Wall clock time and date at job start Tue Mar 31 2020 05:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00061 * 2 1 4 4 H 1.48501 * 109.47198 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47548 * 300.00204 * 3 2 1 6 6 H 1.48505 * 109.47032 * 60.00055 * 3 2 1 7 7 C 1.37877 * 120.00162 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00317 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99950 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47252 * 180.02562 * 9 7 2 11 11 C 1.46506 * 119.99812 * 270.00070 * 10 9 7 12 12 C 1.52995 * 109.47034 * 269.99725 * 11 10 9 13 13 C 1.53001 * 117.50117 * 243.62465 * 12 11 10 14 14 C 1.52998 * 117.49771 * 174.99921 * 12 11 10 15 15 C 1.34774 * 120.00244 * 89.99946 * 10 9 7 16 16 O 1.21594 * 119.99882 * 0.02562 * 15 10 9 17 17 N 1.34775 * 120.00146 * 179.97438 * 15 10 9 18 18 C 1.40117 * 119.99800 * 184.18952 * 17 15 10 19 19 C 1.38857 * 119.99754 * 324.64064 * 18 17 15 20 20 C 1.38058 * 119.99798 * 179.76544 * 19 18 17 21 21 C 1.38874 * 119.99604 * 0.51038 * 20 19 18 22 22 N 1.40088 * 119.99615 * 179.72012 * 21 20 19 23 23 C 1.46762 * 124.34649 * 185.43187 * 22 21 20 24 24 C 1.54484 * 105.47360 * 197.02035 * 23 22 21 25 25 C 1.54625 * 101.76302 * 334.58176 * 24 23 22 26 26 C 1.34420 * 124.35276 * 5.13650 * 22 21 20 27 27 O 1.21294 * 124.94177 * 359.57644 * 26 22 21 28 28 C 1.38861 * 119.99851 * 359.74153 * 21 20 19 29 29 C 1.38059 * 119.99985 * 0.02562 * 28 21 20 30 30 H 0.97001 * 119.99799 * 0.02562 * 1 2 3 31 31 H 1.08998 * 109.46797 * 60.00176 * 9 7 2 32 32 H 1.08996 * 109.46991 * 300.00093 * 9 7 2 33 33 H 1.08999 * 109.46846 * 30.00192 * 11 10 9 34 34 H 1.09000 * 109.46656 * 150.00110 * 11 10 9 35 35 H 1.09006 * 115.55055 * 29.33251 * 12 11 10 36 36 H 1.08999 * 117.49460 * 0.02562 * 13 12 11 37 37 H 1.08998 * 117.49899 * 145.02277 * 13 12 11 38 38 H 1.09000 * 117.50020 * 214.98221 * 14 12 11 39 39 H 1.08993 * 117.50023 * 0.02562 * 14 12 11 40 40 H 0.96993 * 120.00101 * 4.47084 * 17 15 10 41 41 H 1.07996 * 120.00582 * 0.02562 * 19 18 17 42 42 H 1.07994 * 120.00416 * 180.23380 * 20 19 18 43 43 H 1.09000 * 110.24603 * 316.01835 * 23 22 21 44 44 H 1.08997 * 110.24478 * 77.93382 * 23 22 21 45 45 H 1.08993 * 110.96798 * 92.70691 * 24 23 22 46 46 H 1.09002 * 110.96415 * 216.46801 * 24 23 22 47 47 H 1.09003 * 110.48259 * 143.47533 * 25 24 23 48 48 H 1.08997 * 110.49064 * 265.98470 * 25 24 23 49 49 H 1.07996 * 120.00131 * 180.02562 * 28 21 20 50 50 H 1.07996 * 119.99564 * 179.97438 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3966 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 2.6790 -4.1694 -1.2693 12 6 1.7484 -5.3006 -1.7110 13 6 2.3403 -6.7087 -1.7993 14 6 2.0087 -5.9365 -3.0779 15 6 2.6410 -4.1249 1.1666 16 8 2.2455 -3.6631 2.2197 17 7 3.5164 -5.1496 1.1666 18 6 3.9042 -5.7397 2.3768 19 6 4.0453 -4.9586 3.5162 20 6 4.4227 -5.5408 4.7098 21 6 4.6716 -6.9058 4.7684 22 7 5.0603 -7.4955 5.9782 23 6 5.4565 -8.9011 6.1245 24 6 5.3691 -9.1984 7.6380 25 6 5.5665 -7.7912 8.2476 26 6 5.1237 -6.8454 7.1530 27 8 4.8614 -5.6720 7.3127 28 6 4.5356 -7.6859 3.6277 29 6 4.1534 -7.1044 2.4353 30 1 -0.4850 0.8401 -0.0004 31 1 0.6241 -2.5567 -0.8903 32 1 0.6247 -2.5571 0.8896 33 1 2.6868 -3.3877 -2.0289 34 1 3.6885 -4.5594 -1.1389 35 1 0.7114 -5.2096 -1.3875 36 1 3.3927 -6.8292 -1.5423 37 1 1.6929 -7.5444 -1.5338 38 1 1.1431 -6.2643 -3.6536 39 1 2.8433 -5.5494 -3.6624 40 1 3.8810 -5.4760 0.3291 41 1 3.8557 -3.8965 3.4697 42 1 4.5288 -4.9340 5.5968 43 1 4.7715 -9.5454 5.5734 44 1 6.4768 -9.0443 5.7689 45 1 4.3919 -9.6036 7.9001 46 1 6.1661 -9.8737 7.9493 47 1 4.9454 -7.6695 9.1351 48 1 6.6157 -7.6249 8.4917 49 1 4.7287 -8.7475 3.6733 50 1 4.0481 -7.7111 1.5481 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078468658.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:03 Heat of formation + Delta-G solvation = -12.367432 kcal Electronic energy + Delta-G solvation = -31545.209772 eV Core-core repulsion = 27344.912038 eV Total energy + Delta-G solvation = -4200.297734 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 357.184 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.11497 -41.54087 -39.57860 -38.40418 -37.69017 -36.32506 -35.77194 -34.61383 -33.21988 -31.97346 -30.04872 -28.97732 -28.59292 -27.55230 -25.28133 -24.33175 -23.63482 -23.17793 -22.38907 -21.90432 -20.86139 -20.60954 -19.46900 -18.67455 -18.58531 -18.37875 -17.66445 -16.92652 -16.65268 -16.53592 -16.17235 -15.84644 -15.60155 -15.35063 -15.08842 -14.93729 -14.80737 -14.60188 -14.50922 -14.39993 -14.26377 -13.93949 -13.79546 -13.54728 -13.27993 -13.15174 -12.93747 -12.62246 -12.58516 -12.50758 -12.30231 -12.27869 -12.23422 -12.08031 -11.75497 -11.56977 -11.27963 -11.10886 -10.73536 -10.69873 -10.66574 -10.43566 -9.94821 -9.51589 -8.52536 -8.22989 -6.38395 0.18264 0.39531 1.32903 1.36390 1.46883 1.49749 1.70256 1.87442 2.17956 2.37154 2.81790 2.87792 3.05174 3.13947 3.30689 3.58184 3.83575 3.96374 3.98576 4.00513 4.06475 4.10963 4.14341 4.25321 4.34978 4.41467 4.57076 4.61044 4.66159 4.69222 4.78248 4.83484 4.84433 4.87981 4.95906 5.07865 5.10306 5.13387 5.16514 5.19452 5.22488 5.30547 5.33940 5.37156 5.51846 5.55495 5.67546 5.78575 6.04381 6.08424 6.10376 6.12803 6.70530 6.99739 7.05796 7.28733 7.64296 8.83080 Molecular weight = 357.18amu Principal moments of inertia in cm(-1) A = 0.010382 B = 0.002588 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2696.335769 B =10818.653699 C =13110.632185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.008 3.992 3 Si 0.966 3.034 4 H -0.269 1.269 5 H -0.265 1.265 6 H -0.284 1.284 7 C -0.540 4.540 8 H 0.051 0.949 9 C 0.280 3.720 10 N -0.608 5.608 11 C 0.143 3.857 12 C -0.197 4.197 13 C -0.162 4.162 14 C -0.159 4.159 15 C 0.694 3.306 16 O -0.624 6.624 17 N -0.670 5.670 18 C 0.132 3.868 19 C -0.119 4.119 20 C -0.161 4.161 21 C 0.135 3.865 22 N -0.560 5.560 23 C 0.084 3.916 24 C -0.117 4.117 25 C -0.145 4.145 26 C 0.489 3.511 27 O -0.570 6.570 28 C -0.119 4.119 29 C -0.105 4.105 30 H 0.267 0.733 31 H 0.028 0.972 32 H -0.005 1.005 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.078 0.922 36 H 0.114 0.886 37 H 0.100 0.900 38 H 0.099 0.901 39 H 0.110 0.890 40 H 0.417 0.583 41 H 0.099 0.901 42 H 0.125 0.875 43 H 0.107 0.893 44 H 0.102 0.898 45 H 0.092 0.908 46 H 0.130 0.870 47 H 0.111 0.889 48 H 0.126 0.874 49 H 0.177 0.823 50 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.135 -29.356 4.764 33.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.191 4.191 3 Si 0.791 3.209 4 H -0.193 1.193 5 H -0.190 1.190 6 H -0.210 1.210 7 C -0.579 4.579 8 H 0.069 0.931 9 C 0.159 3.841 10 N -0.342 5.342 11 C 0.020 3.980 12 C -0.217 4.217 13 C -0.199 4.199 14 C -0.196 4.196 15 C 0.396 3.604 16 O -0.504 6.504 17 N -0.321 5.321 18 C 0.036 3.964 19 C -0.140 4.140 20 C -0.182 4.182 21 C 0.040 3.960 22 N -0.283 5.283 23 C -0.036 4.036 24 C -0.154 4.154 25 C -0.185 4.185 26 C 0.281 3.719 27 O -0.450 6.450 28 C -0.139 4.139 29 C -0.126 4.126 30 H 0.076 0.924 31 H 0.046 0.954 32 H 0.013 0.987 33 H 0.098 0.902 34 H 0.109 0.891 35 H 0.097 0.903 36 H 0.133 0.867 37 H 0.118 0.882 38 H 0.118 0.882 39 H 0.128 0.872 40 H 0.257 0.743 41 H 0.117 0.883 42 H 0.143 0.857 43 H 0.125 0.875 44 H 0.120 0.880 45 H 0.110 0.890 46 H 0.148 0.852 47 H 0.129 0.871 48 H 0.144 0.856 49 H 0.194 0.806 50 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 14.515 -28.277 5.513 32.259 hybrid contribution -0.315 2.058 -0.218 2.094 sum 14.200 -26.219 5.295 30.283 Atomic orbital electron populations 1.70053 1.07485 1.28064 1.51128 1.25831 0.95804 1.02946 0.94503 0.85389 0.78701 0.78815 0.78009 1.19328 1.19002 1.20994 1.21728 0.93165 0.91997 1.51007 0.93098 1.18630 0.87158 0.82683 0.95663 1.47349 1.47164 1.35392 1.04254 1.21201 0.96354 0.95446 0.85007 1.22664 0.99815 0.95351 1.03840 1.23173 1.02426 0.93091 1.01175 1.23019 1.04085 1.02620 0.89915 1.16138 0.79734 0.80233 0.84271 1.90875 1.63366 1.64232 1.31956 1.42508 1.45618 1.35317 1.08679 1.17794 1.00385 0.92717 0.85461 1.21070 0.99784 1.00011 0.93184 1.21323 1.03333 0.95117 0.98387 1.17872 1.00072 0.91324 0.86683 1.46109 1.62544 1.13875 1.05780 1.22717 1.03130 0.78145 0.99588 1.22691 1.06003 0.95110 0.91607 1.22409 1.05385 0.94382 0.96310 1.22269 0.75838 0.87904 0.85919 1.90649 1.50980 1.18810 1.84564 1.20910 1.02636 1.00947 0.89452 1.21025 1.01078 0.90538 0.99992 0.92395 0.95432 0.98667 0.90187 0.89106 0.90328 0.86741 0.88192 0.88219 0.87175 0.74250 0.88312 0.85708 0.87472 0.87958 0.88966 0.85164 0.87077 0.85632 0.80577 0.81181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.91 13.29 21.45 0.28 -57.63 16 2 C 0.01 0.48 5.46 84.66 0.46 0.95 16 3 Si 0.97 46.90 29.54 68.60 2.03 48.92 16 4 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 5 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 6 H -0.28 -13.77 7.11 99.48 0.71 -13.07 16 7 C -0.54 -32.42 9.39 25.60 0.24 -32.18 16 8 H 0.05 3.05 7.81 -2.91 -0.02 3.02 16 9 C 0.28 15.81 5.16 85.63 0.44 16.25 16 10 N -0.61 -27.29 2.46 -844.20 -2.07 -29.36 16 11 C 0.14 4.56 5.49 86.38 0.47 5.03 16 12 C -0.20 -5.25 6.01 -10.80 -0.06 -5.31 16 13 C -0.16 -2.84 10.18 30.60 0.31 -2.52 16 14 C -0.16 -2.98 10.25 30.60 0.31 -2.66 16 15 C 0.69 31.99 8.12 179.06 1.45 33.44 16 16 O -0.62 -35.85 13.38 -4.01 -0.05 -35.90 16 17 N -0.67 -22.45 5.22 -317.06 -1.65 -24.11 16 18 C 0.13 4.32 6.30 38.11 0.24 4.56 16 19 C -0.12 -4.80 8.68 22.38 0.19 -4.61 16 20 C -0.16 -5.88 9.29 22.38 0.21 -5.68 16 21 C 0.14 3.56 6.60 38.12 0.25 3.81 16 22 N -0.56 -11.25 3.14 -627.53 -1.97 -13.22 16 23 C 0.08 0.57 6.50 86.83 0.56 1.14 16 24 C -0.12 -0.35 7.18 31.65 0.23 -0.13 16 25 C -0.15 -1.52 6.86 30.59 0.21 -1.31 16 26 C 0.49 11.76 7.93 87.90 0.70 12.45 16 27 O -0.57 -20.50 14.81 -3.07 -0.05 -20.54 16 28 C -0.12 -2.24 9.41 22.38 0.21 -2.03 16 29 C -0.11 -2.27 9.96 22.37 0.22 -2.05 16 30 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 31 H 0.03 1.57 8.07 -2.39 -0.02 1.55 16 32 H 0.00 -0.32 7.42 -2.39 -0.02 -0.33 16 33 H 0.08 2.71 8.07 -2.39 -0.02 2.69 16 34 H 0.09 2.25 6.03 -2.39 -0.01 2.24 16 35 H 0.08 2.59 8.14 -2.38 -0.02 2.57 16 36 H 0.11 1.46 7.88 -2.39 -0.02 1.44 16 37 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.42 10.36 6.37 -92.71 -0.59 9.77 16 41 H 0.10 4.89 6.25 -2.91 -0.02 4.87 16 42 H 0.13 5.24 5.23 -2.91 -0.02 5.22 16 43 H 0.11 0.33 7.24 -2.39 -0.02 0.32 16 44 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 45 H 0.09 0.22 8.14 -2.39 -0.02 0.20 16 46 H 0.13 -0.42 8.14 -2.39 -0.02 -0.44 16 47 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 48 H 0.13 0.87 8.14 -2.39 -0.02 0.85 16 49 H 0.18 1.53 6.74 -2.91 -0.02 1.51 16 50 H 0.17 2.20 8.06 -2.91 -0.02 2.18 16 Total: -1.00 -93.74 408.69 3.55 -90.20 By element: Atomic # 1 Polarization: 22.11 SS G_CDS: 0.38 Total: 22.49 kcal Atomic # 6 Polarization: 12.50 SS G_CDS: 6.66 Total: 19.16 kcal Atomic # 7 Polarization: -118.91 SS G_CDS: -5.42 Total: -124.32 kcal Atomic # 8 Polarization: -56.34 SS G_CDS: -0.10 Total: -56.44 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 2.03 Total: 48.92 kcal Total: -93.74 3.55 -90.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078468658.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.829 kcal (2) G-P(sol) polarization free energy of solvation -93.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds