Wall clock time and date at job start Tue Mar 31 2020 05:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.46876 * 2 1 4 4 C 1.50705 * 109.47361 * 120.00009 * 2 1 3 5 5 H 1.08000 * 119.99601 * 119.99812 * 4 2 1 6 6 C 1.37876 * 119.99906 * 299.99973 * 4 2 1 7 7 N 1.31517 * 119.99971 * 179.97438 * 6 4 2 8 8 Si 1.86797 * 119.99943 * 0.02562 * 6 4 2 9 9 H 1.48505 * 109.47352 * 89.99976 * 8 6 4 10 10 H 1.48505 * 109.47208 * 210.00002 * 8 6 4 11 11 H 1.48506 * 109.47233 * 329.99860 * 8 6 4 12 12 N 1.46504 * 109.46968 * 240.00160 * 2 1 3 13 13 C 1.34772 * 119.99867 * 84.99894 * 12 2 1 14 14 O 1.21573 * 120.00620 * 359.97438 * 13 12 2 15 15 C 1.47663 * 119.99713 * 180.02562 * 13 12 2 16 16 N 1.32270 * 126.60178 * 0.02562 * 15 13 12 17 17 N 1.28861 * 110.19464 * 179.97438 * 16 15 13 18 18 C 1.40157 * 125.05600 * 179.97438 * 17 16 15 19 19 C 1.38850 * 120.04388 * 41.74734 * 18 17 16 20 20 C 1.38099 * 119.95966 * 179.79062 * 19 18 17 21 21 C 1.38499 * 120.03830 * 0.46905 * 20 19 18 22 22 F 1.35099 * 119.95226 * 179.76462 * 21 20 19 23 23 C 1.38496 * 120.08353 * 359.78723 * 21 20 19 24 24 C 1.38090 * 120.04476 * 359.97438 * 23 21 20 25 25 C 1.35107 * 109.88538 * 359.94187 * 17 16 15 26 26 C 1.35576 * 107.14131 * 0.11606 * 25 17 16 27 27 C 1.50385 * 124.58984 * 179.84443 * 26 25 17 28 28 C 1.53478 * 108.28280 * 343.73102 * 27 26 25 29 29 C 1.53105 * 109.51359 * 49.51347 * 28 27 26 30 30 C 1.50693 * 128.94257 * 180.22305 * 25 17 16 31 31 H 1.08999 * 109.46876 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46795 * 299.99518 * 1 2 3 33 33 H 1.08999 * 109.46971 * 59.99944 * 1 2 3 34 34 H 0.96997 * 119.99698 * 179.97438 * 7 6 4 35 35 H 0.97005 * 119.99858 * 264.99975 * 12 2 1 36 36 H 1.07998 * 120.02517 * 0.02562 * 19 18 17 37 37 H 1.08002 * 119.97851 * 180.23264 * 20 19 18 38 38 H 1.08001 * 119.97364 * 179.97438 * 23 21 20 39 39 H 1.08002 * 120.01887 * 180.02562 * 24 23 21 40 40 H 1.09001 * 109.69692 * 224.03811 * 27 26 25 41 41 H 1.08996 * 109.73811 * 103.45408 * 27 26 25 42 42 H 1.08996 * 109.46874 * 289.50358 * 28 27 26 43 43 H 1.08997 * 109.45960 * 169.52246 * 28 27 26 44 44 H 1.09002 * 109.43946 * 169.89561 * 29 28 27 45 45 H 1.09000 * 109.41676 * 49.98700 * 29 28 27 46 46 H 1.09008 * 109.68919 * 282.97827 * 30 25 17 47 47 H 1.08999 * 109.69131 * 43.55712 * 30 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1374 -0.8596 3.5566 8 14 0.6248 1.2790 2.6541 9 1 -0.8028 0.8725 2.6998 10 1 0.9760 1.9951 3.9068 11 1 0.8470 2.1764 1.4920 12 7 2.0183 -0.6906 -1.1962 13 6 2.1470 -0.0182 -2.3571 14 8 1.8574 1.1613 -2.4119 15 6 2.6386 -0.7145 -3.5629 16 7 2.9878 -1.9872 -3.6515 17 7 3.3692 -2.2613 -4.8515 18 6 3.8057 -3.5190 -5.2899 19 6 3.1422 -4.6673 -4.8788 20 6 3.5711 -5.9053 -5.3153 21 6 4.6685 -6.0025 -6.1548 22 9 5.0895 -7.2148 -6.5769 23 6 5.3348 -4.8585 -6.5615 24 6 4.9058 -3.6185 -6.1311 25 6 3.2849 -1.1563 -5.6242 26 6 2.8255 -0.1525 -4.8373 27 6 2.5879 1.2574 -5.3036 28 6 3.3191 1.4525 -6.6389 29 6 2.9688 0.3022 -7.5866 30 6 3.6168 -0.9946 -7.0852 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.9033 -0.5280 4.4375 35 1 2.2490 -1.6318 -1.1527 36 1 2.2888 -4.5922 -4.2212 37 1 3.0529 -6.7985 -4.9988 38 1 6.1906 -4.9364 -7.2158 39 1 5.4255 -2.7267 -6.4489 40 1 2.9771 1.9589 -4.5657 41 1 1.5197 1.4244 -5.4417 42 1 4.3951 1.4653 -6.4654 43 1 3.0121 2.3979 -7.0862 44 1 3.3392 0.5301 -8.5861 45 1 1.8865 0.1774 -7.6205 46 1 4.6980 -0.9379 -7.2121 47 1 3.2246 -1.8424 -7.6470 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084636677.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:01 Heat of formation + Delta-G solvation = 0.623919 kcal Electronic energy + Delta-G solvation = -31364.991767 eV Core-core repulsion = 27041.797075 eV Total energy + Delta-G solvation = -4323.194692 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 357.159 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -50.01495 -44.16739 -40.61995 -39.96587 -37.92539 -36.88141 -34.85612 -34.38491 -32.54179 -31.93809 -31.47976 -30.88588 -29.57445 -27.27317 -25.84609 -24.78844 -24.42635 -23.61786 -22.61177 -22.19978 -21.11572 -20.12127 -19.10620 -18.97684 -18.64352 -17.92437 -17.80146 -17.28714 -16.79558 -16.66101 -16.24393 -15.82565 -15.65429 -15.57242 -15.07256 -14.92408 -14.82080 -14.64895 -14.59505 -14.45583 -14.25848 -14.15410 -14.03888 -13.93199 -13.64480 -13.53888 -13.23879 -12.97707 -12.80870 -12.25416 -12.16944 -11.90082 -11.75268 -11.70882 -11.64849 -11.52640 -11.33166 -11.00429 -10.88605 -10.79939 -10.34726 -9.98544 -9.79838 -9.40335 -8.40102 -6.47304 -0.46797 0.01175 0.54165 1.02502 1.24416 1.27082 1.34771 1.45398 2.25129 2.27537 2.31117 2.37364 2.95460 3.07308 3.27943 3.41243 3.58702 3.66104 3.81302 3.99798 4.02190 4.05992 4.13016 4.23366 4.33366 4.41461 4.44737 4.53720 4.58196 4.62872 4.64724 4.70351 4.77259 4.89047 4.91690 4.93588 4.94678 5.02769 5.06581 5.13020 5.23914 5.28382 5.30322 5.37329 5.43825 5.49458 5.54675 5.56802 5.92527 6.09441 6.51565 6.61622 6.85751 7.12947 7.28693 8.75522 Molecular weight = 357.16amu Principal moments of inertia in cm(-1) A = 0.010132 B = 0.002876 C = 0.002313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2762.941681 B = 9734.310479 C =12101.713079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.243 3.757 3 H 0.029 0.971 4 C -0.538 4.538 5 H 0.050 0.950 6 C 0.029 3.971 7 N -0.933 5.933 8 Si 0.942 3.058 9 H -0.257 1.257 10 H -0.289 1.289 11 H -0.259 1.259 12 N -0.689 5.689 13 C 0.590 3.410 14 O -0.570 6.570 15 C -0.021 4.021 16 N -0.281 5.281 17 N -0.228 5.228 18 C 0.095 3.905 19 C -0.081 4.081 20 C -0.134 4.134 21 C 0.103 3.897 22 F -0.136 7.136 23 C -0.123 4.123 24 C -0.076 4.076 25 C 0.025 3.975 26 C -0.159 4.159 27 C -0.043 4.043 28 C -0.115 4.115 29 C -0.110 4.110 30 C -0.045 4.045 31 H 0.062 0.938 32 H 0.047 0.953 33 H 0.048 0.952 34 H 0.272 0.728 35 H 0.405 0.595 36 H 0.135 0.865 37 H 0.163 0.837 38 H 0.180 0.820 39 H 0.165 0.835 40 H 0.059 0.941 41 H 0.068 0.932 42 H 0.069 0.931 43 H 0.086 0.914 44 H 0.107 0.893 45 H 0.062 0.938 46 H 0.109 0.891 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.345 -6.440 -30.808 31.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.139 3.861 3 H 0.047 0.953 4 C -0.576 4.576 5 H 0.068 0.932 6 C -0.170 4.170 7 N -0.572 5.572 8 Si 0.769 3.231 9 H -0.182 1.182 10 H -0.216 1.216 11 H -0.184 1.184 12 N -0.337 5.337 13 C 0.376 3.624 14 O -0.448 6.448 15 C -0.180 4.180 16 N -0.115 5.115 17 N -0.009 5.009 18 C 0.005 3.995 19 C -0.100 4.100 20 C -0.154 4.154 21 C 0.083 3.917 22 F -0.115 7.115 23 C -0.142 4.142 24 C -0.096 4.096 25 C -0.098 4.098 26 C -0.168 4.168 27 C -0.081 4.081 28 C -0.152 4.152 29 C -0.148 4.148 30 C -0.083 4.083 31 H 0.081 0.919 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.081 0.919 35 H 0.240 0.760 36 H 0.153 0.847 37 H 0.180 0.820 38 H 0.197 0.803 39 H 0.182 0.818 40 H 0.078 0.922 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.105 0.895 44 H 0.125 0.875 45 H 0.081 0.919 46 H 0.127 0.873 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 5.254 -6.718 -29.996 31.185 hybrid contribution -0.532 0.413 1.067 1.262 sum 4.721 -6.305 -28.929 29.982 Atomic orbital electron populations 1.22341 0.97436 1.01676 0.99793 1.18858 0.91480 0.93257 0.82523 0.95288 1.21213 1.32691 1.13633 0.90095 0.93192 1.25595 0.96802 0.99599 0.95042 1.69984 1.46567 1.41948 0.98692 0.85952 0.79713 0.80002 0.77473 1.18214 1.21611 1.18355 1.45983 1.64463 1.14303 1.08987 1.17258 0.77473 0.85669 0.82042 1.90694 1.52951 1.16026 1.85174 1.21657 1.08951 0.91360 0.96027 1.73918 1.17644 1.16796 1.03094 1.42556 1.44967 1.08112 1.05313 1.17919 0.98288 0.81285 1.01963 1.20970 0.99711 0.90513 0.98852 1.21220 0.97048 0.98700 0.98389 1.17958 0.95474 0.80901 0.97331 1.91537 1.89322 1.42313 1.88281 1.21292 1.01784 0.89218 1.01866 1.21116 0.92696 0.99822 0.95987 1.21935 1.05280 0.84897 0.97732 1.20221 1.06949 0.98740 0.90913 1.20016 1.00890 0.89311 0.97884 1.21664 1.00402 0.99871 0.93273 1.21600 1.01011 0.92284 0.99897 1.20584 1.03122 1.00562 0.84072 0.91934 0.93480 0.93299 0.91903 0.76026 0.84705 0.81967 0.80299 0.81764 0.92216 0.91333 0.91259 0.89535 0.87477 0.91939 0.87250 0.88302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.13 8.96 71.98 0.65 -6.48 16 2 C 0.24 12.44 2.15 44.25 0.10 12.53 16 3 H 0.03 1.62 6.64 -2.39 -0.02 1.60 16 4 C -0.54 -31.21 9.31 25.60 0.24 -30.97 16 5 H 0.05 3.13 7.98 -2.91 -0.02 3.10 16 6 C 0.03 1.72 5.45 84.65 0.46 2.18 16 7 N -0.93 -57.60 13.96 21.45 0.30 -57.30 16 8 Si 0.94 45.77 24.37 68.60 1.67 47.44 16 9 H -0.26 -11.63 6.87 99.48 0.68 -10.95 16 10 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 11 H -0.26 -12.45 6.53 99.48 0.65 -11.80 16 12 N -0.69 -31.73 5.07 -449.14 -2.28 -34.00 16 13 C 0.59 26.09 7.79 86.73 0.68 26.77 16 14 O -0.57 -27.52 15.45 -3.95 -0.06 -27.58 16 15 C -0.02 -0.79 7.12 42.13 0.30 -0.49 16 16 N -0.28 -9.52 11.46 -48.61 -0.56 -10.08 16 17 N -0.23 -5.92 3.43 -175.91 -0.60 -6.53 16 18 C 0.09 1.86 6.16 38.10 0.23 2.10 16 19 C -0.08 -1.52 9.75 22.38 0.22 -1.30 16 20 C -0.13 -1.94 10.02 22.30 0.22 -1.72 16 21 C 0.10 1.36 7.30 22.39 0.16 1.52 16 22 F -0.14 -1.98 17.27 44.97 0.78 -1.20 16 23 C -0.12 -1.20 10.02 22.30 0.22 -0.97 16 24 C -0.08 -0.95 8.93 22.38 0.20 -0.75 16 25 C 0.02 0.57 6.49 41.44 0.27 0.84 16 26 C -0.16 -4.76 5.99 -20.02 -0.12 -4.88 16 27 C -0.04 -1.12 5.53 29.91 0.17 -0.95 16 28 C -0.11 -1.79 5.91 30.79 0.18 -1.61 16 29 C -0.11 -1.21 5.89 30.76 0.18 -1.03 16 30 C -0.05 -0.53 4.79 29.98 0.14 -0.39 16 31 H 0.06 2.73 8.14 -2.39 -0.02 2.71 16 32 H 0.05 2.17 3.27 -2.39 -0.01 2.16 16 33 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.27 15.62 8.31 -92.71 -0.77 14.84 16 35 H 0.40 17.81 8.27 -92.70 -0.77 17.05 16 36 H 0.14 2.82 8.06 -2.91 -0.02 2.80 16 37 H 0.16 1.76 8.06 -2.91 -0.02 1.74 16 38 H 0.18 0.64 8.06 -2.91 -0.02 0.62 16 39 H 0.16 1.32 6.50 -2.91 -0.02 1.30 16 40 H 0.06 1.85 7.67 -2.39 -0.02 1.83 16 41 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.07 1.04 8.12 -2.39 -0.02 1.02 16 43 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 45 H 0.06 0.80 8.11 -2.39 -0.02 0.78 16 46 H 0.11 0.77 7.31 -2.38 -0.02 0.75 16 47 H 0.10 0.85 8.13 -2.39 -0.02 0.83 16 Total: -1.00 -75.89 384.25 3.93 -71.96 By element: Atomic # 1 Polarization: 22.71 SS G_CDS: 0.18 Total: 22.88 kcal Atomic # 6 Polarization: -10.10 SS G_CDS: 4.50 Total: -5.60 kcal Atomic # 7 Polarization: -104.77 SS G_CDS: -3.14 Total: -107.90 kcal Atomic # 8 Polarization: -27.52 SS G_CDS: -0.06 Total: -27.58 kcal Atomic # 9 Polarization: -1.98 SS G_CDS: 0.78 Total: -1.20 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 1.67 Total: 47.44 kcal Total: -75.89 3.93 -71.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084636677.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.584 kcal (2) G-P(sol) polarization free energy of solvation -75.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds