Wall clock time and date at job start Tue Mar 31 2020 05:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.46876 * 2 1 4 4 C 1.50705 * 109.47361 * 120.00009 * 2 1 3 5 5 H 1.08000 * 119.99601 * 119.99812 * 4 2 1 6 6 C 1.37876 * 119.99906 * 299.99973 * 4 2 1 7 7 N 1.31517 * 119.99971 * 179.97438 * 6 4 2 8 8 Si 1.86797 * 119.99943 * 0.02562 * 6 4 2 9 9 H 1.48505 * 109.47352 * 89.99976 * 8 6 4 10 10 H 1.48505 * 109.47208 * 210.00002 * 8 6 4 11 11 H 1.48506 * 109.47233 * 329.99860 * 8 6 4 12 12 N 1.46504 * 109.46968 * 240.00160 * 2 1 3 13 13 C 1.34772 * 119.99867 * 84.99894 * 12 2 1 14 14 O 1.21573 * 120.00620 * 359.97438 * 13 12 2 15 15 C 1.47663 * 119.99713 * 180.02562 * 13 12 2 16 16 N 1.32270 * 126.60178 * 0.02562 * 15 13 12 17 17 N 1.28861 * 110.19464 * 179.97438 * 16 15 13 18 18 C 1.40157 * 125.05600 * 179.97438 * 17 16 15 19 19 C 1.38850 * 120.04388 * 41.74734 * 18 17 16 20 20 C 1.38099 * 119.95966 * 179.79062 * 19 18 17 21 21 C 1.38499 * 120.03830 * 0.46905 * 20 19 18 22 22 F 1.35099 * 119.95226 * 179.76462 * 21 20 19 23 23 C 1.38496 * 120.08353 * 359.78723 * 21 20 19 24 24 C 1.38090 * 120.04476 * 359.97438 * 23 21 20 25 25 C 1.35107 * 109.88538 * 359.94187 * 17 16 15 26 26 C 1.35576 * 107.14131 * 0.11606 * 25 17 16 27 27 C 1.50385 * 124.58984 * 179.84443 * 26 25 17 28 28 C 1.53478 * 108.28280 * 343.73102 * 27 26 25 29 29 C 1.53105 * 109.51359 * 49.51347 * 28 27 26 30 30 C 1.50693 * 128.94257 * 180.22305 * 25 17 16 31 31 H 1.08999 * 109.46876 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46795 * 299.99518 * 1 2 3 33 33 H 1.08999 * 109.46971 * 59.99944 * 1 2 3 34 34 H 0.96997 * 119.99698 * 179.97438 * 7 6 4 35 35 H 0.97005 * 119.99858 * 264.99975 * 12 2 1 36 36 H 1.07998 * 120.02517 * 0.02562 * 19 18 17 37 37 H 1.08002 * 119.97851 * 180.23264 * 20 19 18 38 38 H 1.08001 * 119.97364 * 179.97438 * 23 21 20 39 39 H 1.08002 * 120.01887 * 180.02562 * 24 23 21 40 40 H 1.09001 * 109.69692 * 224.03811 * 27 26 25 41 41 H 1.08996 * 109.73811 * 103.45408 * 27 26 25 42 42 H 1.08996 * 109.46874 * 289.50358 * 28 27 26 43 43 H 1.08997 * 109.45960 * 169.52246 * 28 27 26 44 44 H 1.09002 * 109.43946 * 169.89561 * 29 28 27 45 45 H 1.09000 * 109.41676 * 49.98700 * 29 28 27 46 46 H 1.09008 * 109.68919 * 282.97827 * 30 25 17 47 47 H 1.08999 * 109.69131 * 43.55712 * 30 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1374 -0.8596 3.5566 8 14 0.6248 1.2790 2.6541 9 1 -0.8028 0.8725 2.6998 10 1 0.9760 1.9951 3.9068 11 1 0.8470 2.1764 1.4920 12 7 2.0183 -0.6906 -1.1962 13 6 2.1470 -0.0182 -2.3571 14 8 1.8574 1.1613 -2.4119 15 6 2.6386 -0.7145 -3.5629 16 7 2.9878 -1.9872 -3.6515 17 7 3.3692 -2.2613 -4.8515 18 6 3.8057 -3.5190 -5.2899 19 6 3.1422 -4.6673 -4.8788 20 6 3.5711 -5.9053 -5.3153 21 6 4.6685 -6.0025 -6.1548 22 9 5.0895 -7.2148 -6.5769 23 6 5.3348 -4.8585 -6.5615 24 6 4.9058 -3.6185 -6.1311 25 6 3.2849 -1.1563 -5.6242 26 6 2.8255 -0.1525 -4.8373 27 6 2.5879 1.2574 -5.3036 28 6 3.3191 1.4525 -6.6389 29 6 2.9688 0.3022 -7.5866 30 6 3.6168 -0.9946 -7.0852 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.9033 -0.5280 4.4375 35 1 2.2490 -1.6318 -1.1527 36 1 2.2888 -4.5922 -4.2212 37 1 3.0529 -6.7985 -4.9988 38 1 6.1906 -4.9364 -7.2158 39 1 5.4255 -2.7267 -6.4489 40 1 2.9771 1.9589 -4.5657 41 1 1.5197 1.4244 -5.4417 42 1 4.3951 1.4653 -6.4654 43 1 3.0121 2.3979 -7.0862 44 1 3.3392 0.5301 -8.5861 45 1 1.8865 0.1774 -7.6205 46 1 4.6980 -0.9379 -7.2121 47 1 3.2246 -1.8424 -7.6470 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084636677.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:02 Heat of formation + Delta-G solvation = 21.044159 kcal Electronic energy + Delta-G solvation = -31364.106279 eV Core-core repulsion = 27041.797075 eV Total energy + Delta-G solvation = -4322.309204 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 357.159 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.36173 -43.10368 -39.51111 -38.65489 -37.12871 -34.98250 -33.83281 -32.32725 -31.88930 -30.71515 -30.22421 -29.87198 -28.54500 -25.19650 -24.56711 -23.99956 -23.73318 -22.54920 -21.72908 -20.62069 -19.56207 -19.11688 -18.22774 -17.90062 -17.33337 -17.02492 -16.09303 -15.99913 -15.87932 -15.34611 -15.07542 -14.86259 -14.43355 -14.29206 -14.09063 -13.95573 -13.85311 -13.70115 -13.53847 -13.24868 -13.12881 -12.89235 -12.88745 -12.78349 -12.23158 -12.16139 -11.77841 -11.59872 -11.26548 -11.13596 -11.00034 -10.83748 -10.76725 -10.65380 -10.15062 -9.84369 -9.73337 -9.72494 -9.29486 -9.19061 -8.84143 -8.71991 -8.49181 -8.08712 -6.16673 -4.18973 0.29311 0.62551 1.74170 2.11942 2.18505 2.97266 3.26555 3.38247 3.43060 3.70682 3.86258 3.91149 4.11995 4.19762 4.28252 4.35307 4.45900 4.60228 4.61447 4.67542 4.87508 4.91856 5.06786 5.16520 5.17959 5.23264 5.33308 5.36594 5.38924 5.50933 5.52851 5.58777 5.66124 5.75895 5.78026 5.93168 5.98674 6.16144 6.20164 6.24204 6.35310 6.40778 6.53303 6.59804 6.82409 6.89053 7.23968 7.30998 7.54750 7.82257 8.22708 8.58315 8.80399 8.94544 9.43803 10.95607 Molecular weight = 357.16amu Principal moments of inertia in cm(-1) A = 0.010132 B = 0.002876 C = 0.002313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2762.941681 B = 9734.310479 C =12101.713079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.237 3.763 3 H 0.051 0.949 4 C -0.534 4.534 5 H 0.081 0.919 6 C 0.078 3.922 7 N -0.893 5.893 8 Si 0.885 3.115 9 H -0.276 1.276 10 H -0.294 1.294 11 H -0.261 1.261 12 N -0.685 5.685 13 C 0.590 3.410 14 O -0.543 6.543 15 C 0.016 3.984 16 N -0.260 5.260 17 N -0.238 5.238 18 C 0.128 3.872 19 C -0.070 4.070 20 C -0.135 4.135 21 C 0.104 3.896 22 F -0.134 7.134 23 C -0.136 4.136 24 C -0.088 4.088 25 C 0.006 3.994 26 C -0.136 4.136 27 C -0.042 4.042 28 C -0.121 4.121 29 C -0.114 4.114 30 C -0.045 4.045 31 H 0.053 0.947 32 H 0.048 0.952 33 H 0.037 0.963 34 H 0.267 0.733 35 H 0.401 0.599 36 H 0.148 0.852 37 H 0.148 0.852 38 H 0.147 0.853 39 H 0.143 0.857 40 H 0.088 0.912 41 H 0.077 0.923 42 H 0.064 0.936 43 H 0.070 0.930 44 H 0.072 0.928 45 H 0.069 0.931 46 H 0.081 0.919 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.614 -6.097 -27.023 28.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.133 3.867 3 H 0.069 0.931 4 C -0.572 4.572 5 H 0.099 0.901 6 C -0.125 4.125 7 N -0.530 5.530 8 Si 0.715 3.285 9 H -0.203 1.203 10 H -0.222 1.222 11 H -0.185 1.185 12 N -0.332 5.332 13 C 0.372 3.628 14 O -0.420 6.420 15 C -0.145 4.145 16 N -0.092 5.092 17 N -0.019 5.019 18 C 0.037 3.963 19 C -0.089 4.089 20 C -0.155 4.155 21 C 0.085 3.915 22 F -0.112 7.112 23 C -0.155 4.155 24 C -0.108 4.108 25 C -0.116 4.116 26 C -0.146 4.146 27 C -0.080 4.080 28 C -0.159 4.159 29 C -0.152 4.152 30 C -0.084 4.084 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.056 0.944 34 H 0.077 0.923 35 H 0.236 0.764 36 H 0.166 0.834 37 H 0.166 0.834 38 H 0.165 0.835 39 H 0.161 0.839 40 H 0.106 0.894 41 H 0.095 0.905 42 H 0.083 0.917 43 H 0.089 0.911 44 H 0.091 0.909 45 H 0.087 0.913 46 H 0.099 0.901 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.524 -6.350 -26.195 27.331 hybrid contribution -0.434 0.507 -0.018 0.668 sum 4.090 -5.843 -26.213 27.166 Atomic orbital electron populations 1.22453 0.99164 1.00951 0.99370 1.19159 0.90225 0.94711 0.82575 0.93149 1.21048 1.33195 1.14448 0.88482 0.90140 1.24827 0.95516 0.96723 0.95473 1.69875 1.44996 1.40106 0.98010 0.86877 0.80529 0.83634 0.77455 1.20296 1.22187 1.18542 1.46109 1.63736 1.14199 1.09181 1.16882 0.78428 0.85903 0.81565 1.90734 1.51869 1.14873 1.84533 1.22074 1.06039 0.90242 0.96183 1.74017 1.16759 1.17350 1.01026 1.42266 1.46620 1.06841 1.06177 1.17523 0.96373 0.82350 1.00028 1.20996 0.99578 0.89844 0.98502 1.21102 0.96856 0.98894 0.98627 1.17787 0.95583 0.80560 0.97606 1.91534 1.89360 1.42033 1.88322 1.20979 1.01625 0.90387 1.02557 1.20909 0.93975 0.98519 0.97380 1.21241 1.07957 0.86368 0.96068 1.19922 1.05852 0.97136 0.91642 1.20002 1.00944 0.90875 0.96188 1.21680 1.00789 0.98121 0.95285 1.21574 1.01236 0.93524 0.98867 1.20277 1.01184 0.99444 0.87479 0.92779 0.93368 0.94416 0.92323 0.76446 0.83413 0.83398 0.83482 0.83901 0.89382 0.90471 0.91702 0.91119 0.90915 0.91262 0.90089 0.90369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.71 8.96 37.16 0.33 -3.38 16 2 C 0.24 5.86 2.15 -69.08 -0.15 5.71 16 3 H 0.05 1.35 6.64 -51.93 -0.34 1.01 16 4 C -0.53 -14.89 9.31 -34.44 -0.32 -15.21 16 5 H 0.08 2.38 7.98 -52.49 -0.42 1.96 16 6 C 0.08 2.23 5.45 -17.82 -0.10 2.13 16 7 N -0.89 -26.88 13.96 55.43 0.77 -26.11 16 8 Si 0.89 22.04 24.37 -169.99 -4.14 17.90 16 9 H -0.28 -6.64 6.87 56.52 0.39 -6.25 16 10 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 11 H -0.26 -6.42 6.53 56.52 0.37 -6.05 16 12 N -0.68 -14.97 5.07 -55.93 -0.28 -15.25 16 13 C 0.59 12.36 7.79 -12.41 -0.10 12.26 16 14 O -0.54 -12.48 15.45 5.30 0.08 -12.40 16 15 C 0.02 0.28 7.12 -82.97 -0.59 -0.31 16 16 N -0.26 -4.26 11.46 33.29 0.38 -3.88 16 17 N -0.24 -3.17 3.43 -6.95 -0.02 -3.19 16 18 C 0.13 1.35 6.16 -83.60 -0.51 0.84 16 19 C -0.07 -0.67 9.75 -39.41 -0.38 -1.06 16 20 C -0.14 -1.08 10.02 -39.54 -0.40 -1.48 16 21 C 0.10 0.84 7.30 -39.39 -0.29 0.55 16 22 F -0.13 -1.16 17.27 2.25 0.04 -1.12 16 23 C -0.14 -0.94 10.02 -39.54 -0.40 -1.33 16 24 C -0.09 -0.70 8.93 -39.41 -0.35 -1.05 16 25 C 0.01 0.07 6.49 -82.11 -0.53 -0.46 16 26 C -0.14 -2.02 5.99 -104.87 -0.63 -2.65 16 27 C -0.04 -0.54 5.53 -27.79 -0.15 -0.69 16 28 C -0.12 -1.08 5.91 -26.43 -0.16 -1.24 16 29 C -0.11 -0.84 5.89 -26.47 -0.16 -1.00 16 30 C -0.05 -0.36 4.79 -27.68 -0.13 -0.49 16 31 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 32 H 0.05 1.13 3.27 -51.93 -0.17 0.96 16 33 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 35 H 0.40 8.27 8.27 -40.82 -0.34 7.93 16 36 H 0.15 1.47 8.06 -52.49 -0.42 1.05 16 37 H 0.15 0.90 8.06 -52.49 -0.42 0.48 16 38 H 0.15 0.66 8.06 -52.49 -0.42 0.23 16 39 H 0.14 0.92 6.50 -52.49 -0.34 0.58 16 40 H 0.09 1.28 7.67 -51.93 -0.40 0.88 16 41 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.06 0.57 8.12 -51.93 -0.42 0.15 16 43 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.07 0.55 8.11 -51.93 -0.42 0.13 16 46 H 0.08 0.51 7.31 -51.92 -0.38 0.13 16 47 H 0.08 0.53 8.13 -51.93 -0.42 0.11 16 LS Contribution 384.25 15.07 5.79 5.79 Total: -1.00 -33.11 384.25 -8.61 -41.72 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -6.22 Total: 5.39 kcal Atomic # 6 Polarization: -3.84 SS G_CDS: -5.01 Total: -8.85 kcal Atomic # 7 Polarization: -49.28 SS G_CDS: 0.85 Total: -48.43 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: 0.08 Total: -12.40 kcal Atomic # 9 Polarization: -1.16 SS G_CDS: 0.04 Total: -1.12 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.14 Total: 17.90 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.11 -8.61 -41.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084636677.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.765 kcal (2) G-P(sol) polarization free energy of solvation -33.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds