Wall clock time and date at job start Tue Mar 31 2020 05:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86801 * 119.99784 * 2 1 4 4 H 1.48494 * 109.46929 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46968 * 300.00068 * 3 2 1 6 6 H 1.48496 * 109.47370 * 59.99921 * 3 2 1 7 7 C 1.37875 * 120.00312 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00136 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99751 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.46903 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47282 * 180.02562 * 10 9 7 12 12 N 1.46897 * 109.47655 * 180.02562 * 11 10 9 13 13 C 1.46956 * 110.99894 * 293.80344 * 12 11 10 14 14 C 1.53053 * 109.36342 * 176.80868 * 13 12 11 15 15 N 1.46958 * 109.36641 * 58.39662 * 14 13 12 16 16 C 1.46897 * 111.00399 * 176.80980 * 15 14 13 17 17 H 1.09003 * 110.43436 * 305.50966 * 16 15 14 18 18 C 1.54628 * 110.48323 * 68.18889 * 16 15 14 19 19 C 1.54484 * 101.76242 * 143.47641 * 18 16 15 20 20 N 1.46757 * 105.47640 * 334.58736 * 19 18 16 21 21 C 1.39928 * 124.35088 * 196.99682 * 20 19 18 22 22 C 1.38876 * 120.06540 * 185.44125 * 21 20 19 23 23 C 1.38121 * 119.92186 * 179.67604 * 22 21 20 24 24 C 1.38283 * 120.06807 * 0.61335 * 23 22 21 25 25 C 1.38278 * 120.14607 * 359.68209 * 24 23 22 26 26 C 1.38116 * 120.06693 * 359.97438 * 25 24 23 27 27 C 1.34418 * 111.30040 * 17.01187 * 20 19 18 28 28 O 1.21290 * 124.94680 * 179.55722 * 27 20 19 29 29 C 1.46956 * 110.88369 * 300.68147 * 15 14 13 30 30 C 1.46958 * 111.00399 * 169.99756 * 12 11 10 31 31 H 0.96998 * 120.00355 * 359.97438 * 1 2 3 32 32 H 1.09003 * 109.47149 * 60.00656 * 9 7 2 33 33 H 1.08997 * 109.47443 * 300.00066 * 9 7 2 34 34 H 1.09005 * 109.47512 * 60.00608 * 10 9 7 35 35 H 1.08998 * 109.47586 * 300.00638 * 10 9 7 36 36 H 1.08998 * 109.47097 * 60.00029 * 11 10 9 37 37 H 1.09007 * 109.46895 * 300.00702 * 11 10 9 38 38 H 1.09002 * 109.48630 * 296.77003 * 13 12 11 39 39 H 1.08992 * 109.49051 * 56.84066 * 13 12 11 40 40 H 1.09000 * 109.48925 * 298.43322 * 14 13 12 41 41 H 1.09000 * 109.49049 * 178.36763 * 14 13 12 42 42 H 1.08999 * 110.97499 * 261.59860 * 18 16 15 43 43 H 1.09001 * 110.97017 * 25.36447 * 18 16 15 44 44 H 1.09000 * 110.24551 * 215.58018 * 19 18 16 45 45 H 1.09005 * 110.31883 * 93.62776 * 19 18 16 46 46 H 1.07993 * 120.04168 * 359.96579 * 22 21 20 47 47 H 1.07996 * 119.96256 * 180.33718 * 23 22 21 48 48 H 1.08004 * 119.92377 * 179.69656 * 24 23 22 49 49 H 1.07997 * 119.96834 * 180.02562 * 25 24 23 50 50 H 1.08009 * 120.03351 * 180.02562 * 26 25 24 51 51 H 1.09002 * 109.48630 * 299.35541 * 29 15 14 52 52 H 1.08992 * 109.49051 * 179.28479 * 29 15 14 53 53 H 1.09000 * 109.49030 * 303.16133 * 30 12 11 54 54 H 1.09000 * 109.48470 * 63.22401 * 30 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0018 11 6 1.4805 -4.9870 -0.0025 12 7 2.4351 -6.1036 -0.0031 13 6 3.1981 -6.1434 -1.2584 14 6 4.2337 -7.2682 -1.1874 15 7 3.5490 -8.5466 -0.9497 16 6 4.5036 -9.6632 -0.9503 17 1 5.0852 -9.6661 -1.8722 18 6 5.4356 -9.5789 0.2806 19 6 5.6135 -11.0699 0.6436 20 7 4.4184 -11.7448 0.1240 21 6 3.9989 -13.0208 0.5160 22 6 2.9177 -13.6221 -0.1148 23 6 2.5103 -14.8845 0.2700 24 6 3.1699 -15.5442 1.2908 25 6 4.2430 -14.9457 1.9250 26 6 4.6597 -13.6864 1.5401 27 6 3.7787 -10.9797 -0.7773 28 8 2.7677 -11.2987 -1.3667 29 6 2.7860 -8.5068 0.3056 30 6 1.7504 -7.3820 0.2346 31 1 -0.4850 0.8400 0.0004 32 1 0.6242 -2.5567 -0.8904 33 1 0.6248 -2.5571 0.8896 34 1 2.8727 -3.6047 0.8878 35 1 2.8715 -3.6038 -0.8922 36 1 0.8535 -5.0442 -0.8922 37 1 0.8541 -5.0454 0.8877 38 1 2.5189 -6.3265 -2.0911 39 1 3.7059 -5.1903 -1.4057 40 1 4.9292 -7.0711 -0.3716 41 1 4.7812 -7.3183 -2.1285 42 1 6.3908 -9.1251 0.0164 43 1 4.9583 -9.0336 1.0948 44 1 5.6744 -11.1901 1.7252 45 1 6.5093 -11.4707 0.1692 46 1 2.3989 -13.1052 -0.9085 47 1 1.6730 -15.3550 -0.2238 48 1 2.8463 -16.5293 1.5931 49 1 4.7563 -15.4637 2.7215 50 1 5.4982 -13.2195 2.0355 51 1 3.4651 -8.3237 1.1383 52 1 2.2781 -9.4599 0.4529 53 1 1.2028 -7.3319 1.1757 54 1 1.0549 -7.5791 -0.5812 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079035331.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:10 Heat of formation + Delta-G solvation = -5.586132 kcal Electronic energy + Delta-G solvation = -31677.771413 eV Core-core repulsion = 27613.600832 eV Total energy + Delta-G solvation = -4064.170580 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 357.216 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.44918 -40.41571 -39.40798 -37.88427 -36.98397 -35.51283 -33.71551 -32.63914 -31.93247 -31.87593 -29.92686 -29.37834 -27.88336 -26.17295 -24.77913 -24.41542 -24.02300 -23.53367 -22.32558 -21.62490 -20.75435 -20.34032 -18.76785 -18.50142 -17.96814 -17.44191 -17.23942 -16.55305 -16.39509 -16.14064 -16.09769 -15.87793 -15.64443 -15.37587 -15.19761 -14.93612 -14.88042 -14.76962 -14.44489 -14.26546 -14.20333 -13.88697 -13.68144 -13.51749 -13.34151 -12.98305 -12.86621 -12.66250 -12.63338 -12.53945 -12.47745 -12.38915 -12.12542 -12.00542 -11.95728 -11.82755 -11.38127 -11.32971 -11.17510 -11.04377 -10.69636 -10.54710 -9.92469 -9.44535 -9.25863 -8.94496 -8.19142 -6.30273 0.25036 0.42662 1.41058 1.41291 1.42298 1.54942 1.70935 2.41718 2.69142 2.88776 2.89194 3.12839 3.14168 3.52824 3.70228 3.84545 3.90717 3.96679 4.00332 4.05623 4.13629 4.18978 4.26849 4.29936 4.39878 4.41610 4.46525 4.50604 4.51718 4.57333 4.59929 4.67875 4.70044 4.74869 4.82328 4.87743 4.89412 4.96880 5.02502 5.06326 5.09639 5.12927 5.20837 5.27473 5.44487 5.53002 5.56390 5.62013 5.74208 5.79671 5.86305 5.87011 6.00795 6.06784 6.13029 6.13985 6.27544 6.87051 6.94726 7.39127 8.93044 Molecular weight = 357.22amu Principal moments of inertia in cm(-1) A = 0.026430 B = 0.001609 C = 0.001581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.128116 B =17398.630522 C =17707.346030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.967 3.033 4 H -0.260 1.260 5 H -0.279 1.279 6 H -0.278 1.278 7 C -0.540 4.540 8 H 0.062 0.938 9 C 0.024 3.976 10 C -0.085 4.085 11 C 0.067 3.933 12 N -0.536 5.536 13 C 0.050 3.950 14 C 0.069 3.931 15 N -0.535 5.535 16 C 0.060 3.940 17 H 0.139 0.861 18 C -0.160 4.160 19 C 0.097 3.903 20 N -0.561 5.561 21 C 0.148 3.852 22 C -0.188 4.188 23 C -0.103 4.103 24 C -0.150 4.150 25 C -0.092 4.092 26 C -0.158 4.158 27 C 0.513 3.487 28 O -0.537 6.537 29 C 0.067 3.933 30 C 0.058 3.942 31 H 0.263 0.737 32 H -0.013 1.013 33 H -0.009 1.009 34 H 0.056 0.944 35 H 0.053 0.947 36 H 0.019 0.981 37 H 0.067 0.933 38 H 0.026 0.974 39 H 0.086 0.914 40 H 0.062 0.938 41 H 0.102 0.898 42 H 0.129 0.871 43 H 0.088 0.912 44 H 0.105 0.895 45 H 0.106 0.894 46 H 0.126 0.874 47 H 0.133 0.867 48 H 0.145 0.855 49 H 0.156 0.844 50 H 0.151 0.849 51 H 0.063 0.937 52 H 0.060 0.940 53 H 0.083 0.917 54 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.874 -32.313 3.645 36.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.201 4.201 3 Si 0.791 3.209 4 H -0.183 1.183 5 H -0.205 1.205 6 H -0.204 1.204 7 C -0.578 4.578 8 H 0.080 0.920 9 C -0.014 4.014 10 C -0.123 4.123 11 C -0.060 4.060 12 N -0.261 5.261 13 C -0.078 4.078 14 C -0.058 4.058 15 N -0.259 5.259 16 C -0.051 4.051 17 H 0.157 0.843 18 C -0.199 4.199 19 C -0.024 4.024 20 N -0.284 5.284 21 C 0.055 3.945 22 C -0.209 4.209 23 C -0.121 4.121 24 C -0.169 4.169 25 C -0.111 4.111 26 C -0.178 4.178 27 C 0.302 3.698 28 O -0.413 6.413 29 C -0.061 4.061 30 C -0.070 4.070 31 H 0.071 0.929 32 H 0.006 0.994 33 H 0.009 0.991 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.037 0.963 37 H 0.085 0.915 38 H 0.044 0.956 39 H 0.104 0.896 40 H 0.081 0.919 41 H 0.120 0.880 42 H 0.147 0.853 43 H 0.106 0.894 44 H 0.123 0.877 45 H 0.125 0.875 46 H 0.144 0.856 47 H 0.151 0.849 48 H 0.163 0.837 49 H 0.173 0.827 50 H 0.169 0.831 51 H 0.081 0.919 52 H 0.079 0.921 53 H 0.101 0.899 54 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 16.200 -32.347 3.311 36.328 hybrid contribution -0.741 1.039 -0.342 1.322 sum 15.459 -31.308 2.969 35.042 Atomic orbital electron populations 1.70116 1.07887 1.27659 1.51902 1.26018 0.95770 1.03488 0.94776 0.85370 0.79170 0.78627 0.77704 1.18338 1.20490 1.20413 1.21720 0.93610 0.92228 1.50199 0.91979 1.18993 0.94489 0.93315 0.94606 1.21360 0.97865 0.92168 1.00897 1.22013 0.93602 0.90656 0.99759 1.62240 1.26284 1.02634 1.34926 1.22281 0.96264 0.99544 0.89751 1.22174 0.94849 0.85922 1.02832 1.62055 1.25511 1.03366 1.35013 1.22489 0.92576 0.87931 1.02145 0.84331 1.23385 1.02611 0.96015 0.97898 1.22514 0.86353 0.91547 1.02020 1.45946 1.27455 1.14570 1.40448 1.18029 0.95717 0.84536 0.96253 1.21629 0.98791 0.97410 1.03039 1.21279 0.99838 0.93693 0.97327 1.21470 0.97040 1.01421 0.96948 1.21365 0.96164 0.94138 0.99404 1.21093 1.02569 0.96657 0.97481 1.21333 0.83342 0.87211 0.77954 1.90610 1.25092 1.76368 1.49239 1.22084 0.95722 0.97199 0.91102 1.22123 0.95477 0.88627 1.00808 0.92850 0.99442 0.99075 0.92561 0.92860 0.96320 0.91472 0.95611 0.89560 0.91945 0.88007 0.85305 0.89380 0.87696 0.87542 0.85636 0.84897 0.83688 0.82661 0.83127 0.91893 0.92144 0.89856 0.95822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.77 13.29 21.45 0.28 -57.48 16 2 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 3 Si 0.97 44.51 29.54 68.60 2.03 46.54 16 4 H -0.26 -11.29 7.11 99.48 0.71 -10.59 16 5 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 6 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 7 C -0.54 -31.07 9.11 25.60 0.23 -30.83 16 8 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 9 C 0.02 1.27 4.97 29.85 0.15 1.42 16 10 C -0.09 -3.55 5.09 30.59 0.16 -3.39 16 11 C 0.07 2.43 4.96 86.30 0.43 2.85 16 12 N -0.54 -15.88 4.71 -895.71 -4.22 -20.10 16 13 C 0.05 1.32 5.41 86.31 0.47 1.78 16 14 C 0.07 1.31 5.39 86.31 0.47 1.78 16 15 N -0.53 -11.24 4.73 -870.52 -4.12 -15.36 16 16 C 0.06 0.94 3.04 44.91 0.14 1.08 16 17 H 0.14 1.72 8.13 -2.39 -0.02 1.70 16 18 C -0.16 -1.31 5.68 31.65 0.18 -1.13 16 19 C 0.10 0.71 6.51 86.83 0.56 1.27 16 20 N -0.56 -9.38 3.14 -627.69 -1.97 -11.35 16 21 C 0.15 2.77 6.60 38.15 0.25 3.03 16 22 C -0.19 -4.24 9.29 22.39 0.21 -4.03 16 23 C -0.10 -1.80 10.04 22.25 0.22 -1.58 16 24 C -0.15 -1.93 10.04 22.29 0.22 -1.70 16 25 C -0.09 -1.01 10.04 22.25 0.22 -0.79 16 26 C -0.16 -1.99 9.42 22.39 0.21 -1.78 16 27 C 0.51 11.32 6.04 87.90 0.53 11.85 16 28 O -0.54 -16.73 14.75 -3.06 -0.05 -16.77 16 29 C 0.07 1.51 4.97 86.31 0.43 1.94 16 30 C 0.06 1.57 5.61 86.31 0.48 2.06 16 31 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 32 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 33 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 34 H 0.06 2.33 8.14 -2.38 -0.02 2.31 16 35 H 0.05 2.14 6.49 -2.39 -0.02 2.13 16 36 H 0.02 0.71 8.12 -2.39 -0.02 0.69 16 37 H 0.07 2.43 8.03 -2.38 -0.02 2.41 16 38 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.09 2.34 6.34 -2.39 -0.02 2.32 16 40 H 0.06 1.04 7.52 -2.39 -0.02 1.02 16 41 H 0.10 1.52 8.13 -2.39 -0.02 1.50 16 42 H 0.13 0.37 8.14 -2.39 -0.02 0.35 16 43 H 0.09 0.92 5.58 -2.39 -0.01 0.90 16 44 H 0.10 0.43 7.24 -2.39 -0.02 0.42 16 45 H 0.11 0.33 8.14 -2.38 -0.02 0.32 16 46 H 0.13 3.54 5.25 -2.91 -0.02 3.53 16 47 H 0.13 1.92 8.06 -2.91 -0.02 1.90 16 48 H 0.15 1.12 8.06 -2.91 -0.02 1.09 16 49 H 0.16 0.74 8.06 -2.91 -0.02 0.71 16 50 H 0.15 1.01 6.75 -2.91 -0.02 0.99 16 51 H 0.06 1.25 5.96 -2.39 -0.01 1.24 16 52 H 0.06 1.53 6.97 -2.39 -0.02 1.52 16 53 H 0.08 2.15 8.07 -2.39 -0.02 2.13 16 54 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 Total: -1.00 -76.39 414.91 -1.13 -77.52 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: 0.88 Total: 12.90 kcal Atomic # 6 Polarization: -21.92 SS G_CDS: 6.03 Total: -15.89 kcal Atomic # 7 Polarization: -94.27 SS G_CDS: -10.02 Total: -104.29 kcal Atomic # 8 Polarization: -16.73 SS G_CDS: -0.05 Total: -16.77 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -76.39 -1.13 -77.52 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079035331.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.938 kcal (2) G-P(sol) polarization free energy of solvation -76.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds