -22.28985 -21.52180 -20.77850 -19.89898 -19.15463 -18.02862 -17.70091 -17.03798 -16.97392 -16.44086 -15.75199 -15.15570 -15.10495 -14.91123 -14.54816 -14.35158 -14.20612 -14.02771 -13.84573 -13.76403 -13.64455 -13.29353 -13.25092 -13.11984 -12.62621 -12.43025 -12.20135 -12.12260 -11.90063 -11.58208 -11.50642 -11.47514 -11.31846 -11.19310 -10.85649 -10.61500 -10.56792 -10.36806 -10.08523 -9.90906 -9.73306 -9.60117 -9.31192 -9.16852 -8.74152 -8.40878 -7.77000 -7.32399 -6.01586 -4.05977 1.33804 1.53972 2.43574 2.62779 3.23872 3.32271 3.40413 3.44874 3.74916 3.83730 3.90957 3.99746 4.12427 4.34867 4.39315 4.52358 4.57262 4.86029 4.93015 4.96510 4.97819 5.04113 5.10392 5.13779 5.23636 5.32813 5.33135 5.37874 5.48019 5.50028 5.55878 5.62859 5.70036 5.78011 5.92787 5.96159 6.02619 6.12455 6.17891 6.22953 6.41060 6.54590 6.68257 6.85685 6.92034 7.01763 7.33732 7.38823 7.53516 7.70802 7.88950 7.96695 8.25776 8.61174 8.95200 9.28392 9.59571 11.06349 Molecular weight = 357.18amu Principal moments of inertia in cm(-1) A = 0.010382 B = 0.002588 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2696.335769 B =10818.653699 C =13110.632185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.061 3.939 3 Si 0.897 3.103 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.525 4.525 8 H 0.057 0.943 9 C 0.260 3.740 10 N -0.604 5.604 11 C 0.143 3.857 12 C -0.165 4.165 13 C -0.185 4.185 14 C -0.175 4.175 15 C 0.700 3.300 16 O -0.567 6.567 17 N -0.694 5.694 18 C 0.160 3.840 19 C -0.091 4.091 20 C -0.133 4.133 21 C 0.131 3.869 22 N -0.557 5.557 23 C 0.096 3.904 24 C -0.131 4.131 25 C -0.153 4.153 26 C 0.510 3.490 27 O -0.509 6.509 28 C -0.138 4.138 29 C -0.130 4.130 30 H 0.262 0.738 31 H 0.035 0.965 32 H 0.045 0.955 33 H 0.092 0.908 34 H 0.059 0.941 35 H 0.110 0.890 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.399 0.601 41 H 0.149 0.851 42 H 0.154 0.846 43 H 0.086 0.914 44 H 0.079 0.921 45 H 0.085 0.915 46 H 0.094 0.906 47 H 0.106 0.894 48 H 0.107 0.893 49 H 0.123 0.877 50 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.319 -24.303 5.896 27.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.141 4.141 3 Si 0.725 3.275 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.564 4.564 8 H 0.076 0.924 9 C 0.141 3.859 10 N -0.338 5.338 11 C 0.019 3.981 12 C -0.185 4.185 13 C -0.222 4.222 14 C -0.213 4.213 15 C 0.402 3.598 16 O -0.443 6.443 17 N -0.344 5.344 18 C 0.063 3.937 19 C -0.112 4.112 20 C -0.154 4.154 21 C 0.038 3.962 22 N -0.281 5.281 23 C -0.027 4.027 24 C -0.169 4.169 25 C -0.193 4.193 26 C 0.299 3.701 27 O -0.384 6.384 28 C -0.160 4.160 29 C -0.151 4.151 30 H 0.072 0.928 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.110 0.890 34 H 0.077 0.923 35 H 0.128 0.872 36 H 0.108 0.892 37 H 0.109 0.891 38 H 0.111 0.889 39 H 0.113 0.887 40 H 0.236 0.764 41 H 0.167 0.833 42 H 0.172 0.828 43 H 0.104 0.896 44 H 0.098 0.902 45 H 0.104 0.896 46 H 0.113 0.887 47 H 0.124 0.876 48 H 0.125 0.875 49 H 0.141 0.859 50 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 11.641 -23.110 6.688 26.726 hybrid contribution 0.545 0.594 -0.657 1.040 sum 12.185 -22.516 6.031 26.302 Atomic orbital electron populations 1.69938 1.05966 1.26876 1.50578 1.24919 0.94863 0.99169 0.95119 0.86458 0.80015 0.83473 0.77554 1.19833 1.21021 1.20882 1.21484 0.93396 0.90674 1.50846 0.92437 1.19248 0.86828 0.81271 0.98547 1.47536 1.47873 1.36238 1.02156 1.20963 0.94307 0.94945 0.87933 1.22982 1.01664 0.93717 1.00133 1.23011 1.01163 0.95430 1.02560 1.22902 1.03400 1.04282 0.90714 1.15926 0.79260 0.79448 0.85178 1.90903 1.61263 1.62261 1.29841 1.42953 1.47096 1.36883 1.07471 1.17593 0.98391 0.91086 0.86615 1.21411 0.97038 1.01810 0.90972 1.21540 1.00949 0.92968 0.99907 1.17710 1.01543 0.92506 0.84429 1.45747 1.63600 1.11694 1.07107 1.22220 1.01415 0.81360 0.97697 1.22615 1.04168 0.96631 0.93500 1.22335 1.04525 0.94243 0.98233 1.21058 0.76924 0.87941 0.84151 1.90675 1.48457 1.15774 1.83464 1.20376 1.05375 0.98894 0.91307 1.20582 1.04074 0.92537 0.97944 0.92792 0.94733 0.93700 0.89016 0.92295 0.87235 0.89234 0.89111 0.88933 0.88722 0.76413 0.83338 0.82847 0.89585 0.90235 0.89627 0.88727 0.87591 0.87482 0.85866 0.85637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.74 13.29 55.43 0.74 -26.00 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 22.16 29.54 -169.99 -5.02 17.14 16 4 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -7.03 7.11 56.52 0.40 -6.62 16 7 C -0.52 -14.91 9.39 -34.44 -0.32 -15.23 16 8 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 9 C 0.26 6.79 5.16 -5.19 -0.03 6.76 16 10 N -0.60 -12.76 2.46 -180.80 -0.44 -13.21 16 11 C 0.14 2.28 5.49 -4.04 -0.02 2.26 16 12 C -0.17 -2.25 6.01 -90.62 -0.54 -2.80 16 13 C -0.18 -1.95 10.18 -26.73 -0.27 -2.23 16 14 C -0.18 -1.89 10.25 -26.73 -0.27 -2.16 16 15 C 0.70 15.11 8.12 -86.92 -0.71 14.40 16 16 O -0.57 -14.74 13.38 5.28 0.07 -14.67 16 17 N -0.69 -11.54 5.22 -14.19 -0.07 -11.61 16 18 C 0.16 2.59 6.30 -83.61 -0.53 2.07 16 19 C -0.09 -1.67 8.68 -39.42 -0.34 -2.01 16 20 C -0.13 -2.23 9.29 -39.41 -0.37 -2.60 16 21 C 0.13 1.79 6.60 -83.62 -0.55 1.24 16 22 N -0.56 -6.09 3.14 -112.22 -0.35 -6.45 16 23 C 0.10 0.56 6.50 -3.12 -0.02 0.54 16 24 C -0.13 -0.51 7.18 -25.10 -0.18 -0.69 16 25 C -0.15 -0.98 6.86 -26.74 -0.18 -1.16 16 26 C 0.51 6.09 7.93 -10.86 -0.09 6.00 16 27 O -0.51 -8.34 14.81 5.55 0.08 -8.25 16 28 C -0.14 -1.60 9.41 -39.42 -0.37 -1.97 16 29 C -0.13 -1.64 9.96 -39.42 -0.39 -2.03 16 30 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 31 H 0.03 0.91 8.07 -51.93 -0.42 0.49 16 32 H 0.04 1.33 7.42 -51.93 -0.39 0.95 16 33 H 0.09 1.52 8.07 -51.93 -0.42 1.10 16 34 H 0.06 0.78 6.03 -51.93 -0.31 0.47 16 35 H 0.11 1.72 8.14 -51.93 -0.42 1.30 16 36 H 0.09 0.82 7.88 -51.93 -0.41 0.41 16 37 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.40 5.36 6.37 -40.82 -0.26 5.10 16 41 H 0.15 3.16 6.25 -52.49 -0.33 2.83 16 42 H 0.15 2.78 5.23 -52.49 -0.27 2.51 16 43 H 0.09 0.41 7.24 -51.93 -0.38 0.03 16 44 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 46 H 0.09 0.15 8.14 -51.93 -0.42 -0.28 16 47 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.12 1.00 6.74 -52.49 -0.35 0.65 16 50 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16 LS Contribution 408.69 15.07 6.16 6.16 Total: -1.00 -36.45 408.69 -11.44 -47.89 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -7.31 Total: 6.94 kcal Atomic # 6 Polarization: 7.35 SS G_CDS: -5.29 Total: 2.06 kcal Atomic # 7 Polarization: -57.13 SS G_CDS: -0.13 Total: -57.27 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: 0.15 Total: -22.93 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -36.45 -11.44 -47.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078468658.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.692 kcal (2) G-P(sol) polarization free energy of solvation -36.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds