Wall clock time and date at job start Tue Mar 31 2020 05:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00402 * 2 1 4 4 H 1.48492 * 109.47340 * 270.00634 * 3 2 1 5 5 H 1.48501 * 109.46665 * 30.00285 * 3 2 1 6 6 H 1.48501 * 109.47278 * 150.00055 * 3 2 1 7 7 C 1.38815 * 119.99737 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00095 * 163.07357 * 7 2 1 9 9 N 1.36936 * 120.00240 * 343.07318 * 7 2 1 10 10 C 1.46928 * 120.62840 * 331.85003 * 9 7 2 11 11 C 1.53197 * 108.76994 * 233.58400 * 10 9 7 12 12 C 1.53034 * 109.31468 * 305.36416 * 11 10 9 13 13 N 1.46500 * 109.46047 * 181.38919 * 12 11 10 14 14 C 1.34779 * 120.00324 * 154.97054 * 13 12 11 15 15 O 1.21586 * 119.99712 * 0.02562 * 14 13 12 16 16 N 1.34774 * 120.00028 * 179.97438 * 14 13 12 17 17 C 1.46506 * 119.99538 * 179.97438 * 16 14 13 18 18 C 1.53003 * 109.46845 * 180.02562 * 17 16 14 19 19 C 1.50699 * 109.47313 * 180.02562 * 18 17 16 20 20 C 1.34001 * 124.92271 * 90.62389 * 19 18 17 21 21 C 1.46776 * 106.18593 * 180.02562 * 20 19 18 22 22 C 1.39409 * 134.37491 * 179.31117 * 21 20 19 23 23 C 1.36736 * 119.72010 * 180.02562 * 22 21 20 24 24 C 1.38742 * 120.41487 * 0.02562 * 23 22 21 25 25 C 1.37849 * 120.68458 * 359.97438 * 24 23 22 26 26 C 1.38938 * 119.81933 * 0.27426 * 25 24 23 27 27 O 1.34447 * 124.92199 * 269.98133 * 19 18 17 28 28 C 1.53035 * 109.52732 * 61.37441 * 12 11 10 29 29 C 1.46927 * 120.63053 * 151.82403 * 9 7 2 30 30 H 0.96995 * 119.99672 * 359.97438 * 1 2 3 31 31 H 1.08997 * 109.58880 * 113.79756 * 10 9 7 32 32 H 1.08998 * 109.70252 * 353.43552 * 10 9 7 33 33 H 1.09005 * 109.49539 * 185.41285 * 11 10 9 34 34 H 1.09001 * 109.49910 * 65.31833 * 11 10 9 35 35 H 1.09001 * 109.46175 * 301.35816 * 12 11 10 36 36 H 0.97004 * 119.99890 * 334.97371 * 13 12 11 37 37 H 0.96990 * 120.00187 * 0.02562 * 16 14 13 38 38 H 1.08998 * 109.47052 * 60.00831 * 17 16 14 39 39 H 1.08992 * 109.47215 * 300.00462 * 17 16 14 40 40 H 1.09003 * 109.46659 * 59.99994 * 18 17 16 41 41 H 1.08996 * 109.47297 * 300.00622 * 18 17 16 42 42 H 1.08002 * 126.90445 * 359.37141 * 20 19 18 43 43 H 1.08008 * 120.13647 * 0.03022 * 22 21 20 44 44 H 1.07996 * 119.78967 * 180.02562 * 23 22 21 45 45 H 1.08002 * 119.65283 * 179.97438 * 24 23 22 46 46 H 1.08007 * 120.08770 * 180.02562 * 25 24 23 47 47 H 1.08999 * 109.50063 * 58.57890 * 28 12 11 48 48 H 1.08998 * 109.49849 * 178.67600 * 28 12 11 49 49 H 1.08998 * 109.58619 * 246.19932 * 29 9 7 50 50 H 1.08992 * 109.58758 * 6.48465 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0551 -1.2224 -0.2729 9 7 1.3700 -2.3626 0.3442 10 6 0.2260 -2.3409 1.2659 11 6 0.4974 -3.3210 2.4116 12 6 0.8119 -4.7022 1.8324 13 7 1.0394 -5.6499 2.9262 14 6 0.8354 -6.9676 2.7297 15 8 0.4629 -7.3698 1.6444 16 7 1.0452 -7.8394 3.7358 17 6 0.8229 -9.2716 3.5222 18 6 1.1306 -10.0335 4.8129 19 6 0.9025 -11.5068 4.5931 20 6 1.8353 -12.3736 4.1756 21 6 1.1747 -13.6823 4.1035 22 6 1.5852 -14.9626 3.7351 23 6 0.6949 -15.9994 3.7808 24 6 -0.6131 -15.7844 4.1906 25 6 -1.0371 -14.5254 4.5585 26 6 -0.1498 -13.4572 4.5143 27 8 -0.2631 -12.1444 4.7992 28 6 2.0674 -4.6179 0.9614 29 6 1.8138 -3.6528 -0.2010 30 1 -0.4849 0.8400 0.0004 31 1 -0.6771 -2.6410 0.7345 32 1 0.0967 -1.3360 1.6676 33 1 -0.3833 -3.3864 3.0507 34 1 1.3471 -2.9700 2.9971 35 1 -0.0283 -5.0418 1.2266 36 1 1.3368 -5.3290 3.7919 37 1 1.3427 -7.5185 4.6014 38 1 1.4773 -9.6261 2.7259 39 1 -0.2164 -9.4399 3.2403 40 1 0.4758 -9.6788 5.6089 41 1 2.1698 -9.8652 5.0952 42 1 2.8634 -12.1516 3.9304 43 1 2.6023 -15.1349 3.4151 44 1 1.0118 -16.9918 3.4961 45 1 -1.3062 -16.6121 4.2216 46 1 -2.0574 -14.3690 4.8763 47 1 2.9022 -4.2545 1.5607 48 1 2.3044 -5.6064 0.5681 49 1 1.0401 -4.0599 -0.8520 50 1 2.7331 -3.5125 -0.7694 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095399897.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:53 Heat of formation + Delta-G solvation = 16.229982 kcal Electronic energy + Delta-G solvation = -30045.012823 eV Core-core repulsion = 25845.955166 eV Total energy + Delta-G solvation = -4199.057657 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 357.184 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.85975 -39.97957 -38.33885 -37.56734 -35.77959 -34.32841 -33.47687 -32.28901 -31.55676 -30.81455 -30.07817 -29.36497 -28.14504 -25.14060 -24.11046 -23.16626 -22.25930 -22.11289 -21.86840 -21.33644 -20.58387 -19.42707 -18.18063 -17.75805 -17.19150 -16.90689 -16.58025 -16.14364 -15.72648 -15.69618 -14.88849 -14.60783 -14.57224 -14.27807 -14.22613 -14.00738 -13.66474 -13.51705 -13.48725 -12.96864 -12.96127 -12.79802 -12.62597 -12.39567 -12.34167 -12.29626 -11.80657 -11.43180 -11.32294 -11.10502 -10.83825 -10.69715 -10.50344 -10.48413 -10.25638 -10.05258 -10.01214 -9.73772 -9.52627 -9.22572 -9.02956 -8.59884 -8.55693 -8.42562 -6.66490 -5.78471 -3.20352 0.48019 0.95745 1.89322 2.21767 2.81187 3.31601 3.36272 3.37871 3.44877 3.47042 3.91661 4.24320 4.36695 4.46821 4.49236 4.50554 4.56451 4.68859 4.77852 4.85399 5.01366 5.06339 5.24721 5.35610 5.42498 5.44025 5.51801 5.52979 5.61248 5.64456 5.79178 5.84746 5.92034 6.01755 6.02978 6.10580 6.25543 6.31242 6.33678 6.37802 6.51334 6.59779 6.63261 6.78763 6.82589 6.90264 7.00928 7.10947 7.33699 7.63535 7.80402 8.13239 8.45922 8.74514 9.22112 9.85471 10.42762 11.30527 Molecular weight = 357.18amu Principal moments of inertia in cm(-1) A = 0.036103 B = 0.001359 C = 0.001351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.379694 B =20603.278943 C =20725.588903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.002 3.998 3 Si 0.902 3.098 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.252 4.252 8 H 0.065 0.935 9 N -0.592 5.592 10 C 0.175 3.825 11 C -0.146 4.146 12 C 0.168 3.832 13 N -0.738 5.738 14 C 0.702 3.298 15 O -0.589 6.589 16 N -0.753 5.753 17 C 0.144 3.856 18 C -0.057 4.057 19 C 0.042 3.958 20 C -0.200 4.200 21 C -0.130 4.130 22 C -0.071 4.071 23 C -0.137 4.137 24 C -0.095 4.095 25 C -0.107 4.107 26 C 0.053 3.947 27 O -0.190 6.190 28 C -0.139 4.139 29 C 0.147 3.853 30 H 0.254 0.746 31 H 0.021 0.979 32 H 0.091 0.909 33 H 0.054 0.946 34 H 0.059 0.941 35 H 0.081 0.919 36 H 0.391 0.609 37 H 0.395 0.605 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.093 0.907 41 H 0.105 0.895 42 H 0.160 0.840 43 H 0.128 0.872 44 H 0.129 0.871 45 H 0.135 0.865 46 H 0.132 0.868 47 H 0.057 0.943 48 H 0.054 0.946 49 H 0.020 0.980 50 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.011 -29.228 14.861 32.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.196 4.196 3 Si 0.731 3.269 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.382 4.382 8 H 0.083 0.917 9 N -0.315 5.315 10 C 0.048 3.952 11 C -0.186 4.186 12 C 0.065 3.935 13 N -0.392 5.392 14 C 0.402 3.598 15 O -0.466 6.466 16 N -0.411 5.411 17 C 0.019 3.981 18 C -0.094 4.094 19 C -0.006 4.006 20 C -0.219 4.219 21 C -0.131 4.131 22 C -0.090 4.090 23 C -0.155 4.155 24 C -0.113 4.113 25 C -0.125 4.125 26 C 0.005 3.995 27 O -0.092 6.092 28 C -0.179 4.179 29 C 0.020 3.980 30 H 0.064 0.936 31 H 0.039 0.961 32 H 0.109 0.891 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.099 0.901 36 H 0.224 0.776 37 H 0.228 0.772 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.112 0.888 41 H 0.124 0.876 42 H 0.178 0.822 43 H 0.145 0.855 44 H 0.147 0.853 45 H 0.153 0.847 46 H 0.150 0.850 47 H 0.075 0.925 48 H 0.073 0.927 49 H 0.038 0.962 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.298 -29.305 13.894 32.458 hybrid contribution 0.819 1.040 0.820 1.557 sum 2.117 -28.266 14.714 31.936 Atomic orbital electron populations 1.70026 1.05254 1.25501 1.53988 1.25047 0.95273 0.98395 1.00924 0.86311 0.79129 0.83680 0.77736 1.21395 1.21585 1.20527 1.19184 0.92576 0.84778 1.41642 0.91689 1.44088 1.35810 1.01665 1.49964 1.20737 0.88926 0.97845 0.87685 1.22545 1.00471 0.94751 1.00836 1.20919 0.98366 0.87488 0.86767 1.45545 1.72636 1.04848 1.16137 1.15978 0.78570 0.81293 0.83970 1.90936 1.53330 1.78014 1.24332 1.45042 1.75110 1.06453 1.14457 1.21058 1.02464 0.78816 0.95783 1.20419 1.04296 0.85397 0.99307 1.21938 0.83175 0.94534 1.00913 1.22289 1.00805 0.90572 1.08233 1.19963 0.93732 0.94817 1.04556 1.20322 1.00067 0.90364 0.98198 1.20802 0.93618 0.99231 1.01827 1.20949 0.96347 0.95709 0.98322 1.19983 0.98971 0.89492 1.04052 1.19634 0.95544 0.82882 1.01399 1.83962 1.34574 1.18701 1.71980 1.22387 0.97237 0.99485 0.98839 1.20881 0.97893 0.86522 0.92694 0.93622 0.96093 0.89057 0.92779 0.92228 0.90075 0.77608 0.77175 0.90983 0.91150 0.88821 0.87648 0.82247 0.85454 0.85302 0.84736 0.84982 0.92465 0.92720 0.96162 0.92599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.07 11.19 55.49 0.62 -25.45 16 2 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 16 3 Si 0.90 21.50 29.59 -169.99 -5.03 16.47 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 7 C -0.25 -6.90 9.58 -15.06 -0.14 -7.04 16 8 H 0.07 1.75 7.88 -52.49 -0.41 1.33 16 9 N -0.59 -14.85 2.99 -172.32 -0.52 -15.36 16 10 C 0.17 4.10 5.30 -3.71 -0.02 4.08 16 11 C -0.15 -2.66 5.55 -26.61 -0.15 -2.81 16 12 C 0.17 2.96 2.42 -67.89 -0.16 2.80 16 13 N -0.74 -10.27 5.08 -58.64 -0.30 -10.57 16 14 C 0.70 10.37 8.53 -86.92 -0.74 9.62 16 15 O -0.59 -11.47 16.01 5.29 0.08 -11.39 16 16 N -0.75 -7.43 5.56 -65.22 -0.36 -7.80 16 17 C 0.14 1.33 5.66 -4.04 -0.02 1.31 16 18 C -0.06 -0.35 5.83 -27.88 -0.16 -0.51 16 19 C 0.04 0.37 6.49 -35.80 -0.23 0.14 16 20 C -0.20 -1.70 11.01 -37.62 -0.41 -2.11 16 21 C -0.13 -1.23 6.40 -105.16 -0.67 -1.91 16 22 C -0.07 -0.55 10.05 -39.69 -0.40 -0.94 16 23 C -0.14 -0.87 9.98 -39.94 -0.40 -1.27 16 24 C -0.10 -0.60 10.01 -39.54 -0.40 -1.00 16 25 C -0.11 -0.85 10.07 -39.46 -0.40 -1.24 16 26 C 0.05 0.53 7.42 -38.48 -0.29 0.25 16 27 O -0.19 -2.01 10.58 3.91 0.04 -1.97 16 28 C -0.14 -2.58 5.65 -26.61 -0.15 -2.73 16 29 C 0.15 3.20 6.52 -3.71 -0.02 3.18 16 30 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 31 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.09 2.38 6.07 -51.93 -0.31 2.06 16 33 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.08 1.63 7.58 -51.93 -0.39 1.24 16 36 H 0.39 4.20 8.62 -40.82 -0.35 3.85 16 37 H 0.39 2.52 8.49 -40.82 -0.35 2.18 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.11 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.16 1.00 8.06 -52.49 -0.42 0.57 16 43 H 0.13 0.71 8.06 -52.48 -0.42 0.29 16 44 H 0.13 0.50 8.06 -52.49 -0.42 0.08 16 45 H 0.13 0.48 8.06 -52.49 -0.42 0.06 16 46 H 0.13 0.81 8.06 -52.48 -0.42 0.38 16 47 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 48 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 49 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 50 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 LS Contribution 410.27 15.07 6.18 6.18 Total: -1.00 -34.63 410.27 -11.84 -46.47 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -7.71 Total: 3.63 kcal Atomic # 6 Polarization: 4.64 SS G_CDS: -4.86 Total: -0.22 kcal Atomic # 7 Polarization: -58.62 SS G_CDS: -0.56 Total: -59.18 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: 0.13 Total: -13.36 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.03 Total: 16.47 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -34.63 -11.84 -46.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095399897.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.699 kcal (2) G-P(sol) polarization free energy of solvation -34.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds