Wall clock time and date at job start Tue Mar 31 2020 05:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34799 * 125.91116 * 2 1 4 4 C 1.41170 * 107.50880 * 179.97438 * 3 2 1 5 5 C 1.50701 * 126.24564 * 180.02562 * 4 3 2 6 6 H 1.08994 * 110.08639 * 147.06111 * 5 4 3 7 7 N 1.48239 * 110.11040 * 25.47101 * 5 4 3 8 8 C 1.47425 * 102.98824 * 214.53935 * 7 5 4 9 9 C 1.53533 * 110.66442 * 145.77018 * 8 7 5 10 10 C 1.55061 * 104.00926 * 98.02130 * 9 8 7 11 11 C 1.54951 * 102.84809 * 37.30527 * 10 9 8 12 12 C 1.53149 * 110.88874 * 264.81490 * 8 7 5 13 13 C 1.50525 * 105.69001 * 25.48991 * 8 7 5 14 14 O 1.21283 * 125.89727 * 164.01741 * 13 8 7 15 15 N 1.35090 * 108.21138 * 344.27637 * 13 8 7 16 16 C 1.46498 * 125.22215 * 178.82027 * 15 13 8 17 17 C 1.53001 * 109.47319 * 85.86820 * 16 15 13 18 18 C 1.53006 * 117.50038 * 243.75209 * 17 16 15 19 19 C 1.52996 * 117.50074 * 175.09135 * 17 16 15 20 20 C 1.34801 * 107.50834 * 0.26833 * 4 3 2 21 21 C 1.50699 * 125.90919 * 179.71571 * 20 4 3 22 22 N 1.36849 * 125.90231 * 179.97438 * 2 1 3 23 23 C 1.37501 * 125.69553 * 0.02562 * 22 2 1 24 24 H 1.07996 * 119.99433 * 40.16420 * 23 22 2 25 25 C 1.38920 * 119.99744 * 220.16395 * 23 22 2 26 26 N 1.31359 * 120.00424 * 19.59729 * 25 23 22 27 27 Si 1.86805 * 119.99630 * 199.59548 * 25 23 22 28 28 H 1.48496 * 109.46979 * 90.00225 * 27 25 23 29 29 H 1.48494 * 109.47033 * 210.00029 * 27 25 23 30 30 H 1.48503 * 109.46837 * 329.99788 * 27 25 23 31 31 H 1.08999 * 109.47212 * 94.78993 * 1 2 3 32 32 H 1.08996 * 109.47408 * 214.79307 * 1 2 3 33 33 H 1.09000 * 109.46675 * 334.79131 * 1 2 3 34 34 H 1.08002 * 126.24651 * 0.02562 * 3 2 1 35 35 H 1.00911 * 110.99717 * 95.68987 * 7 5 4 36 36 H 1.08994 * 110.51812 * 216.65184 * 9 8 7 37 37 H 1.09005 * 110.51849 * 339.39284 * 9 8 7 38 38 H 1.09010 * 110.73976 * 278.96463 * 10 9 8 39 39 H 1.09003 * 110.73695 * 155.64597 * 10 9 8 40 40 H 1.09000 * 110.48733 * 203.78159 * 11 10 9 41 41 H 1.08999 * 110.48521 * 81.14363 * 11 10 9 42 42 H 1.09003 * 110.08849 * 357.99048 * 12 8 7 43 43 H 1.08999 * 110.08722 * 119.51182 * 12 8 7 44 44 H 1.08992 * 109.47663 * 205.86914 * 16 15 13 45 45 H 1.09000 * 109.47108 * 325.87085 * 16 15 13 46 46 H 1.09002 * 115.54820 * 29.41401 * 17 16 15 47 47 H 1.09000 * 117.49585 * 359.97438 * 18 17 16 48 48 H 1.08997 * 117.49825 * 145.01365 * 18 17 16 49 49 H 1.09007 * 117.49751 * 214.97956 * 19 17 16 50 50 H 1.08992 * 117.50115 * 359.97438 * 19 17 16 51 51 H 1.08994 * 109.47365 * 90.00107 * 21 20 4 52 52 H 1.09004 * 109.47104 * 210.00087 * 21 20 4 53 53 H 1.09003 * 109.47224 * 329.99623 * 21 20 4 54 54 H 0.96996 * 119.99798 * 184.72790 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2976 1.0918 0.0000 4 6 3.6371 0.6461 0.0006 5 6 4.8663 1.5181 0.0014 6 1 5.6684 1.0339 0.5583 7 7 4.5546 2.8379 0.6001 8 6 5.4015 3.7620 -0.1758 9 6 4.7005 5.1158 -0.3580 10 6 5.3146 6.0087 0.7510 11 6 6.7949 5.5516 0.7812 12 6 6.7257 4.0263 0.5468 13 6 5.6290 3.0888 -1.5028 14 8 6.0386 3.6244 -2.5109 15 7 5.2929 1.7863 -1.3785 16 6 5.3479 0.7932 -2.4541 17 6 6.7579 0.2047 -2.5333 18 6 7.5567 0.4540 -3.8143 19 6 6.9918 -0.9385 -3.5229 20 6 3.6161 -0.7017 -0.0051 21 6 4.8228 -1.6045 -0.0127 22 7 2.3095 -1.1085 0.0005 23 6 1.8754 -2.4132 0.0006 24 1 1.0270 -2.6999 -0.6029 25 6 2.5283 -3.3623 0.7770 26 7 3.2848 -2.9819 1.7812 27 14 2.3303 -5.1797 0.3928 28 1 3.3840 -5.6007 -0.5651 29 1 2.4569 -5.9671 1.6454 30 1 0.9926 -5.4159 -0.2073 31 1 -0.3633 -0.0858 -1.0241 32 1 -0.3634 -0.8439 0.5864 33 1 -0.3633 0.9298 0.4377 34 1 1.9667 2.1199 0.0004 35 1 4.7997 2.8579 1.5787 36 1 4.9162 5.5281 -1.3436 37 1 3.6252 5.0118 -0.2130 38 1 4.8325 5.8194 1.7102 39 1 5.2415 7.0627 0.4825 40 1 7.2414 5.7685 1.7515 41 1 7.3596 6.0346 -0.0162 42 1 6.7430 3.4998 1.5011 43 1 7.5617 3.7037 -0.0737 44 1 4.6327 -0.0035 -2.2500 45 1 5.0996 1.2703 -3.4022 46 1 7.3095 0.1777 -1.5935 47 1 7.0774 1.0370 -4.6007 48 1 8.6337 0.5907 -3.7172 49 1 7.6975 -1.7175 -3.2343 50 1 6.1411 -1.2716 -4.1172 51 1 5.1169 -1.8265 1.0131 52 1 4.5789 -2.5326 -0.5297 53 1 5.6452 -1.1074 -0.5270 54 1 3.7947 -3.6390 2.2804 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095408354.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:51 Heat of formation + Delta-G solvation = 31.297432 kcal Electronic energy + Delta-G solvation = -34375.695746 eV Core-core repulsion = 30313.124557 eV Total energy + Delta-G solvation = -4062.571189 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 357.216 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.39371 -41.41406 -38.81032 -38.14959 -37.20464 -35.31144 -33.48694 -33.15102 -31.89052 -29.76647 -29.66956 -29.13767 -28.35542 -26.68824 -25.50081 -23.76652 -23.27397 -22.76152 -21.75917 -21.23979 -20.86099 -20.34420 -19.85382 -18.14808 -18.01955 -17.28020 -16.97502 -16.68704 -16.29983 -16.09348 -15.95605 -15.58344 -15.34433 -15.07521 -14.97688 -14.83273 -14.43448 -14.34462 -14.18069 -13.83283 -13.66031 -13.51165 -13.34148 -13.08652 -13.02581 -12.82193 -12.80633 -12.78870 -12.60726 -12.41540 -12.38857 -12.23783 -12.15809 -12.06403 -11.96913 -11.89085 -11.73657 -11.45476 -11.42007 -11.05617 -10.79136 -10.66362 -10.17644 -9.37959 -9.22749 -8.49992 -8.10077 -6.34733 1.32974 1.39850 1.44894 1.49730 1.76238 2.02652 2.21351 2.49014 2.85968 2.97105 3.11716 3.27606 3.35163 3.61276 3.65258 3.75973 3.93916 4.02913 4.15993 4.22676 4.24766 4.32711 4.45734 4.51563 4.55387 4.62470 4.69735 4.71139 4.74484 4.77165 4.79313 4.80132 4.82197 4.85486 4.92603 4.96399 4.98530 5.03907 5.08457 5.13856 5.18274 5.20151 5.21052 5.22381 5.23245 5.30022 5.42229 5.47886 5.52222 5.64880 5.90177 5.94872 6.10468 6.26411 6.38996 6.71418 6.82043 7.10735 7.35900 7.84007 8.51306 Molecular weight = 357.22amu Principal moments of inertia in cm(-1) A = 0.010848 B = 0.003855 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2580.532068 B = 7261.537883 C = 8669.431324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C -0.075 4.075 3 C -0.182 4.182 4 C -0.226 4.226 5 C 0.384 3.616 6 H 0.054 0.946 7 N -0.632 5.632 8 C 0.065 3.935 9 C -0.097 4.097 10 C -0.112 4.112 11 C -0.114 4.114 12 C -0.129 4.129 13 C 0.518 3.482 14 O -0.561 6.561 15 N -0.602 5.602 16 C 0.167 3.833 17 C -0.179 4.179 18 C -0.168 4.168 19 C -0.161 4.161 20 C 0.028 3.972 21 C -0.043 4.043 22 N -0.265 5.265 23 C -0.386 4.386 24 H 0.091 0.909 25 C 0.030 3.970 26 N -0.853 5.853 27 Si 0.978 3.022 28 H -0.265 1.265 29 H -0.276 1.276 30 H -0.262 1.262 31 H 0.055 0.945 32 H 0.045 0.955 33 H 0.078 0.922 34 H 0.120 0.880 35 H 0.363 0.637 36 H 0.061 0.939 37 H 0.075 0.925 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.090 0.910 41 H 0.065 0.935 42 H 0.089 0.911 43 H 0.057 0.943 44 H 0.079 0.921 45 H 0.063 0.937 46 H 0.100 0.900 47 H 0.088 0.912 48 H 0.103 0.897 49 H 0.109 0.891 50 H 0.096 0.904 51 H 0.056 0.944 52 H 0.035 0.965 53 H 0.063 0.937 54 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.680 8.750 -1.169 11.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.189 4.189 3 C -0.207 4.207 4 C -0.234 4.234 5 C 0.191 3.809 6 H 0.072 0.928 7 N -0.265 5.265 8 C -0.030 4.030 9 C -0.136 4.136 10 C -0.150 4.150 11 C -0.152 4.152 12 C -0.169 4.169 13 C 0.306 3.694 14 O -0.440 6.440 15 N -0.334 5.334 16 C 0.045 3.955 17 C -0.198 4.198 18 C -0.205 4.205 19 C -0.199 4.199 20 C -0.092 4.092 21 C -0.100 4.100 22 N 0.074 4.926 23 C -0.513 4.513 24 H 0.109 0.891 25 C -0.179 4.179 26 N -0.484 5.484 27 Si 0.800 3.200 28 H -0.190 1.190 29 H -0.201 1.201 30 H -0.186 1.186 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.097 0.903 34 H 0.138 0.862 35 H 0.183 0.817 36 H 0.079 0.921 37 H 0.094 0.906 38 H 0.099 0.901 39 H 0.101 0.899 40 H 0.109 0.891 41 H 0.083 0.917 42 H 0.107 0.893 43 H 0.076 0.924 44 H 0.097 0.903 45 H 0.081 0.919 46 H 0.119 0.881 47 H 0.106 0.894 48 H 0.121 0.879 49 H 0.128 0.872 50 H 0.114 0.886 51 H 0.075 0.925 52 H 0.054 0.946 53 H 0.081 0.919 54 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 7.142 8.642 -1.845 11.363 hybrid contribution 0.529 -1.445 0.216 1.554 sum 7.671 7.198 -1.629 10.645 Atomic orbital electron populations 1.19936 0.88707 1.01743 1.00797 1.20850 0.94333 0.87130 1.16552 1.20050 0.92047 0.95898 1.12726 1.18554 0.93709 0.90930 1.20171 1.19871 0.91802 0.89280 0.79990 0.92844 1.63646 1.52889 1.02354 1.07621 1.22059 0.94451 0.95270 0.91234 1.22170 1.00271 0.91290 0.99875 1.22513 0.94838 0.99326 0.98307 1.22354 0.97329 0.92735 1.02737 1.22620 0.94575 0.99692 1.00003 1.21138 0.75638 0.82472 0.90127 1.90627 1.48430 1.70005 1.34930 1.48876 1.63648 1.09214 1.11645 1.20764 0.95671 0.90594 0.88483 1.22601 0.97009 1.04783 0.95435 1.23029 1.00067 0.99281 0.98114 1.23012 1.03501 0.91684 1.01678 1.20102 0.85930 0.92961 1.10212 1.20002 0.92808 0.96485 1.00746 1.40152 1.04065 1.04205 1.44160 1.19804 1.19355 0.83422 1.28731 0.89095 1.26144 0.95397 1.04252 0.92070 1.70119 1.26101 1.37626 1.14580 0.85171 0.79644 0.76910 0.78247 1.19018 1.20077 1.18647 0.92646 0.93646 0.90306 0.86225 0.81726 0.92066 0.90615 0.90099 0.89927 0.89137 0.91667 0.89266 0.92431 0.90304 0.91904 0.88146 0.89356 0.87886 0.87224 0.88592 0.92500 0.94624 0.91855 0.91077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -2.14 10.03 71.24 0.71 -1.42 16 2 C -0.07 -3.51 6.86 40.99 0.28 -3.22 16 3 C -0.18 -8.08 10.24 22.20 0.23 -7.85 16 4 C -0.23 -9.58 4.71 -19.93 -0.09 -9.68 16 5 C 0.38 13.40 3.72 128.00 0.48 13.87 16 6 H 0.05 1.85 7.99 -2.39 -0.02 1.83 16 7 N -0.63 -18.83 6.52 -460.52 -3.00 -21.84 16 8 C 0.06 1.80 0.99 2.85 0.00 1.80 16 9 C -0.10 -2.48 6.11 31.48 0.19 -2.29 16 10 C -0.11 -2.03 6.91 31.97 0.22 -1.80 16 11 C -0.11 -2.00 6.85 31.76 0.22 -1.78 16 12 C -0.13 -2.87 6.19 31.14 0.19 -2.67 16 13 C 0.52 18.16 6.73 87.55 0.59 18.75 16 14 O -0.56 -22.49 17.28 -3.04 -0.05 -22.54 16 15 N -0.60 -21.02 2.82 -809.28 -2.28 -23.30 16 16 C 0.17 5.73 5.57 86.38 0.48 6.21 16 17 C -0.18 -5.18 5.04 -10.79 -0.05 -5.23 16 18 C -0.17 -4.23 10.18 30.62 0.31 -3.92 16 19 C -0.16 -3.94 10.25 30.62 0.31 -3.63 16 20 C 0.03 1.31 5.36 40.99 0.22 1.53 16 21 C -0.04 -1.84 7.91 71.24 0.56 -1.28 16 22 N -0.26 -13.37 2.77 -323.65 -0.90 -14.26 16 23 C -0.39 -19.75 9.16 83.97 0.77 -18.98 16 24 H 0.09 4.60 7.90 -2.91 -0.02 4.58 16 25 C 0.03 1.47 4.02 84.93 0.34 1.81 16 26 N -0.85 -42.96 10.72 21.65 0.23 -42.73 16 27 Si 0.98 37.90 29.60 68.60 2.03 39.93 16 28 H -0.27 -9.97 7.11 99.48 0.71 -9.26 16 29 H -0.28 -10.44 7.11 99.48 0.71 -9.73 16 30 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 31 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.04 1.84 7.95 -2.39 -0.02 1.82 16 33 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 34 H 0.12 5.02 8.06 -2.91 -0.02 5.00 16 35 H 0.36 9.28 7.99 -89.69 -0.72 8.56 16 36 H 0.06 1.73 7.51 -2.39 -0.02 1.72 16 37 H 0.08 2.03 8.04 -2.38 -0.02 2.02 16 38 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 39 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.09 1.69 7.38 -2.39 -0.02 1.68 16 43 H 0.06 1.42 7.71 -2.39 -0.02 1.40 16 44 H 0.08 3.02 5.85 -2.39 -0.01 3.01 16 45 H 0.06 2.23 7.85 -2.39 -0.02 2.21 16 46 H 0.10 2.94 8.09 -2.39 -0.02 2.92 16 47 H 0.09 2.33 8.03 -2.39 -0.02 2.31 16 48 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 49 H 0.11 2.33 8.14 -2.38 -0.02 2.32 16 50 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 51 H 0.06 2.55 6.99 -2.39 -0.02 2.53 16 52 H 0.03 1.59 7.11 -2.38 -0.02 1.57 16 53 H 0.06 2.34 6.01 -2.39 -0.01 2.32 16 54 H 0.28 13.07 8.31 -92.71 -0.77 12.30 16 Total: -1.00 -60.70 419.91 2.18 -58.52 By element: Atomic # 1 Polarization: 45.83 SS G_CDS: 0.18 Total: 46.01 kcal Atomic # 6 Polarization: -25.75 SS G_CDS: 5.97 Total: -19.79 kcal Atomic # 7 Polarization: -96.18 SS G_CDS: -5.95 Total: -102.12 kcal Atomic # 8 Polarization: -22.49 SS G_CDS: -0.05 Total: -22.54 kcal Atomic # 14 Polarization: 37.90 SS G_CDS: 2.03 Total: 39.93 kcal Total: -60.70 2.18 -58.52 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095408354.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.814 kcal (2) G-P(sol) polarization free energy of solvation -60.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds