Wall clock time and date at job start Tue Mar 31 2020 05:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00402 * 2 1 4 4 H 1.48492 * 109.47340 * 270.00634 * 3 2 1 5 5 H 1.48501 * 109.46665 * 30.00285 * 3 2 1 6 6 H 1.48501 * 109.47278 * 150.00055 * 3 2 1 7 7 C 1.38815 * 119.99737 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00095 * 163.07357 * 7 2 1 9 9 N 1.36936 * 120.00240 * 343.07318 * 7 2 1 10 10 C 1.46928 * 120.62840 * 331.85003 * 9 7 2 11 11 C 1.53197 * 108.76994 * 233.58400 * 10 9 7 12 12 C 1.53034 * 109.31468 * 305.36416 * 11 10 9 13 13 N 1.46500 * 109.46047 * 181.38919 * 12 11 10 14 14 C 1.34779 * 120.00324 * 154.97054 * 13 12 11 15 15 O 1.21586 * 119.99712 * 0.02562 * 14 13 12 16 16 N 1.34774 * 120.00028 * 179.97438 * 14 13 12 17 17 C 1.46506 * 119.99538 * 179.97438 * 16 14 13 18 18 C 1.53003 * 109.46845 * 180.02562 * 17 16 14 19 19 C 1.50699 * 109.47313 * 180.02562 * 18 17 16 20 20 C 1.34001 * 124.92271 * 90.62389 * 19 18 17 21 21 C 1.46776 * 106.18593 * 180.02562 * 20 19 18 22 22 C 1.39409 * 134.37491 * 179.31117 * 21 20 19 23 23 C 1.36736 * 119.72010 * 180.02562 * 22 21 20 24 24 C 1.38742 * 120.41487 * 0.02562 * 23 22 21 25 25 C 1.37849 * 120.68458 * 359.97438 * 24 23 22 26 26 C 1.38938 * 119.81933 * 0.27426 * 25 24 23 27 27 O 1.34447 * 124.92199 * 269.98133 * 19 18 17 28 28 C 1.53035 * 109.52732 * 61.37441 * 12 11 10 29 29 C 1.46927 * 120.63053 * 151.82403 * 9 7 2 30 30 H 0.96995 * 119.99672 * 359.97438 * 1 2 3 31 31 H 1.08997 * 109.58880 * 113.79756 * 10 9 7 32 32 H 1.08998 * 109.70252 * 353.43552 * 10 9 7 33 33 H 1.09005 * 109.49539 * 185.41285 * 11 10 9 34 34 H 1.09001 * 109.49910 * 65.31833 * 11 10 9 35 35 H 1.09001 * 109.46175 * 301.35816 * 12 11 10 36 36 H 0.97004 * 119.99890 * 334.97371 * 13 12 11 37 37 H 0.96990 * 120.00187 * 0.02562 * 16 14 13 38 38 H 1.08998 * 109.47052 * 60.00831 * 17 16 14 39 39 H 1.08992 * 109.47215 * 300.00462 * 17 16 14 40 40 H 1.09003 * 109.46659 * 59.99994 * 18 17 16 41 41 H 1.08996 * 109.47297 * 300.00622 * 18 17 16 42 42 H 1.08002 * 126.90445 * 359.37141 * 20 19 18 43 43 H 1.08008 * 120.13647 * 0.03022 * 22 21 20 44 44 H 1.07996 * 119.78967 * 180.02562 * 23 22 21 45 45 H 1.08002 * 119.65283 * 179.97438 * 24 23 22 46 46 H 1.08007 * 120.08770 * 180.02562 * 25 24 23 47 47 H 1.08999 * 109.50063 * 58.57890 * 28 12 11 48 48 H 1.08998 * 109.49849 * 178.67600 * 28 12 11 49 49 H 1.08998 * 109.58619 * 246.19932 * 29 9 7 50 50 H 1.08992 * 109.58758 * 6.48465 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0551 -1.2224 -0.2729 9 7 1.3700 -2.3626 0.3442 10 6 0.2260 -2.3409 1.2659 11 6 0.4974 -3.3210 2.4116 12 6 0.8119 -4.7022 1.8324 13 7 1.0394 -5.6499 2.9262 14 6 0.8354 -6.9676 2.7297 15 8 0.4629 -7.3698 1.6444 16 7 1.0452 -7.8394 3.7358 17 6 0.8229 -9.2716 3.5222 18 6 1.1306 -10.0335 4.8129 19 6 0.9025 -11.5068 4.5931 20 6 1.8353 -12.3736 4.1756 21 6 1.1747 -13.6823 4.1035 22 6 1.5852 -14.9626 3.7351 23 6 0.6949 -15.9994 3.7808 24 6 -0.6131 -15.7844 4.1906 25 6 -1.0371 -14.5254 4.5585 26 6 -0.1498 -13.4572 4.5143 27 8 -0.2631 -12.1444 4.7992 28 6 2.0674 -4.6179 0.9614 29 6 1.8138 -3.6528 -0.2010 30 1 -0.4849 0.8400 0.0004 31 1 -0.6771 -2.6410 0.7345 32 1 0.0967 -1.3360 1.6676 33 1 -0.3833 -3.3864 3.0507 34 1 1.3471 -2.9700 2.9971 35 1 -0.0283 -5.0418 1.2266 36 1 1.3368 -5.3290 3.7919 37 1 1.3427 -7.5185 4.6014 38 1 1.4773 -9.6261 2.7259 39 1 -0.2164 -9.4399 3.2403 40 1 0.4758 -9.6788 5.6089 41 1 2.1698 -9.8652 5.0952 42 1 2.8634 -12.1516 3.9304 43 1 2.6023 -15.1349 3.4151 44 1 1.0118 -16.9918 3.4961 45 1 -1.3062 -16.6121 4.2216 46 1 -2.0574 -14.3690 4.8763 47 1 2.9022 -4.2545 1.5607 48 1 2.3044 -5.6064 0.5681 49 1 1.0401 -4.0599 -0.8520 50 1 2.7331 -3.5125 -0.7694 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095399897.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:52 Heat of formation + Delta-G solvation = -5.661237 kcal Electronic energy + Delta-G solvation = -30045.962098 eV Core-core repulsion = 25845.955166 eV Total energy + Delta-G solvation = -4200.006932 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 357.184 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.46876 -41.19301 -39.17025 -38.84742 -36.76661 -35.88824 -34.31123 -33.78729 -32.52654 -31.69695 -31.36459 -30.99702 -28.90374 -26.88081 -25.03881 -23.95645 -23.79717 -23.43397 -22.67142 -22.03900 -21.70594 -21.04009 -19.44237 -18.61174 -18.33855 -17.82895 -17.54293 -17.10014 -16.81925 -16.61439 -16.36291 -15.79955 -15.55674 -15.36788 -15.31958 -15.16623 -14.99318 -14.75274 -14.59447 -14.29225 -14.05266 -14.01849 -13.52352 -13.38782 -13.18729 -13.02619 -12.98929 -12.88832 -12.60021 -12.49989 -12.40669 -12.21556 -12.00650 -11.86158 -11.84913 -11.55222 -11.40490 -11.22911 -11.08181 -10.54866 -10.33632 -9.74415 -9.61300 -9.13491 -8.69540 -7.86778 -5.32417 -0.08349 0.37993 1.26257 1.49372 1.50495 1.57441 1.60706 1.86553 2.17697 2.53234 2.75985 3.20167 3.30468 3.50173 3.68081 3.71803 3.84136 3.92482 3.97268 4.07171 4.09053 4.15503 4.23550 4.36175 4.37054 4.48029 4.48819 4.55445 4.65427 4.66883 4.82345 4.85253 4.87894 4.90650 4.96077 5.05095 5.08538 5.17742 5.23746 5.31198 5.33785 5.43006 5.47407 5.48961 5.50674 5.61465 5.65916 5.71726 5.75190 6.06034 6.18789 6.40071 7.15577 7.15912 7.62365 7.85095 8.38356 9.20442 Molecular weight = 357.18amu Principal moments of inertia in cm(-1) A = 0.036103 B = 0.001359 C = 0.001351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.379694 B =20603.278943 C =20725.588903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.049 4.049 3 Si 0.969 3.031 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.268 1.268 7 C -0.265 4.265 8 H 0.068 0.932 9 N -0.608 5.608 10 C 0.178 3.822 11 C -0.127 4.127 12 C 0.181 3.819 13 N -0.724 5.724 14 C 0.699 3.301 15 O -0.639 6.639 16 N -0.729 5.729 17 C 0.147 3.853 18 C -0.041 4.041 19 C 0.027 3.973 20 C -0.205 4.205 21 C -0.155 4.155 22 C -0.084 4.084 23 C -0.137 4.137 24 C -0.092 4.092 25 C -0.124 4.124 26 C 0.021 3.979 27 O -0.211 6.211 28 C -0.123 4.123 29 C 0.144 3.856 30 H 0.251 0.749 31 H -0.007 1.007 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.053 0.947 36 H 0.412 0.588 37 H 0.417 0.583 38 H 0.060 0.940 39 H 0.047 0.953 40 H 0.108 0.892 41 H 0.136 0.864 42 H 0.179 0.821 43 H 0.145 0.855 44 H 0.157 0.843 45 H 0.164 0.836 46 H 0.143 0.857 47 H 0.068 0.932 48 H 0.057 0.943 49 H 0.005 0.995 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.745 -30.644 16.888 35.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.244 4.244 3 Si 0.797 3.203 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.193 1.193 7 C -0.395 4.395 8 H 0.085 0.915 9 N -0.332 5.332 10 C 0.052 3.948 11 C -0.167 4.167 12 C 0.075 3.925 13 N -0.379 5.379 14 C 0.399 3.601 15 O -0.521 6.521 16 N -0.387 5.387 17 C 0.022 3.978 18 C -0.078 4.078 19 C -0.020 4.020 20 C -0.224 4.224 21 C -0.156 4.156 22 C -0.102 4.102 23 C -0.155 4.155 24 C -0.110 4.110 25 C -0.142 4.142 26 C -0.026 4.026 27 O -0.114 6.114 28 C -0.163 4.163 29 C 0.017 3.983 30 H 0.060 0.940 31 H 0.011 0.989 32 H 0.082 0.918 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.071 0.929 36 H 0.248 0.752 37 H 0.254 0.746 38 H 0.079 0.921 39 H 0.065 0.935 40 H 0.126 0.874 41 H 0.154 0.846 42 H 0.197 0.803 43 H 0.162 0.838 44 H 0.175 0.825 45 H 0.182 0.818 46 H 0.161 0.839 47 H 0.087 0.913 48 H 0.075 0.925 49 H 0.023 0.977 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.070 -30.754 16.003 34.804 hybrid contribution 0.242 1.331 0.126 1.359 sum 3.312 -29.423 16.129 33.717 Atomic orbital electron populations 1.70189 1.06735 1.25946 1.55312 1.25816 0.96013 1.01523 1.01057 0.85259 0.78154 0.79414 0.77484 1.21426 1.21766 1.19286 1.19530 0.92913 0.85847 1.41221 0.91456 1.44341 1.35935 1.02153 1.50734 1.20567 0.87666 0.97771 0.88793 1.22253 1.02029 0.93499 0.98880 1.20482 0.96882 0.87763 0.87370 1.45091 1.72547 1.04167 1.16087 1.16144 0.78221 0.81676 0.84080 1.90915 1.55511 1.78838 1.26787 1.44765 1.73549 1.06059 1.14290 1.21020 1.00851 0.78505 0.97416 1.20398 1.06410 0.83407 0.97633 1.22366 0.82805 0.95540 1.01312 1.22627 1.01702 0.90315 1.07752 1.20340 0.93897 0.95994 1.05384 1.20664 1.01314 0.90038 0.98173 1.21219 0.93409 1.00203 1.00648 1.21377 0.97000 0.95824 0.96782 1.20341 0.99482 0.89808 1.04577 1.20107 0.96646 0.83158 1.02709 1.83923 1.35664 1.19230 1.72572 1.22174 0.97955 0.98436 0.97740 1.20973 0.97303 0.86039 0.93948 0.94031 0.98932 0.91780 0.90513 0.90870 0.92918 0.75181 0.74598 0.92118 0.93495 0.87387 0.84648 0.80321 0.83751 0.82505 0.81808 0.83931 0.91337 0.92455 0.97730 0.92388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.28 11.19 21.65 0.24 -55.04 16 2 C -0.05 -2.71 4.92 84.86 0.42 -2.29 16 3 Si 0.97 44.38 29.59 68.60 2.03 46.41 16 4 H -0.29 -13.09 7.11 99.48 0.71 -12.39 16 5 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 6 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 7 C -0.27 -14.59 9.58 84.03 0.81 -13.78 16 8 H 0.07 3.60 7.88 -2.91 -0.02 3.58 16 9 N -0.61 -30.87 2.99 -699.09 -2.09 -32.96 16 10 C 0.18 8.54 5.30 86.36 0.46 9.00 16 11 C -0.13 -4.47 5.55 30.67 0.17 -4.30 16 12 C 0.18 6.18 2.42 45.01 0.11 6.29 16 13 N -0.72 -18.54 5.08 -457.70 -2.33 -20.87 16 14 C 0.70 19.66 8.53 179.05 1.53 21.18 16 15 O -0.64 -24.99 16.01 -3.99 -0.06 -25.05 16 16 N -0.73 -12.77 5.56 -478.53 -2.66 -15.43 16 17 C 0.15 2.58 5.66 86.38 0.49 3.07 16 18 C -0.04 -0.43 5.83 29.85 0.17 -0.25 16 19 C 0.03 0.46 6.49 24.72 0.16 0.62 16 20 C -0.21 -3.36 11.01 23.54 0.26 -3.10 16 21 C -0.16 -2.93 6.40 -20.22 -0.13 -3.06 16 22 C -0.08 -1.19 10.05 22.20 0.22 -0.97 16 23 C -0.14 -1.50 9.98 22.04 0.22 -1.28 16 24 C -0.09 -1.02 10.01 22.30 0.22 -0.80 16 25 C -0.12 -1.94 10.07 22.35 0.23 -1.72 16 26 C 0.02 0.43 7.42 22.99 0.17 0.60 16 27 O -0.21 -4.57 10.58 -8.93 -0.09 -4.67 16 28 C -0.12 -4.43 5.65 30.67 0.17 -4.26 16 29 C 0.14 6.32 6.52 86.36 0.56 6.88 16 30 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 31 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 32 H 0.06 3.42 6.07 -2.39 -0.01 3.40 16 33 H 0.08 2.37 8.14 -2.38 -0.02 2.35 16 34 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 35 H 0.05 2.15 7.58 -2.39 -0.02 2.13 16 36 H 0.41 7.35 8.62 -92.71 -0.80 6.55 16 37 H 0.42 3.81 8.49 -92.72 -0.79 3.03 16 38 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.14 0.61 8.14 -2.39 -0.02 0.59 16 42 H 0.18 1.98 8.06 -2.91 -0.02 1.95 16 43 H 0.14 1.40 8.06 -2.91 -0.02 1.38 16 44 H 0.16 0.75 8.06 -2.91 -0.02 0.73 16 45 H 0.16 0.74 8.06 -2.91 -0.02 0.72 16 46 H 0.14 1.74 8.06 -2.91 -0.02 1.72 16 47 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 48 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 49 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 50 H 0.06 2.48 7.93 -2.39 -0.02 2.46 16 Total: -1.00 -78.62 410.27 0.65 -77.97 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: -0.62 Total: 17.80 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: 6.24 Total: 11.85 kcal Atomic # 7 Polarization: -117.47 SS G_CDS: -6.84 Total: -124.30 kcal Atomic # 8 Polarization: -29.56 SS G_CDS: -0.16 Total: -29.72 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -78.62 0.65 -77.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095399897.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.306 kcal (2) G-P(sol) polarization free energy of solvation -78.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds