Wall clock time and date at job start Tue Mar 31 2020 05:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34812 * 125.90876 * 2 1 4 4 C 1.41170 * 107.50753 * 180.12966 * 3 2 1 5 5 C 1.50700 * 126.24544 * 179.82742 * 4 3 2 6 6 H 1.08995 * 110.08842 * 147.46106 * 5 4 3 7 7 N 1.48248 * 110.10910 * 269.11003 * 5 4 3 8 8 C 1.47420 * 102.98441 * 145.39388 * 7 5 4 9 9 C 1.53533 * 110.68153 * 214.26223 * 8 7 5 10 10 C 1.55055 * 104.01209 * 215.66607 * 9 8 7 11 11 C 1.54962 * 102.84042 * 37.30667 * 10 9 8 12 12 C 1.53135 * 110.91817 * 95.18674 * 8 7 5 13 13 C 1.50534 * 105.63272 * 334.31287 * 8 7 5 14 14 O 1.21278 * 125.88696 * 196.23118 * 13 8 7 15 15 N 1.35078 * 108.21619 * 16.34845 * 13 8 7 16 16 C 1.46502 * 125.21951 * 180.77327 * 15 13 8 17 17 C 1.52992 * 109.47169 * 272.77156 * 16 15 13 18 18 C 1.53005 * 117.50000 * 243.74648 * 17 16 15 19 19 C 1.53003 * 117.50085 * 175.08793 * 17 16 15 20 20 C 1.34803 * 107.50692 * 359.57220 * 4 3 2 21 21 C 1.50702 * 125.90535 * 180.26077 * 20 4 3 22 22 N 1.36848 * 125.90638 * 179.64886 * 2 1 3 23 23 C 1.37492 * 125.69419 * 0.02562 * 22 2 1 24 24 H 1.08002 * 119.99983 * 38.50000 * 23 22 2 25 25 C 1.38923 * 119.99669 * 218.49715 * 23 22 2 26 26 N 1.31360 * 120.00290 * 21.44719 * 25 23 22 27 27 Si 1.86802 * 119.99688 * 201.44123 * 25 23 22 28 28 H 1.48503 * 109.47038 * 60.00828 * 27 25 23 29 29 H 1.48505 * 109.46819 * 180.02562 * 27 25 23 30 30 H 1.48496 * 109.47549 * 300.00135 * 27 25 23 31 31 H 1.08998 * 109.46986 * 267.96795 * 1 2 3 32 32 H 1.09004 * 109.47028 * 27.97278 * 1 2 3 33 33 H 1.08997 * 109.46871 * 147.96572 * 1 2 3 34 34 H 1.08001 * 126.24259 * 359.96790 * 3 2 1 35 35 H 1.00901 * 110.99632 * 26.54637 * 7 5 4 36 36 H 1.09012 * 110.52134 * 334.29927 * 9 8 7 37 37 H 1.08998 * 110.52285 * 97.02998 * 9 8 7 38 38 H 1.09003 * 110.74008 * 278.97334 * 10 9 8 39 39 H 1.08995 * 110.74231 * 155.64125 * 10 9 8 40 40 H 1.09001 * 110.48293 * 203.78327 * 11 10 9 41 41 H 1.09008 * 110.48008 * 81.15590 * 11 10 9 42 42 H 1.08992 * 110.08743 * 240.05333 * 12 8 7 43 43 H 1.09003 * 110.08584 * 1.63811 * 12 8 7 44 44 H 1.09002 * 109.47150 * 32.77331 * 16 15 13 45 45 H 1.09006 * 109.47496 * 152.76823 * 16 15 13 46 46 H 1.09001 * 115.55061 * 29.41582 * 17 16 15 47 47 H 1.08998 * 117.49665 * 359.97438 * 18 17 16 48 48 H 1.08998 * 117.49777 * 145.01906 * 18 17 16 49 49 H 1.09002 * 117.49741 * 214.98048 * 19 17 16 50 50 H 1.09004 * 117.49719 * 359.97438 * 19 17 16 51 51 H 1.08993 * 109.47560 * 89.99960 * 21 20 4 52 52 H 1.09007 * 109.47226 * 209.99879 * 21 20 4 53 53 H 1.09010 * 109.47111 * 329.99512 * 21 20 4 54 54 H 0.96994 * 120.00013 * 182.91253 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2977 1.0919 0.0000 4 6 3.6372 0.6463 -0.0030 5 6 4.8663 1.5183 -0.0078 6 1 5.6725 1.0319 0.5413 7 7 5.2906 1.7934 -1.4014 8 6 5.8164 3.1684 -1.3221 9 6 5.5250 3.9359 -2.6195 10 6 6.7714 4.8384 -2.8098 11 6 7.9307 3.9311 -2.3258 12 6 7.3351 3.1625 -1.1256 13 6 5.1130 3.8049 -0.1534 14 8 5.0535 4.9938 0.0790 15 7 4.5618 2.8235 0.5933 16 6 3.7754 3.0295 1.8121 17 6 4.7132 3.0947 3.0191 18 6 4.5769 2.0003 4.0796 19 6 4.0927 3.4212 4.3790 20 6 3.6162 -0.7016 0.0048 21 6 4.8229 -1.6042 0.0105 22 7 2.3096 -1.1084 0.0068 23 6 1.8756 -2.4130 0.0143 24 1 1.0108 -2.6978 -0.5666 25 6 2.5496 -3.3649 0.7691 26 7 3.3049 -2.9900 1.7763 27 14 2.3816 -5.1779 0.3516 28 1 2.8614 -5.4133 -1.0339 29 1 3.1936 -5.9815 1.3004 30 1 0.9561 -5.5802 0.4570 31 1 -0.3633 -0.0364 1.0270 32 1 -0.3633 0.9076 -0.4820 33 1 -0.3633 -0.8712 -0.5451 34 1 1.9667 2.1199 -0.0005 35 1 4.5069 1.7418 -2.0348 36 1 5.4216 3.2456 -3.4569 37 1 4.6265 4.5433 -2.5106 38 1 6.6980 5.7334 -2.1919 39 1 6.9004 5.1022 -3.8595 40 1 8.7806 4.5352 -2.0081 41 1 8.2271 3.2383 -3.1134 42 1 7.5939 3.6649 -0.1936 43 1 7.7073 2.1380 -1.1152 44 1 3.2200 3.9641 1.7325 45 1 3.0774 2.2018 1.9385 46 1 5.7134 3.4781 2.8172 47 1 3.8188 1.2341 3.9175 48 1 5.4873 1.6639 4.5756 49 1 4.6848 4.0191 5.0719 50 1 3.0164 3.5900 4.4137 51 1 5.1135 -1.8159 1.0394 52 1 4.5809 -2.5376 -0.4980 53 1 5.6472 -1.1122 -0.5060 54 1 3.8087 -3.6506 2.2768 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095408355.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:55 Heat of formation + Delta-G solvation = 29.799317 kcal Electronic energy + Delta-G solvation = -34324.014521 eV Core-core repulsion = 30261.378369 eV Total energy + Delta-G solvation = -4062.636152 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 357.216 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.48908 -41.47229 -38.74918 -38.09208 -37.28894 -35.34546 -33.60547 -33.08434 -31.96489 -29.81686 -29.64536 -29.02002 -28.31728 -26.69485 -25.42767 -23.93502 -23.27956 -22.87542 -21.58713 -21.54244 -20.68581 -20.64274 -19.62943 -18.36726 -17.78075 -17.51340 -17.00158 -16.60683 -16.46053 -16.19986 -15.92462 -15.55484 -15.42133 -15.09120 -14.91362 -14.66598 -14.43953 -14.28573 -14.05796 -13.86379 -13.69492 -13.56970 -13.40582 -13.10105 -12.82976 -12.80315 -12.77715 -12.71892 -12.58744 -12.45980 -12.41964 -12.30465 -12.15998 -12.07192 -12.00163 -11.97029 -11.87491 -11.52934 -11.41408 -11.03173 -10.93334 -10.75388 -9.93065 -9.73865 -9.28494 -8.53191 -8.17232 -6.34547 1.33876 1.41420 1.43356 1.49814 1.85125 1.97198 2.19578 2.21986 2.85319 2.94281 3.19562 3.26127 3.29357 3.61303 3.65303 3.77290 3.93075 4.03523 4.17187 4.25135 4.35280 4.39891 4.47300 4.50467 4.52648 4.62806 4.68302 4.71048 4.72236 4.73925 4.75993 4.77719 4.86991 4.87912 4.88686 4.95607 4.96837 5.03423 5.06314 5.10742 5.13681 5.15424 5.19712 5.20751 5.25573 5.29074 5.37205 5.45464 5.51412 5.55352 5.75316 5.90320 6.08952 6.20806 6.27718 6.67295 6.71913 7.08046 7.30942 7.78051 8.48784 Molecular weight = 357.22amu Principal moments of inertia in cm(-1) A = 0.010402 B = 0.003749 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2691.101739 B = 7466.621313 C = 8484.657158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C -0.061 4.061 3 C -0.206 4.206 4 C -0.241 4.241 5 C 0.382 3.618 6 H 0.082 0.918 7 N -0.625 5.625 8 C 0.064 3.936 9 C -0.110 4.110 10 C -0.116 4.116 11 C -0.111 4.111 12 C -0.094 4.094 13 C 0.497 3.503 14 O -0.560 6.560 15 N -0.615 5.615 16 C 0.166 3.834 17 C -0.175 4.175 18 C -0.174 4.174 19 C -0.157 4.157 20 C 0.038 3.962 21 C -0.045 4.045 22 N -0.261 5.261 23 C -0.391 4.391 24 H 0.095 0.905 25 C 0.031 3.969 26 N -0.849 5.849 27 Si 0.979 3.021 28 H -0.264 1.264 29 H -0.274 1.274 30 H -0.265 1.265 31 H 0.052 0.948 32 H 0.079 0.921 33 H 0.051 0.949 34 H 0.111 0.889 35 H 0.349 0.651 36 H 0.096 0.904 37 H 0.055 0.945 38 H 0.057 0.943 39 H 0.091 0.909 40 H 0.078 0.922 41 H 0.084 0.916 42 H 0.051 0.949 43 H 0.087 0.913 44 H 0.069 0.931 45 H 0.083 0.917 46 H 0.092 0.908 47 H 0.079 0.921 48 H 0.100 0.900 49 H 0.112 0.888 50 H 0.100 0.900 51 H 0.058 0.942 52 H 0.035 0.965 53 H 0.067 0.933 54 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.069 8.128 -3.468 10.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.176 4.176 3 C -0.231 4.231 4 C -0.249 4.249 5 C 0.190 3.810 6 H 0.100 0.900 7 N -0.256 5.256 8 C -0.031 4.031 9 C -0.149 4.149 10 C -0.153 4.153 11 C -0.149 4.149 12 C -0.133 4.133 13 C 0.284 3.716 14 O -0.439 6.439 15 N -0.349 5.349 16 C 0.043 3.957 17 C -0.195 4.195 18 C -0.211 4.211 19 C -0.194 4.194 20 C -0.082 4.082 21 C -0.102 4.102 22 N 0.079 4.921 23 C -0.518 4.518 24 H 0.113 0.887 25 C -0.178 4.178 26 N -0.479 5.479 27 Si 0.801 3.199 28 H -0.189 1.189 29 H -0.199 1.199 30 H -0.189 1.189 31 H 0.070 0.930 32 H 0.097 0.903 33 H 0.070 0.930 34 H 0.129 0.871 35 H 0.167 0.833 36 H 0.115 0.885 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.110 0.890 40 H 0.097 0.903 41 H 0.103 0.897 42 H 0.070 0.930 43 H 0.106 0.894 44 H 0.088 0.912 45 H 0.102 0.898 46 H 0.111 0.889 47 H 0.097 0.903 48 H 0.119 0.881 49 H 0.130 0.870 50 H 0.118 0.882 51 H 0.076 0.924 52 H 0.054 0.946 53 H 0.086 0.914 54 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.587 7.903 -3.074 10.738 hybrid contribution -1.303 -0.546 0.550 1.516 sum 5.284 7.358 -2.523 9.403 Atomic orbital electron populations 1.19957 0.88555 1.01790 1.00986 1.20758 0.94267 0.86892 1.15692 1.19944 0.92081 0.95600 1.15521 1.18725 0.93292 0.91766 1.21078 1.20224 0.92692 0.81239 0.86858 0.90013 1.64232 1.34917 1.20964 1.05438 1.22150 0.97558 0.88809 0.94548 1.22413 0.99476 0.98369 0.94618 1.22464 0.93283 0.97399 1.02197 1.22366 0.97670 0.98054 0.96793 1.21913 0.89775 1.02317 0.99274 1.21626 0.78610 0.85690 0.85723 1.90626 1.62388 1.15658 1.75211 1.49023 1.51874 1.08375 1.25596 1.20877 0.92062 1.01662 0.81056 1.22586 1.00496 1.05592 0.90802 1.22981 1.03333 0.92157 1.02665 1.23025 1.01634 0.97977 0.96759 1.20066 0.85911 0.92918 1.09307 1.20006 0.92909 0.96474 1.00843 1.40182 1.04054 1.04310 1.43530 1.19779 1.17951 0.83166 1.30933 0.88690 1.26132 0.95161 1.04309 0.92232 1.70120 1.25992 1.37698 1.14139 0.85223 0.79133 0.76694 0.78827 1.18914 1.19863 1.18921 0.92955 0.90268 0.93045 0.87051 0.83298 0.88530 0.92637 0.92397 0.89029 0.90332 0.89710 0.93021 0.89445 0.91243 0.89831 0.88936 0.90250 0.88123 0.87000 0.88162 0.92379 0.94557 0.91435 0.90985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.08 10.06 71.24 0.72 -1.36 16 2 C -0.06 -2.76 6.86 40.99 0.28 -2.48 16 3 C -0.21 -8.67 8.44 22.20 0.19 -8.48 16 4 C -0.24 -9.95 4.68 -19.93 -0.09 -10.04 16 5 C 0.38 13.50 3.83 128.00 0.49 13.99 16 6 H 0.08 3.05 7.92 -2.39 -0.02 3.03 16 7 N -0.62 -19.15 7.06 -460.54 -3.25 -22.40 16 8 C 0.06 1.81 0.98 2.85 0.00 1.82 16 9 C -0.11 -2.67 5.75 31.48 0.18 -2.49 16 10 C -0.12 -2.34 6.92 31.97 0.22 -2.12 16 11 C -0.11 -2.11 6.85 31.76 0.22 -1.89 16 12 C -0.09 -2.33 6.28 31.14 0.20 -2.13 16 13 C 0.50 17.16 6.57 87.56 0.58 17.73 16 14 O -0.56 -22.13 17.64 -3.02 -0.05 -22.19 16 15 N -0.62 -21.25 2.62 -809.29 -2.12 -23.37 16 16 C 0.17 5.61 5.41 86.38 0.47 6.07 16 17 C -0.18 -5.31 6.01 -10.79 -0.06 -5.38 16 18 C -0.17 -5.06 10.18 30.62 0.31 -4.75 16 19 C -0.16 -3.91 10.25 30.62 0.31 -3.60 16 20 C 0.04 1.77 6.31 40.99 0.26 2.02 16 21 C -0.05 -1.94 8.17 71.24 0.58 -1.36 16 22 N -0.26 -12.82 2.79 -323.63 -0.90 -13.72 16 23 C -0.39 -19.62 9.23 83.97 0.77 -18.85 16 24 H 0.10 4.66 7.57 -2.91 -0.02 4.64 16 25 C 0.03 1.49 3.91 84.93 0.33 1.83 16 26 N -0.85 -42.31 10.65 21.65 0.23 -42.08 16 27 Si 0.98 37.44 29.60 68.60 2.03 39.47 16 28 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 29 H -0.27 -10.17 7.11 99.48 0.71 -9.46 16 30 H -0.26 -9.86 7.11 99.48 0.71 -9.16 16 31 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.08 2.51 8.14 -2.38 -0.02 2.49 16 33 H 0.05 1.92 7.61 -2.39 -0.02 1.90 16 34 H 0.11 4.44 7.63 -2.91 -0.02 4.41 16 35 H 0.35 10.99 7.90 -89.69 -0.71 10.28 16 36 H 0.10 2.05 7.96 -2.38 -0.02 2.03 16 37 H 0.05 1.50 7.80 -2.39 -0.02 1.48 16 38 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 42 H 0.05 1.38 7.72 -2.39 -0.02 1.36 16 43 H 0.09 2.13 7.94 -2.39 -0.02 2.12 16 44 H 0.07 2.35 8.09 -2.39 -0.02 2.33 16 45 H 0.08 3.12 5.64 -2.38 -0.01 3.11 16 46 H 0.09 2.92 8.14 -2.39 -0.02 2.91 16 47 H 0.08 2.67 8.03 -2.39 -0.02 2.65 16 48 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 49 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 50 H 0.10 2.38 8.14 -2.38 -0.02 2.36 16 51 H 0.06 2.63 6.96 -2.39 -0.02 2.61 16 52 H 0.04 1.62 7.02 -2.38 -0.02 1.60 16 53 H 0.07 2.54 7.83 -2.38 -0.02 2.52 16 54 H 0.28 13.06 8.31 -92.71 -0.77 12.29 16 Total: -1.00 -57.29 421.71 2.08 -55.21 By element: Atomic # 1 Polarization: 50.36 SS G_CDS: 0.19 Total: 50.55 kcal Atomic # 6 Polarization: -27.42 SS G_CDS: 5.95 Total: -21.47 kcal Atomic # 7 Polarization: -95.53 SS G_CDS: -6.04 Total: -101.57 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: -0.05 Total: -22.19 kcal Atomic # 14 Polarization: 37.44 SS G_CDS: 2.03 Total: 39.47 kcal Total: -57.29 2.08 -55.21 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095408355.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.012 kcal (2) G-P(sol) polarization free energy of solvation -57.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds