Wall clock time and date at job start Tue Mar 31 2020 05:10:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.39764 * 125.83320 * 2 1 4 4 C 1.36101 * 107.82267 * 179.83202 * 3 2 1 5 5 N 1.39476 * 126.21410 * 180.11804 * 4 3 2 6 6 C 1.34779 * 119.99886 * 0.35599 * 5 4 3 7 7 O 1.21286 * 120.00073 * 0.02562 * 6 5 4 8 8 C 1.50705 * 119.99837 * 179.97438 * 6 5 4 9 9 C 1.50700 * 109.46828 * 180.02562 * 8 6 5 10 10 C 1.38301 * 119.92980 * 269.72927 * 9 8 6 11 11 C 1.38100 * 120.06875 * 179.73360 * 10 9 8 12 12 C 1.38877 * 119.92955 * 0.56002 * 11 10 9 13 13 O 1.35752 * 120.06867 * 179.69359 * 12 11 10 14 14 C 1.34828 * 116.99817 * 174.48760 * 13 12 11 15 15 H 1.08001 * 120.00622 * 5.05196 * 14 13 12 16 16 C 1.38658 * 119.99913 * 185.05249 * 14 13 12 17 17 N 1.31553 * 119.99960 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00026 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47313 * 90.00120 * 18 16 14 20 20 H 1.48503 * 109.47280 * 209.99741 * 18 16 14 21 21 H 1.48493 * 109.47226 * 330.00110 * 18 16 14 22 22 C 1.38880 * 119.86043 * 359.70861 * 12 11 10 23 23 C 1.38095 * 119.93213 * 0.02562 * 22 12 11 24 24 N 1.35257 * 107.57267 * 0.42214 * 4 3 2 25 25 C 1.46504 * 126.05122 * 179.77109 * 24 4 3 26 26 C 1.52998 * 109.47022 * 179.97438 * 25 24 4 27 27 C 1.53001 * 109.47002 * 299.98017 * 25 24 4 28 28 C 1.52997 * 109.47259 * 59.97975 * 25 24 4 29 29 N 1.30840 * 125.84341 * 180.30209 * 2 1 3 30 30 H 1.09003 * 109.46932 * 269.71689 * 1 2 3 31 31 H 1.08999 * 109.46883 * 149.72399 * 1 2 3 32 32 H 1.08998 * 109.47520 * 29.72293 * 1 2 3 33 33 H 1.08003 * 126.08661 * 359.97438 * 3 2 1 34 34 H 0.97000 * 119.99989 * 180.35648 * 5 4 3 35 35 H 1.08997 * 109.47100 * 300.00235 * 8 6 5 36 36 H 1.08993 * 109.47124 * 60.00355 * 8 6 5 37 37 H 1.08002 * 119.96426 * 359.97098 * 10 9 8 38 38 H 1.08005 * 120.03618 * 180.27349 * 11 10 9 39 39 H 0.96997 * 120.00434 * 179.97438 * 17 16 14 40 40 H 1.08006 * 120.03345 * 179.97438 * 22 12 11 41 41 H 1.07997 * 119.96444 * 179.97438 * 23 22 12 42 42 H 1.08994 * 109.47629 * 59.99884 * 26 25 24 43 43 H 1.09007 * 109.46858 * 179.97438 * 26 25 24 44 44 H 1.09002 * 109.46932 * 299.99272 * 26 25 24 45 45 H 1.09006 * 109.46935 * 60.00113 * 27 25 24 46 46 H 1.08997 * 109.47272 * 180.02562 * 27 25 24 47 47 H 1.09000 * 109.46818 * 300.00121 * 27 25 24 48 48 H 1.09003 * 109.47187 * 59.99804 * 28 25 24 49 49 H 1.08994 * 109.47485 * 179.97438 * 28 25 24 50 50 H 1.09006 * 109.47273 * 300.00252 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3253 1.1331 0.0000 4 6 3.6196 0.7123 0.0038 5 7 4.7512 1.5277 0.0074 6 6 4.6155 2.8686 0.0146 7 8 3.5094 3.3662 0.0184 8 6 5.8382 3.7496 0.0191 9 6 5.4151 5.1960 0.0275 10 6 5.2262 5.8667 -1.1672 11 6 4.8331 7.1905 -1.1629 12 6 4.6387 7.8517 0.0428 13 8 4.2584 9.1548 0.0504 14 6 3.9767 9.7032 1.2494 15 1 4.1363 9.1353 2.1541 16 6 3.4820 10.9966 1.3212 17 7 3.2879 11.6887 0.2194 18 14 3.0910 11.7562 2.9823 19 1 4.2943 12.4530 3.5036 20 1 1.9809 12.7311 2.8319 21 1 2.6869 10.6886 3.9321 22 6 4.8346 7.1770 1.2408 23 6 5.2223 5.8516 1.2298 24 7 3.6093 -0.6402 -0.0034 25 6 4.7871 -1.5114 -0.0073 26 6 4.3394 -2.9744 -0.0147 27 6 5.6266 -1.2285 -1.2547 28 6 5.6255 -1.2411 1.2437 29 7 2.2732 -1.0606 -0.0056 30 1 -0.3633 -0.0051 1.0277 31 1 -0.3633 -0.8875 -0.5181 32 1 -0.3634 0.8924 -0.5095 33 1 1.9901 2.1598 -0.0004 34 1 5.6358 1.1297 0.0048 35 1 6.4335 3.5404 0.9078 36 1 6.4331 3.5500 -0.8721 37 1 5.3826 5.3534 -2.1045 38 1 4.6815 7.7125 -2.0962 39 1 2.9415 12.5933 0.2695 40 1 4.6846 7.6885 2.1802 41 1 5.3752 5.3266 2.1611 42 1 3.7421 -3.1671 -0.9058 43 1 5.2158 -3.6225 -0.0180 44 1 3.7415 -3.1758 0.8742 45 1 5.9456 -0.1862 -1.2493 46 1 6.5027 -1.8769 -1.2579 47 1 5.0293 -1.4210 -2.1459 48 1 5.0274 -1.4426 2.1324 49 1 6.5016 -1.8896 1.2411 50 1 5.9445 -0.1988 1.2491 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095394684.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:32 Heat of formation + Delta-G solvation = 42.395306 kcal Electronic energy + Delta-G solvation = -31219.821887 eV Core-core repulsion = 27021.898844 eV Total energy + Delta-G solvation = -4197.923044 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 357.184 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.81133 -39.80009 -38.80331 -37.30593 -36.57405 -34.89921 -32.52562 -31.98012 -31.46678 -30.16370 -29.11466 -28.01788 -28.00287 -27.51438 -26.65029 -25.14997 -22.67084 -21.98312 -21.28177 -20.61793 -20.07027 -19.61034 -17.98394 -17.21566 -16.93008 -16.80579 -15.98739 -15.76396 -15.30914 -14.78734 -14.59856 -14.54823 -14.36292 -14.13990 -14.07023 -13.71515 -13.59365 -13.40692 -13.22296 -13.11193 -12.75500 -12.69257 -12.68215 -12.60937 -12.51695 -12.31089 -12.16995 -11.95498 -11.65070 -11.59374 -11.55102 -11.27093 -10.90405 -10.86212 -10.79192 -10.62454 -10.51717 -10.42250 -9.76643 -9.32444 -8.87834 -8.81907 -8.15986 -8.11977 -7.18393 -6.43980 -4.02502 1.66527 1.91986 2.24781 2.28703 2.56186 2.91602 2.98720 3.13775 3.15491 3.20071 3.97406 3.97965 4.23498 4.33863 4.41786 4.63340 4.73764 4.87523 4.92399 5.02937 5.07166 5.10067 5.15162 5.16896 5.19480 5.22547 5.30337 5.31123 5.41717 5.54182 5.55189 5.57961 5.63876 5.70192 5.70410 5.77870 5.81693 5.83042 5.98011 6.16640 6.21651 6.40841 6.68831 6.77730 6.89660 6.94415 7.05153 7.18955 7.23762 7.35193 7.45034 7.75342 7.82820 8.01102 8.04191 9.01633 9.71504 10.73963 Molecular weight = 357.18amu Principal moments of inertia in cm(-1) A = 0.016637 B = 0.001978 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.585718 B =14154.685662 C =14879.368170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.082 3.918 3 C -0.281 4.281 4 C 0.314 3.686 5 N -0.660 5.660 6 C 0.511 3.489 7 O -0.480 6.480 8 C -0.072 4.072 9 C -0.177 4.177 10 C -0.057 4.057 11 C -0.191 4.191 12 C 0.159 3.841 13 O -0.176 6.176 14 C -0.391 4.391 15 H 0.092 0.908 16 C 0.039 3.961 17 N -0.862 5.862 18 Si 0.941 3.059 19 H -0.273 1.273 20 H -0.277 1.277 21 H -0.267 1.267 22 C -0.233 4.233 23 C -0.054 4.054 24 N -0.382 5.382 25 C 0.178 3.822 26 C -0.137 4.137 27 C -0.164 4.164 28 C -0.164 4.164 29 N -0.295 5.295 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.172 0.828 34 H 0.405 0.595 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.109 0.891 38 H 0.117 0.883 39 H 0.270 0.730 40 H 0.127 0.873 41 H 0.104 0.896 42 H 0.069 0.931 43 H 0.070 0.930 44 H 0.069 0.931 45 H 0.059 0.941 46 H 0.082 0.918 47 H 0.069 0.931 48 H 0.069 0.931 49 H 0.082 0.918 50 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.111 -27.863 -0.061 28.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.084 4.084 3 C -0.312 4.312 4 C 0.095 3.905 5 N -0.311 5.311 6 C 0.298 3.702 7 O -0.350 6.350 8 C -0.112 4.112 9 C -0.178 4.178 10 C -0.075 4.075 11 C -0.211 4.211 12 C 0.104 3.896 13 O -0.080 6.080 14 C -0.467 4.467 15 H 0.110 0.890 16 C -0.165 4.165 17 N -0.497 5.497 18 Si 0.766 3.234 19 H -0.199 1.199 20 H -0.202 1.202 21 H -0.192 1.192 22 C -0.252 4.252 23 C -0.072 4.072 24 N -0.170 5.170 25 C 0.095 3.905 26 C -0.195 4.195 27 C -0.222 4.222 28 C -0.222 4.222 29 N -0.118 5.118 30 H 0.094 0.906 31 H 0.088 0.912 32 H 0.097 0.903 33 H 0.189 0.811 34 H 0.243 0.757 35 H 0.115 0.885 36 H 0.115 0.885 37 H 0.127 0.873 38 H 0.135 0.865 39 H 0.080 0.920 40 H 0.145 0.855 41 H 0.122 0.878 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.088 0.912 45 H 0.078 0.922 46 H 0.101 0.899 47 H 0.088 0.912 48 H 0.088 0.912 49 H 0.101 0.899 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.369 -28.332 -0.310 28.838 hybrid contribution 0.397 1.001 0.904 1.406 sum 5.767 -27.331 0.595 27.939 Atomic orbital electron populations 1.20160 0.86688 1.03183 1.02883 1.22227 0.96915 0.90714 0.98557 1.21604 0.88982 1.01300 1.19339 1.18047 0.89072 0.82192 1.01162 1.43520 1.06825 1.06409 1.74349 1.21368 0.92868 0.80326 0.75624 1.90702 1.26939 1.73036 1.44305 1.20381 0.94006 0.92530 1.04285 1.18536 1.12616 0.92788 0.93870 1.20394 0.97402 0.93466 0.96267 1.20154 1.09941 0.94764 0.96201 1.19393 0.91723 0.85147 0.93287 1.83977 1.72866 1.18176 1.32939 1.21333 1.44339 0.98034 0.83027 0.89038 1.25296 0.96315 0.95617 0.99320 1.70035 1.41645 1.10818 1.27171 0.85710 0.78454 0.79104 0.80164 1.19896 1.20238 1.19170 1.21102 1.10070 0.95526 0.98482 1.20499 0.96708 0.93923 0.96056 1.48795 1.05509 1.01720 1.61009 1.20698 0.82265 0.91436 0.96123 1.21825 1.01806 0.91703 1.04141 1.22338 1.00310 1.02399 0.97183 1.22339 1.00326 1.02433 0.97149 1.77308 0.84922 1.21598 1.27938 0.90614 0.91175 0.90264 0.81059 0.75706 0.88545 0.88501 0.87340 0.86485 0.92012 0.85535 0.87790 0.91234 0.91076 0.91234 0.92249 0.89880 0.91195 0.91207 0.89878 0.92250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.70 10.44 36.01 0.38 -0.32 16 2 C 0.08 1.09 7.21 -82.44 -0.59 0.50 16 3 C -0.28 -4.17 9.58 -39.78 -0.38 -4.55 16 4 C 0.31 4.06 7.00 -153.16 -1.07 2.98 16 5 N -0.66 -7.00 4.72 -11.46 -0.05 -7.06 16 6 C 0.51 6.79 7.79 -10.98 -0.09 6.70 16 7 O -0.48 -8.58 13.16 5.55 0.07 -8.51 16 8 C -0.07 -0.82 5.83 -29.03 -0.17 -0.99 16 9 C -0.18 -2.92 4.38 -104.58 -0.46 -3.38 16 10 C -0.06 -1.01 9.69 -39.61 -0.38 -1.40 16 11 C -0.19 -4.10 9.99 -39.40 -0.39 -4.49 16 12 C 0.16 3.88 6.65 -39.11 -0.26 3.62 16 13 O -0.18 -5.09 9.76 0.05 0.00 -5.09 16 14 C -0.39 -11.03 9.49 30.89 0.29 -10.74 16 15 H 0.09 2.39 5.20 -52.49 -0.27 2.12 16 16 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 17 N -0.86 -25.44 13.67 55.48 0.76 -24.68 16 18 Si 0.94 20.70 29.55 -169.99 -5.02 15.68 16 19 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 20 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 21 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 22 C -0.23 -5.11 9.17 -39.40 -0.36 -5.47 16 23 C -0.05 -0.98 9.69 -39.61 -0.38 -1.36 16 24 N -0.38 -4.35 3.47 -47.71 -0.17 -4.52 16 25 C 0.18 1.34 1.06 -131.82 -0.14 1.21 16 26 C -0.14 -0.93 7.98 37.16 0.30 -0.64 16 27 C -0.16 -0.96 8.47 37.16 0.31 -0.65 16 28 C -0.16 -0.97 8.47 37.16 0.31 -0.66 16 29 N -0.29 -3.87 11.63 33.65 0.39 -3.48 16 30 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.17 2.88 5.83 -52.48 -0.31 2.58 16 34 H 0.41 2.89 4.93 -40.82 -0.20 2.69 16 35 H 0.10 0.84 8.08 -51.93 -0.42 0.42 16 36 H 0.10 0.83 8.08 -51.93 -0.42 0.41 16 37 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 38 H 0.12 2.42 8.06 -52.48 -0.42 2.00 16 39 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 40 H 0.13 2.79 5.64 -52.48 -0.30 2.49 16 41 H 0.10 1.62 8.06 -52.49 -0.42 1.20 16 42 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.06 0.34 5.88 -51.93 -0.31 0.03 16 46 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 47 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 49 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 50 H 0.06 0.34 5.88 -51.93 -0.31 0.03 16 LS Contribution 409.10 15.07 6.17 6.17 Total: -1.00 -35.36 409.10 -8.20 -43.56 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -7.16 Total: 6.59 kcal Atomic # 6 Polarization: -15.47 SS G_CDS: -3.18 Total: -18.66 kcal Atomic # 7 Polarization: -40.67 SS G_CDS: 0.93 Total: -39.74 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: 0.07 Total: -13.59 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -35.36 -8.20 -43.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095394684.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.953 kcal (2) G-P(sol) polarization free energy of solvation -35.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds