Wall clock time and date at job start Tue Mar 31 2020 05:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86810 * 120.00119 * 2 1 4 4 H 1.48506 * 109.46597 * 269.99912 * 3 2 1 5 5 H 1.48492 * 109.47084 * 29.99554 * 3 2 1 6 6 H 1.48494 * 109.46956 * 150.00277 * 3 2 1 7 7 C 1.37877 * 120.00296 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00241 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99548 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47262 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.47381 * 180.02562 * 10 9 7 12 12 N 1.46901 * 109.46711 * 180.02562 * 11 10 9 13 13 C 1.46963 * 110.99517 * 169.99824 * 12 11 10 14 14 C 1.53044 * 109.36264 * 183.18490 * 13 12 11 15 15 N 1.46958 * 109.36867 * 301.60076 * 14 13 12 16 16 C 1.46895 * 111.00205 * 183.18921 * 15 14 13 17 17 H 1.09000 * 110.43713 * 298.91128 * 16 15 14 18 18 C 1.54628 * 110.48769 * 176.22654 * 16 15 14 19 19 C 1.54478 * 101.76634 * 216.52377 * 18 16 15 20 20 N 1.46762 * 105.47302 * 25.41641 * 19 18 16 21 21 C 1.39921 * 124.34599 * 163.00342 * 20 19 18 22 22 C 1.38882 * 120.06702 * 173.99921 * 21 20 19 23 23 C 1.38117 * 119.92524 * 179.70027 * 22 21 20 24 24 C 1.38283 * 120.06982 * 0.57541 * 23 22 21 25 25 C 1.38282 * 120.14337 * 359.72319 * 24 23 22 26 26 C 1.38114 * 120.06997 * 359.97438 * 25 24 23 27 27 C 1.34420 * 111.30036 * 342.98234 * 20 19 18 28 28 O 1.21280 * 124.93684 * 180.38498 * 27 20 19 29 29 C 1.46955 * 110.87854 * 59.31909 * 15 14 13 30 30 C 1.46949 * 110.99824 * 293.79360 * 12 11 10 31 31 H 0.97004 * 119.99775 * 0.02562 * 1 2 3 32 32 H 1.09002 * 109.47759 * 59.99746 * 9 7 2 33 33 H 1.09000 * 109.47397 * 299.99498 * 9 7 2 34 34 H 1.09001 * 109.47303 * 59.99927 * 10 9 7 35 35 H 1.09003 * 109.47001 * 299.99835 * 10 9 7 36 36 H 1.08991 * 109.47008 * 59.99751 * 11 10 9 37 37 H 1.08995 * 109.46667 * 299.99821 * 11 10 9 38 38 H 1.08998 * 109.48633 * 63.21875 * 13 12 11 39 39 H 1.08991 * 109.48899 * 303.15653 * 13 12 11 40 40 H 1.09003 * 109.48895 * 181.62967 * 14 13 12 41 41 H 1.09004 * 109.48946 * 61.56935 * 14 13 12 42 42 H 1.09001 * 110.96810 * 98.40412 * 18 16 15 43 43 H 1.09007 * 110.96939 * 334.64500 * 18 16 15 44 44 H 1.08996 * 110.24401 * 266.41055 * 19 18 16 45 45 H 1.09004 * 110.24302 * 144.41912 * 19 18 16 46 46 H 1.08000 * 120.03590 * 359.97438 * 22 21 20 47 47 H 1.08002 * 119.95904 * 180.29660 * 23 22 21 48 48 H 1.08000 * 119.92175 * 179.69731 * 24 23 22 49 49 H 1.08002 * 119.96130 * 179.97438 * 25 24 23 50 50 H 1.07993 * 120.03540 * 180.02562 * 26 25 24 51 51 H 1.08998 * 109.48681 * 60.65096 * 29 15 14 52 52 H 1.09003 * 109.48827 * 180.71595 * 29 15 14 53 53 H 1.08996 * 109.49455 * 296.77974 * 30 12 11 54 54 H 1.08998 * 109.49117 * 56.85621 * 30 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9871 -0.0001 12 7 2.4348 -6.1036 0.0005 13 6 1.7499 -7.3820 0.2382 14 6 2.7853 -8.5066 0.3105 15 7 3.5493 -8.5471 -0.9443 16 6 4.5038 -9.6637 -0.9437 17 1 5.2209 -9.5509 -0.1306 18 6 5.2335 -9.7526 -2.3041 19 6 5.3684 -11.2802 -2.4899 20 7 4.2748 -11.8679 -1.7072 21 6 3.8129 -13.1801 -1.8577 22 6 2.8567 -13.6854 -0.9863 23 6 2.3983 -14.9790 -1.1413 24 6 2.8990 -15.7747 -2.1554 25 6 3.8556 -15.2766 -3.0208 26 6 4.3136 -13.9818 -2.8750 27 6 3.7744 -10.9838 -0.8270 28 8 2.8694 -11.2114 -0.0523 29 6 4.2341 -7.2688 -1.1819 30 6 3.1986 -6.1441 -1.2542 31 1 -0.4850 0.8401 -0.0004 32 1 0.6246 -2.5571 -0.8896 33 1 0.6241 -2.5567 0.8903 34 1 2.8719 -3.6044 0.8905 35 1 2.8718 -3.6043 -0.8895 36 1 0.8538 -5.0445 -0.8902 37 1 0.8533 -5.0450 0.8896 38 1 1.0549 -7.5793 -0.5779 39 1 1.2017 -7.3313 1.1789 40 1 2.2773 -9.4597 0.4579 41 1 3.4639 -8.3233 1.1436 42 1 6.2133 -9.2779 -2.2529 43 1 4.6305 -9.3146 -3.0995 44 1 6.3308 -11.6229 -2.1100 45 1 5.2625 -11.5429 -3.5425 46 1 2.4688 -13.0660 -0.1911 47 1 1.6512 -15.3709 -0.4669 48 1 2.5424 -16.7875 -2.2713 49 1 4.2449 -15.9008 -3.8115 50 1 5.0604 -13.5933 -3.5515 51 1 4.9291 -7.0715 -0.3658 52 1 4.7824 -7.3194 -2.1227 53 1 2.5202 -6.3275 -2.0873 54 1 3.7067 -5.1911 -1.4016 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079035338.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:14 Heat of formation + Delta-G solvation = -6.916535 kcal Electronic energy + Delta-G solvation = -31493.519890 eV Core-core repulsion = 27429.291619 eV Total energy + Delta-G solvation = -4064.228271 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 357.216 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.35609 -40.36199 -39.41123 -37.84258 -37.06948 -35.50871 -33.77941 -32.66100 -31.94763 -31.85528 -29.94215 -29.34909 -27.88275 -26.08673 -25.08822 -24.05829 -23.85305 -23.53986 -21.86023 -21.65900 -20.86688 -20.69476 -18.76177 -18.51974 -18.15274 -17.38122 -17.14744 -16.57203 -16.39328 -16.27993 -16.05765 -15.70776 -15.57823 -15.35080 -15.28518 -15.06399 -14.80046 -14.72297 -14.42536 -14.33896 -14.07024 -13.84425 -13.68871 -13.54665 -13.23303 -13.00760 -12.77549 -12.72999 -12.61076 -12.46768 -12.45372 -12.25044 -12.19246 -12.14691 -11.92383 -11.76736 -11.40754 -11.32436 -11.18581 -11.07282 -10.54908 -10.49079 -9.91513 -9.50803 -9.28709 -8.93527 -8.19242 -6.30546 0.24899 0.43562 1.38751 1.40563 1.42384 1.53667 1.72508 2.41593 2.77887 2.89859 2.93049 3.06395 3.13892 3.46240 3.83610 3.88238 3.97581 4.01135 4.03763 4.06524 4.15166 4.25390 4.28611 4.33859 4.36640 4.43403 4.49442 4.51737 4.55269 4.56279 4.60908 4.69729 4.70574 4.84432 4.88075 4.90678 4.96291 4.97989 5.03454 5.08298 5.10360 5.12835 5.21621 5.26632 5.45353 5.52182 5.58754 5.62768 5.73950 5.83254 5.85835 5.86385 6.01811 6.09164 6.12344 6.17005 6.27495 6.86285 6.91130 7.38747 8.92733 Molecular weight = 357.22amu Principal moments of inertia in cm(-1) A = 0.028700 B = 0.001567 C = 0.001519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.360402 B =17860.981271 C =18430.401784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.967 3.033 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.263 1.263 7 C -0.542 4.542 8 H 0.061 0.939 9 C 0.025 3.975 10 C -0.085 4.085 11 C 0.068 3.932 12 N -0.544 5.544 13 C 0.061 3.939 14 C 0.051 3.949 15 N -0.530 5.530 16 C 0.053 3.947 17 H 0.093 0.907 18 C -0.115 4.115 19 C 0.093 3.907 20 N -0.558 5.558 21 C 0.147 3.853 22 C -0.188 4.188 23 C -0.104 4.104 24 C -0.150 4.150 25 C -0.093 4.093 26 C -0.157 4.157 27 C 0.516 3.484 28 O -0.538 6.538 29 C 0.067 3.933 30 C 0.052 3.948 31 H 0.263 0.737 32 H -0.011 1.011 33 H -0.010 1.010 34 H 0.052 0.948 35 H 0.054 0.946 36 H 0.022 0.978 37 H 0.064 0.936 38 H 0.028 0.972 39 H 0.078 0.922 40 H 0.097 0.903 41 H 0.036 0.964 42 H 0.129 0.871 43 H 0.096 0.904 44 H 0.106 0.894 45 H 0.110 0.890 46 H 0.127 0.873 47 H 0.133 0.867 48 H 0.145 0.855 49 H 0.156 0.844 50 H 0.153 0.847 51 H 0.046 0.954 52 H 0.112 0.888 53 H 0.032 0.968 54 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.730 -33.472 -8.965 38.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.791 3.209 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.187 1.187 7 C -0.580 4.580 8 H 0.079 0.921 9 C -0.013 4.013 10 C -0.123 4.123 11 C -0.060 4.060 12 N -0.269 5.269 13 C -0.067 4.067 14 C -0.077 4.077 15 N -0.256 5.256 16 C -0.059 4.059 17 H 0.110 0.890 18 C -0.153 4.153 19 C -0.027 4.027 20 N -0.280 5.280 21 C 0.054 3.946 22 C -0.208 4.208 23 C -0.122 4.122 24 C -0.169 4.169 25 C -0.111 4.111 26 C -0.177 4.177 27 C 0.306 3.694 28 O -0.415 6.415 29 C -0.061 4.061 30 C -0.077 4.077 31 H 0.072 0.928 32 H 0.008 0.992 33 H 0.008 0.992 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.040 0.960 37 H 0.082 0.918 38 H 0.046 0.954 39 H 0.096 0.904 40 H 0.115 0.885 41 H 0.055 0.945 42 H 0.147 0.853 43 H 0.115 0.885 44 H 0.124 0.876 45 H 0.128 0.872 46 H 0.145 0.855 47 H 0.151 0.849 48 H 0.163 0.837 49 H 0.174 0.826 50 H 0.170 0.830 51 H 0.065 0.935 52 H 0.130 0.870 53 H 0.050 0.950 54 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 15.133 -33.466 -8.553 37.711 hybrid contribution -0.622 1.152 0.501 1.402 sum 14.510 -32.314 -8.052 36.326 Atomic orbital electron populations 1.70108 1.07882 1.27734 1.51760 1.26013 0.95774 1.03463 0.94712 0.85420 0.78649 0.78269 0.78543 1.19628 1.20819 1.18667 1.21683 0.93576 0.92262 1.50440 0.92067 1.18983 0.94451 0.93247 0.94627 1.21368 0.97892 0.92286 1.00788 1.22003 0.93588 0.90622 0.99756 1.62237 1.26487 1.02854 1.35289 1.22113 0.95513 0.88439 1.00643 1.22402 0.96041 0.99325 0.89884 1.62170 1.25206 1.03095 1.35178 1.22363 0.93620 0.88179 1.01712 0.88951 1.22846 1.03039 0.94985 0.94397 1.22620 0.89221 0.92911 0.97991 1.45879 1.35122 1.09937 1.37090 1.18045 0.96262 0.83647 0.96689 1.21637 0.99907 0.97786 1.01467 1.21280 0.99381 0.92978 0.98585 1.21473 0.98506 1.01056 0.95870 1.21369 0.95898 0.94759 0.99093 1.21102 1.03533 0.94882 0.98212 1.21298 0.81958 0.87246 0.78943 1.90514 1.30342 1.80834 1.39836 1.22233 0.94832 0.86281 1.02716 1.22263 0.96225 0.99396 0.89765 0.92823 0.99249 0.99198 0.92951 0.92708 0.95989 0.91761 0.95365 0.90392 0.88469 0.94545 0.85287 0.88536 0.87639 0.87203 0.85510 0.84913 0.83724 0.82625 0.82975 0.93542 0.86960 0.95009 0.89712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.95 13.29 21.45 0.28 -57.66 16 2 C 0.00 -0.12 5.46 84.66 0.46 0.34 16 3 Si 0.97 44.74 29.54 68.60 2.03 46.76 16 4 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 5 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 6 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16 7 C -0.54 -31.47 9.11 25.60 0.23 -31.24 16 8 H 0.06 3.40 7.74 -2.91 -0.02 3.37 16 9 C 0.02 1.34 4.97 29.85 0.15 1.48 16 10 C -0.09 -3.65 5.09 30.60 0.16 -3.50 16 11 C 0.07 2.52 4.96 86.30 0.43 2.95 16 12 N -0.54 -17.06 4.71 -895.75 -4.22 -21.28 16 13 C 0.06 1.78 5.61 86.31 0.48 2.26 16 14 C 0.05 1.34 5.36 86.31 0.46 1.80 16 15 N -0.53 -11.40 4.55 -870.52 -3.96 -15.36 16 16 C 0.05 0.85 2.65 44.91 0.12 0.97 16 17 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 18 C -0.11 -0.85 5.50 31.65 0.17 -0.67 16 19 C 0.09 0.63 6.51 86.83 0.56 1.19 16 20 N -0.56 -9.27 3.14 -627.70 -1.97 -11.24 16 21 C 0.15 2.72 6.60 38.16 0.25 2.97 16 22 C -0.19 -4.15 9.29 22.40 0.21 -3.95 16 23 C -0.10 -1.79 10.04 22.25 0.22 -1.56 16 24 C -0.15 -1.90 10.04 22.29 0.22 -1.67 16 25 C -0.09 -0.98 10.04 22.25 0.22 -0.76 16 26 C -0.16 -1.93 9.42 22.39 0.21 -1.71 16 27 C 0.52 11.30 7.48 87.90 0.66 11.96 16 28 O -0.54 -15.78 11.86 -3.03 -0.04 -15.81 16 29 C 0.07 1.30 5.41 86.31 0.47 1.77 16 30 C 0.05 1.38 5.41 86.31 0.47 1.85 16 31 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 32 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 33 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 34 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 35 H 0.05 2.24 6.49 -2.39 -0.02 2.22 16 36 H 0.02 0.84 8.12 -2.39 -0.02 0.82 16 37 H 0.06 2.42 8.02 -2.39 -0.02 2.40 16 38 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.08 2.23 8.07 -2.39 -0.02 2.21 16 40 H 0.10 2.83 5.16 -2.39 -0.01 2.81 16 41 H 0.04 0.97 8.14 -2.38 -0.02 0.95 16 42 H 0.13 0.19 8.14 -2.39 -0.02 0.17 16 43 H 0.10 0.84 7.87 -2.38 -0.02 0.82 16 44 H 0.11 0.27 8.14 -2.39 -0.02 0.25 16 45 H 0.11 0.32 7.24 -2.38 -0.02 0.31 16 46 H 0.13 3.48 5.26 -2.91 -0.02 3.46 16 47 H 0.13 1.89 8.06 -2.91 -0.02 1.87 16 48 H 0.14 1.09 8.06 -2.91 -0.02 1.06 16 49 H 0.16 0.67 8.06 -2.91 -0.02 0.65 16 50 H 0.15 0.92 6.75 -2.91 -0.02 0.90 16 51 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 52 H 0.11 1.49 6.89 -2.39 -0.02 1.47 16 53 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 54 H 0.08 2.33 6.34 -2.39 -0.02 2.31 16 Total: -1.00 -76.07 415.19 -0.84 -76.91 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: 0.87 Total: 13.22 kcal Atomic # 6 Polarization: -21.70 SS G_CDS: 6.16 Total: -15.54 kcal Atomic # 7 Polarization: -95.67 SS G_CDS: -9.87 Total: -105.54 kcal Atomic # 8 Polarization: -15.78 SS G_CDS: -0.04 Total: -15.81 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.76 kcal Total: -76.07 -0.84 -76.91 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079035338.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.990 kcal (2) G-P(sol) polarization free energy of solvation -76.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds