Wall clock time and date at job start Tue Mar 31 2020 05:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47330 * 2 1 4 4 C 1.53000 * 109.47157 * 120.00344 * 2 1 3 5 5 O 1.42905 * 109.47395 * 175.00012 * 4 2 1 6 6 C 1.42894 * 114.00207 * 179.97438 * 5 4 2 7 7 C 1.53005 * 109.47197 * 179.97438 * 6 5 4 8 8 H 1.08996 * 109.47268 * 184.99401 * 7 6 5 9 9 N 1.46499 * 109.47080 * 64.99860 * 7 6 5 10 10 C 1.34773 * 120.00312 * 154.99882 * 9 7 6 11 11 O 1.21587 * 119.99858 * 0.02562 * 10 9 7 12 12 C 1.47642 * 120.00350 * 179.97438 * 10 9 7 13 13 C 1.40014 * 119.89390 * 359.73123 * 12 10 9 14 14 C 1.36317 * 120.10413 * 179.75590 * 13 12 10 15 15 C 1.40886 * 119.89214 * 0.51515 * 14 13 12 16 16 C 1.41110 * 120.10302 * 179.72001 * 15 14 13 17 17 H 1.07999 * 120.00026 * 204.65285 * 16 15 14 18 18 C 1.40224 * 120.00219 * 24.65046 * 16 15 14 19 19 N 1.30648 * 119.99765 * 17.86424 * 18 16 15 20 20 Si 1.86797 * 120.00205 * 197.86692 * 18 16 15 21 21 H 1.48504 * 109.47032 * 89.99659 * 20 18 16 22 22 H 1.48500 * 109.47444 * 209.99768 * 20 18 16 23 23 H 1.48503 * 109.47284 * 330.00109 * 20 18 16 24 24 C 1.40888 * 119.79672 * 359.73729 * 15 14 13 25 25 C 1.36316 * 119.88711 * 0.02562 * 24 15 14 26 26 C 1.50702 * 109.46792 * 305.00030 * 7 6 5 27 27 C 1.34510 * 125.78434 * 259.99525 * 26 7 6 28 28 C 1.41390 * 106.83733 * 180.02562 * 27 26 7 29 29 C 1.34518 * 106.83864 * 0.02562 * 28 27 26 30 30 O 1.34297 * 108.42286 * 359.73726 * 29 28 27 31 31 H 1.09000 * 109.46688 * 299.99855 * 1 2 3 32 32 H 1.08995 * 109.47234 * 59.99786 * 1 2 3 33 33 H 1.09000 * 109.47256 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.47429 * 240.00086 * 2 1 3 35 35 H 1.08995 * 109.46799 * 299.99847 * 3 2 1 36 36 H 1.09003 * 109.46638 * 60.00213 * 3 2 1 37 37 H 1.09006 * 109.46875 * 180.02562 * 3 2 1 38 38 H 1.08991 * 109.47537 * 54.99924 * 4 2 1 39 39 H 1.09004 * 109.47190 * 294.99381 * 4 2 1 40 40 H 1.08991 * 109.47716 * 59.99856 * 6 5 4 41 41 H 1.09004 * 109.46910 * 299.99439 * 6 5 4 42 42 H 0.97011 * 120.00261 * 335.00129 * 9 7 6 43 43 H 1.07991 * 119.94470 * 0.02562 * 13 12 10 44 44 H 1.08002 * 120.05367 * 180.23125 * 14 13 12 45 45 H 0.97006 * 119.99354 * 179.97438 * 19 18 16 46 46 H 1.08003 * 120.05982 * 179.97438 * 24 15 14 47 47 H 1.08005 * 119.94292 * 179.97438 * 25 24 15 48 48 H 1.07997 * 126.58502 * 0.03485 * 27 26 7 49 49 H 1.07994 * 126.57950 * 179.97438 * 28 27 26 50 50 H 1.07999 * 125.78312 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 8 3.4642 -0.8239 1.1920 6 6 4.0450 -1.4847 2.3180 7 6 5.5649 -1.5375 2.1502 8 1 6.0003 -2.1182 2.9634 9 7 6.1067 -0.1766 2.1776 10 6 7.3851 0.0325 2.5496 11 8 8.0889 -0.9085 2.8622 12 6 7.9313 1.4039 2.5766 13 6 7.1209 2.4851 2.2098 14 6 7.6193 3.7536 2.2380 15 6 8.9554 3.9745 2.6265 16 6 9.4776 5.2852 2.6515 17 1 10.5412 5.4447 2.5523 18 6 8.6158 6.3806 2.8052 19 7 7.4071 6.2009 3.2676 20 14 9.1957 8.0966 2.3488 21 1 8.8781 8.3635 0.9229 22 1 8.5072 9.0959 3.2047 23 1 10.6630 8.1947 2.5558 24 6 9.7686 2.8829 2.9896 25 6 9.2599 1.6185 2.9630 26 6 5.9026 -2.1862 0.8326 27 6 6.2830 -3.4649 0.6601 28 6 6.4974 -3.6449 -0.7258 29 6 6.2356 -2.4654 -1.3171 30 8 5.8706 -1.5871 -0.3690 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3634 -1.0277 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 3.1301 1.4424 -0.0005 38 1 1.6054 -1.7198 1.2951 39 1 1.7517 -0.1584 2.1370 40 1 3.6521 -2.4990 2.3866 41 1 3.7983 -0.9372 3.2277 42 1 5.5453 0.5741 1.9279 43 1 6.0981 2.3143 1.9084 44 1 6.9923 4.5874 1.9585 45 1 6.8111 6.9588 3.3742 46 1 10.7935 3.0473 3.2877 47 1 9.8826 0.7809 3.2408 48 1 6.4018 -4.2108 1.4319 49 1 6.8118 -4.5546 -1.2156 50 1 6.3028 -2.2608 -2.3754 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095442787.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:25 Heat of formation + Delta-G solvation = -65.201485 kcal Electronic energy + Delta-G solvation = -31781.224228 eV Core-core repulsion = 27546.342686 eV Total energy + Delta-G solvation = -4234.881542 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 357.177 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.32188 -39.28900 -38.38590 -37.12990 -35.64575 -34.19431 -33.85970 -32.75953 -31.08784 -29.66330 -29.40369 -28.07521 -27.27579 -26.13027 -25.62064 -23.21458 -21.98047 -21.48210 -20.93082 -20.44905 -20.07293 -19.57183 -17.59658 -17.47930 -16.89858 -16.83534 -16.17510 -15.80487 -15.56194 -15.29264 -14.89061 -14.48269 -14.26800 -14.01717 -13.88195 -13.49221 -13.24960 -13.15424 -12.83242 -12.68157 -12.61747 -12.58043 -12.37785 -12.26880 -12.13795 -12.02581 -11.87052 -11.60777 -11.34323 -11.27639 -11.12734 -11.03901 -10.94471 -10.74057 -10.64270 -10.03053 -9.76330 -9.68585 -9.54365 -9.34333 -9.02111 -8.78599 -8.24922 -7.70141 -7.53188 -7.02663 -4.59219 1.95707 2.23688 2.78855 2.92048 2.96359 2.98742 3.05881 3.18309 3.43267 3.74268 3.75893 3.89013 4.55158 4.63800 4.67354 4.73980 4.86552 5.00124 5.17106 5.18242 5.21638 5.25596 5.29245 5.39572 5.42460 5.46010 5.57500 5.59907 5.72060 5.77258 5.92115 5.96073 5.99030 6.08508 6.11193 6.13959 6.26881 6.28702 6.33436 6.64150 6.78370 6.83918 6.85184 7.03517 7.06857 7.14962 7.40947 7.45461 7.66861 7.80771 7.87705 8.08466 8.23149 8.41493 8.64432 8.76837 9.05240 9.89288 Molecular weight = 357.18amu Principal moments of inertia in cm(-1) A = 0.009060 B = 0.002859 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3089.919621 B = 9792.416117 C =11841.579105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.094 4.094 3 C -0.146 4.146 4 C 0.066 3.934 5 O -0.373 6.373 6 C 0.055 3.945 7 C 0.233 3.767 8 H 0.125 0.875 9 N -0.730 5.730 10 C 0.574 3.426 11 O -0.572 6.572 12 C -0.283 4.283 13 C -0.060 4.060 14 C -0.178 4.178 15 C 0.129 3.871 16 C -0.443 4.443 17 H 0.085 0.915 18 C 0.075 3.925 19 N -0.771 5.771 20 Si 0.913 3.087 21 H -0.264 1.264 22 H -0.275 1.275 23 H -0.259 1.259 24 C -0.240 4.240 25 C -0.021 4.021 26 C 0.004 3.996 27 C -0.214 4.214 28 C -0.218 4.218 29 C -0.047 4.047 30 O -0.152 6.152 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.054 0.946 34 H 0.077 0.923 35 H 0.052 0.948 36 H 0.053 0.947 37 H 0.067 0.933 38 H 0.045 0.955 39 H 0.049 0.951 40 H 0.065 0.935 41 H 0.067 0.933 42 H 0.406 0.594 43 H 0.089 0.911 44 H 0.120 0.880 45 H 0.286 0.714 46 H 0.098 0.902 47 H 0.101 0.899 48 H 0.143 0.857 49 H 0.143 0.857 50 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.203 -10.820 -5.486 17.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.112 4.112 3 C -0.203 4.203 4 C -0.010 4.010 5 O -0.292 6.292 6 C -0.022 4.022 7 C 0.127 3.873 8 H 0.143 0.857 9 N -0.383 5.383 10 C 0.369 3.631 11 O -0.454 6.454 12 C -0.287 4.287 13 C -0.079 4.079 14 C -0.197 4.197 15 C 0.126 3.874 16 C -0.470 4.470 17 H 0.103 0.897 18 C -0.147 4.147 19 N -0.394 5.394 20 Si 0.737 3.263 21 H -0.189 1.189 22 H -0.200 1.200 23 H -0.183 1.183 24 C -0.259 4.259 25 C -0.040 4.040 26 C -0.049 4.049 27 C -0.234 4.234 28 C -0.237 4.237 29 C -0.116 4.116 30 O -0.046 6.046 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.095 0.905 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.086 0.914 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.242 0.758 43 H 0.107 0.893 44 H 0.138 0.862 45 H 0.097 0.903 46 H 0.116 0.884 47 H 0.119 0.881 48 H 0.161 0.839 49 H 0.160 0.840 50 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -12.910 -10.956 -5.366 17.762 hybrid contribution -0.203 0.696 -0.169 0.744 sum -13.113 -10.260 -5.535 17.546 Atomic orbital electron populations 1.21786 0.94548 1.01716 1.02239 1.21073 0.95158 0.97190 0.97799 1.21796 1.02409 0.94709 1.01395 1.22579 0.81238 0.98944 0.98259 1.87982 1.19819 1.78810 1.42586 1.22842 0.91848 0.97625 0.89908 1.19453 0.91601 0.85687 0.90565 0.85730 1.45898 1.13932 1.07195 1.71311 1.18657 0.80079 0.89809 0.74511 1.90638 1.58709 1.44760 1.51250 1.18843 0.96647 0.90356 1.22852 1.20482 0.96566 0.93166 0.97717 1.20967 0.97289 0.95222 1.06220 1.17787 0.91638 0.92589 0.85381 1.19857 0.95432 0.90446 1.41297 0.89719 1.26095 0.94298 1.02273 0.92008 1.69750 1.06912 1.34317 1.28451 0.86212 0.80391 0.80074 0.79613 1.18928 1.20029 1.18292 1.20715 1.00138 0.92657 1.12395 1.20356 0.93248 0.96120 0.94322 1.22716 1.03830 0.92180 0.86186 1.21483 1.08313 0.96703 0.96927 1.21712 1.08486 0.99248 0.94250 1.23974 1.04659 0.88695 0.94259 1.84083 1.66435 1.39233 1.14832 0.92513 0.92062 0.92739 0.90483 0.92902 0.92830 0.91435 0.93638 0.93257 0.91723 0.91501 0.75785 0.89278 0.86206 0.90261 0.88399 0.88137 0.83892 0.83957 0.78684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.19 37.16 0.34 -0.72 16 2 C -0.09 -0.87 3.16 -90.62 -0.29 -1.16 16 3 C -0.15 -1.50 9.09 37.16 0.34 -1.16 16 4 C 0.07 0.64 5.32 37.16 0.20 0.84 16 5 O -0.37 -4.58 8.98 -35.23 -0.32 -4.89 16 6 C 0.06 0.62 5.67 37.16 0.21 0.83 16 7 C 0.23 3.41 2.83 -69.08 -0.20 3.21 16 8 H 0.13 1.81 7.57 -51.93 -0.39 1.41 16 9 N -0.73 -12.67 4.99 -55.94 -0.28 -12.94 16 10 C 0.57 12.35 7.72 -12.42 -0.10 12.25 16 11 O -0.57 -13.58 15.99 5.29 0.08 -13.50 16 12 C -0.28 -6.55 5.89 -104.73 -0.62 -7.17 16 13 C -0.06 -1.36 9.47 -39.61 -0.38 -1.73 16 14 C -0.18 -4.39 8.63 -39.27 -0.34 -4.73 16 15 C 0.13 3.31 5.58 -106.80 -0.60 2.72 16 16 C -0.44 -11.06 9.04 -37.75 -0.34 -11.40 16 17 H 0.08 2.03 7.91 -52.49 -0.42 1.61 16 18 C 0.07 1.74 5.14 -17.31 -0.09 1.65 16 19 N -0.77 -18.45 10.95 55.56 0.61 -17.84 16 20 Si 0.91 17.33 29.60 -169.99 -5.03 12.30 16 21 H -0.26 -4.98 7.11 56.52 0.40 -4.57 16 22 H -0.28 -5.10 7.11 56.52 0.40 -4.70 16 23 H -0.26 -4.89 7.11 56.52 0.40 -4.49 16 24 C -0.24 -5.86 9.73 -39.27 -0.38 -6.24 16 25 C -0.02 -0.51 9.52 -39.61 -0.38 -0.89 16 26 C 0.00 0.06 5.68 -35.63 -0.20 -0.15 16 27 C -0.21 -3.10 10.80 -39.70 -0.43 -3.53 16 28 C -0.22 -2.88 10.91 -39.70 -0.43 -3.32 16 29 C -0.05 -0.64 12.09 29.42 0.36 -0.28 16 30 O -0.15 -2.48 10.51 5.72 0.06 -2.42 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.82 7.82 -51.93 -0.41 0.42 16 38 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.41 6.70 6.38 -40.82 -0.26 6.44 16 43 H 0.09 1.75 6.37 -52.49 -0.33 1.41 16 44 H 0.12 3.00 6.16 -52.49 -0.32 2.67 16 45 H 0.29 6.16 8.29 -40.82 -0.34 5.82 16 46 H 0.10 2.23 8.06 -52.48 -0.42 1.81 16 47 H 0.10 2.32 7.63 -52.48 -0.40 1.92 16 48 H 0.14 1.78 8.06 -52.49 -0.42 1.36 16 49 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 50 H 0.20 1.89 8.06 -52.49 -0.42 1.46 16 LS Contribution 419.58 15.07 6.32 6.32 Total: -1.00 -29.97 419.58 -9.45 -39.42 By element: Atomic # 1 Polarization: 22.11 SS G_CDS: -7.59 Total: 14.53 kcal Atomic # 6 Polarization: -17.65 SS G_CDS: -3.32 Total: -20.97 kcal Atomic # 7 Polarization: -31.12 SS G_CDS: 0.33 Total: -30.79 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: -0.17 Total: -20.81 kcal Atomic # 14 Polarization: 17.33 SS G_CDS: -5.03 Total: 12.30 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -29.97 -9.45 -39.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095442787.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.782 kcal (2) G-P(sol) polarization free energy of solvation -29.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds