Wall clock time and date at job start Tue Mar 31 2020 05:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47330 * 2 1 4 4 C 1.53000 * 109.47157 * 120.00344 * 2 1 3 5 5 O 1.42905 * 109.47395 * 175.00012 * 4 2 1 6 6 C 1.42894 * 114.00207 * 179.97438 * 5 4 2 7 7 C 1.53005 * 109.47197 * 179.97438 * 6 5 4 8 8 H 1.08996 * 109.47268 * 184.99401 * 7 6 5 9 9 N 1.46499 * 109.47080 * 64.99860 * 7 6 5 10 10 C 1.34773 * 120.00312 * 154.99882 * 9 7 6 11 11 O 1.21587 * 119.99858 * 0.02562 * 10 9 7 12 12 C 1.47642 * 120.00350 * 179.97438 * 10 9 7 13 13 C 1.40014 * 119.89390 * 359.73123 * 12 10 9 14 14 C 1.36317 * 120.10413 * 179.75590 * 13 12 10 15 15 C 1.40886 * 119.89214 * 0.51515 * 14 13 12 16 16 C 1.41110 * 120.10302 * 179.72001 * 15 14 13 17 17 H 1.07999 * 120.00026 * 204.65285 * 16 15 14 18 18 C 1.40224 * 120.00219 * 24.65046 * 16 15 14 19 19 N 1.30648 * 119.99765 * 17.86424 * 18 16 15 20 20 Si 1.86797 * 120.00205 * 197.86692 * 18 16 15 21 21 H 1.48504 * 109.47032 * 89.99659 * 20 18 16 22 22 H 1.48500 * 109.47444 * 209.99768 * 20 18 16 23 23 H 1.48503 * 109.47284 * 330.00109 * 20 18 16 24 24 C 1.40888 * 119.79672 * 359.73729 * 15 14 13 25 25 C 1.36316 * 119.88711 * 0.02562 * 24 15 14 26 26 C 1.50702 * 109.46792 * 305.00030 * 7 6 5 27 27 C 1.34510 * 125.78434 * 259.99525 * 26 7 6 28 28 C 1.41390 * 106.83733 * 180.02562 * 27 26 7 29 29 C 1.34518 * 106.83864 * 0.02562 * 28 27 26 30 30 O 1.34297 * 108.42286 * 359.73726 * 29 28 27 31 31 H 1.09000 * 109.46688 * 299.99855 * 1 2 3 32 32 H 1.08995 * 109.47234 * 59.99786 * 1 2 3 33 33 H 1.09000 * 109.47256 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.47429 * 240.00086 * 2 1 3 35 35 H 1.08995 * 109.46799 * 299.99847 * 3 2 1 36 36 H 1.09003 * 109.46638 * 60.00213 * 3 2 1 37 37 H 1.09006 * 109.46875 * 180.02562 * 3 2 1 38 38 H 1.08991 * 109.47537 * 54.99924 * 4 2 1 39 39 H 1.09004 * 109.47190 * 294.99381 * 4 2 1 40 40 H 1.08991 * 109.47716 * 59.99856 * 6 5 4 41 41 H 1.09004 * 109.46910 * 299.99439 * 6 5 4 42 42 H 0.97011 * 120.00261 * 335.00129 * 9 7 6 43 43 H 1.07991 * 119.94470 * 0.02562 * 13 12 10 44 44 H 1.08002 * 120.05367 * 180.23125 * 14 13 12 45 45 H 0.97006 * 119.99354 * 179.97438 * 19 18 16 46 46 H 1.08003 * 120.05982 * 179.97438 * 24 15 14 47 47 H 1.08005 * 119.94292 * 179.97438 * 25 24 15 48 48 H 1.07997 * 126.58502 * 0.03485 * 27 26 7 49 49 H 1.07994 * 126.57950 * 179.97438 * 28 27 26 50 50 H 1.07999 * 125.78312 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 8 3.4642 -0.8239 1.1920 6 6 4.0450 -1.4847 2.3180 7 6 5.5649 -1.5375 2.1502 8 1 6.0003 -2.1182 2.9634 9 7 6.1067 -0.1766 2.1776 10 6 7.3851 0.0325 2.5496 11 8 8.0889 -0.9085 2.8622 12 6 7.9313 1.4039 2.5766 13 6 7.1209 2.4851 2.2098 14 6 7.6193 3.7536 2.2380 15 6 8.9554 3.9745 2.6265 16 6 9.4776 5.2852 2.6515 17 1 10.5412 5.4447 2.5523 18 6 8.6158 6.3806 2.8052 19 7 7.4071 6.2009 3.2676 20 14 9.1957 8.0966 2.3488 21 1 8.8781 8.3635 0.9229 22 1 8.5072 9.0959 3.2047 23 1 10.6630 8.1947 2.5558 24 6 9.7686 2.8829 2.9896 25 6 9.2599 1.6185 2.9630 26 6 5.9026 -2.1862 0.8326 27 6 6.2830 -3.4649 0.6601 28 6 6.4974 -3.6449 -0.7258 29 6 6.2356 -2.4654 -1.3171 30 8 5.8706 -1.5871 -0.3690 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3634 -1.0277 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 3.1301 1.4424 -0.0005 38 1 1.6054 -1.7198 1.2951 39 1 1.7517 -0.1584 2.1370 40 1 3.6521 -2.4990 2.3866 41 1 3.7983 -0.9372 3.2277 42 1 5.5453 0.5741 1.9279 43 1 6.0981 2.3143 1.9084 44 1 6.9923 4.5874 1.9585 45 1 6.8111 6.9588 3.3742 46 1 10.7935 3.0473 3.2877 47 1 9.8826 0.7809 3.2408 48 1 6.4018 -4.2108 1.4319 49 1 6.8118 -4.5546 -1.2156 50 1 6.3028 -2.2608 -2.3754 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095442787.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:24 Heat of formation + Delta-G solvation = -80.531154 kcal Electronic energy + Delta-G solvation = -31781.888972 eV Core-core repulsion = 27546.342686 eV Total energy + Delta-G solvation = -4235.546286 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 357.177 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.42177 -40.85482 -39.43690 -38.84193 -36.69775 -35.67341 -35.32656 -33.87813 -32.60647 -31.34890 -31.14785 -29.09090 -27.99982 -27.68436 -26.62270 -24.43622 -23.52466 -22.78047 -22.60846 -21.51889 -21.11270 -21.00803 -19.37204 -18.80691 -18.30034 -17.85378 -17.20484 -17.12156 -16.85555 -16.60126 -15.91667 -15.84433 -15.74938 -15.40660 -15.19339 -14.97196 -14.64340 -14.41176 -14.15117 -13.95098 -13.71412 -13.67826 -13.65295 -13.51927 -13.24906 -13.21978 -13.03274 -12.90593 -12.84499 -12.61922 -12.53069 -12.37722 -11.90753 -11.77386 -11.76235 -11.48360 -11.37454 -11.12866 -10.82121 -10.73825 -10.54805 -10.27709 -9.58321 -9.43093 -9.33180 -8.79568 -6.48624 0.42694 0.86209 1.14805 1.38701 1.43363 1.53269 1.72755 2.03460 2.13885 2.17744 2.42550 2.62870 2.79506 3.63822 3.69980 3.81278 3.95575 4.03159 4.13184 4.21063 4.24254 4.27540 4.30291 4.36940 4.43891 4.44814 4.53249 4.57794 4.66731 4.77539 4.82599 4.91782 4.93415 5.00783 5.02032 5.02905 5.07441 5.15145 5.22224 5.24657 5.29311 5.40431 5.42702 5.46209 5.58130 5.67189 5.81344 5.93447 5.99218 6.21971 6.22756 6.33317 6.53556 6.64827 6.76739 6.88364 7.38846 8.15666 Molecular weight = 357.18amu Principal moments of inertia in cm(-1) A = 0.009060 B = 0.002859 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3089.919621 B = 9792.416117 C =11841.579105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.092 4.092 3 C -0.145 4.145 4 C 0.063 3.937 5 O -0.394 6.394 6 C 0.061 3.939 7 C 0.229 3.771 8 H 0.124 0.876 9 N -0.715 5.715 10 C 0.576 3.424 11 O -0.598 6.598 12 C -0.293 4.293 13 C -0.052 4.052 14 C -0.196 4.196 15 C 0.103 3.897 16 C -0.473 4.473 17 H 0.085 0.915 18 C 0.038 3.962 19 N -0.796 5.796 20 Si 0.988 3.012 21 H -0.259 1.259 22 H -0.264 1.264 23 H -0.257 1.257 24 C -0.254 4.254 25 C -0.031 4.031 26 C -0.022 4.022 27 C -0.222 4.222 28 C -0.224 4.224 29 C -0.056 4.056 30 O -0.177 6.177 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.057 0.943 36 H 0.056 0.944 37 H 0.042 0.958 38 H 0.060 0.940 39 H 0.057 0.943 40 H 0.089 0.911 41 H 0.079 0.921 42 H 0.409 0.591 43 H 0.116 0.884 44 H 0.113 0.887 45 H 0.297 0.703 46 H 0.105 0.895 47 H 0.103 0.897 48 H 0.158 0.842 49 H 0.169 0.831 50 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.778 -10.998 -6.110 19.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.111 4.111 3 C -0.202 4.202 4 C -0.013 4.013 5 O -0.314 6.314 6 C -0.016 4.016 7 C 0.123 3.877 8 H 0.142 0.858 9 N -0.367 5.367 10 C 0.370 3.630 11 O -0.482 6.482 12 C -0.297 4.297 13 C -0.071 4.071 14 C -0.216 4.216 15 C 0.100 3.900 16 C -0.500 4.500 17 H 0.103 0.897 18 C -0.181 4.181 19 N -0.420 5.420 20 Si 0.807 3.193 21 H -0.184 1.184 22 H -0.188 1.188 23 H -0.181 1.181 24 C -0.273 4.273 25 C -0.050 4.050 26 C -0.074 4.074 27 C -0.242 4.242 28 C -0.243 4.243 29 C -0.123 4.123 30 O -0.072 6.072 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.061 0.939 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.107 0.893 41 H 0.097 0.903 42 H 0.247 0.753 43 H 0.134 0.866 44 H 0.131 0.869 45 H 0.108 0.892 46 H 0.123 0.877 47 H 0.121 0.879 48 H 0.176 0.824 49 H 0.186 0.814 50 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -14.527 -11.162 -5.992 19.275 hybrid contribution 0.239 0.649 -0.006 0.691 sum -14.288 -10.513 -5.999 18.726 Atomic orbital electron populations 1.21746 0.92762 1.02545 1.02723 1.21074 0.96566 0.96151 0.97305 1.21777 1.00793 0.95788 1.01843 1.22725 0.80011 0.99938 0.98627 1.87961 1.21302 1.79107 1.43028 1.22823 0.89442 0.99234 0.90080 1.19720 0.93810 0.83649 0.90483 0.85827 1.45744 1.12435 1.08927 1.69572 1.18420 0.81249 0.88715 0.74648 1.90616 1.59745 1.45164 1.52659 1.19136 0.96599 0.91684 1.22330 1.20675 0.97680 0.92260 0.96473 1.20986 0.97246 0.95821 1.07518 1.18124 0.92395 0.93387 0.86119 1.20122 0.95986 0.91162 1.42701 0.89655 1.26927 0.94153 1.05874 0.91161 1.69768 1.07863 1.36114 1.28209 0.85108 0.79853 0.74867 0.79430 1.18397 1.18819 1.18111 1.20863 1.00617 0.92838 1.12991 1.20500 0.93956 0.96025 0.94560 1.22877 1.05293 0.92867 0.86314 1.21848 1.07514 0.96721 0.98116 1.22089 1.08105 1.00249 0.93833 1.24728 1.03769 0.88525 0.95299 1.84058 1.67163 1.40458 1.15519 0.91981 0.91648 0.91744 0.91611 0.92352 0.92509 0.93852 0.92192 0.92475 0.89301 0.90264 0.75328 0.86573 0.86893 0.89165 0.87705 0.87872 0.82427 0.81369 0.75593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.19 71.98 0.66 -1.11 16 2 C -0.09 -1.61 3.16 -10.79 -0.03 -1.64 16 3 C -0.14 -2.89 9.09 71.98 0.65 -2.24 16 4 C 0.06 1.11 5.32 71.98 0.38 1.49 16 5 O -0.39 -9.19 8.98 -148.98 -1.34 -10.53 16 6 C 0.06 1.28 5.67 71.98 0.41 1.68 16 7 C 0.23 6.49 2.83 44.25 0.13 6.62 16 8 H 0.12 3.51 7.57 -2.39 -0.02 3.49 16 9 N -0.71 -24.56 4.99 -449.16 -2.24 -26.80 16 10 C 0.58 24.89 7.72 86.73 0.67 25.56 16 11 O -0.60 -28.63 15.99 -3.99 -0.06 -28.69 16 12 C -0.29 -13.78 5.89 -19.93 -0.12 -13.90 16 13 C -0.05 -2.36 9.47 22.25 0.21 -2.15 16 14 C -0.20 -9.92 8.63 22.47 0.19 -9.72 16 15 C 0.10 5.43 5.58 -21.28 -0.12 5.31 16 16 C -0.47 -24.08 9.04 23.46 0.21 -23.87 16 17 H 0.09 4.18 7.91 -2.91 -0.02 4.15 16 18 C 0.04 1.78 5.14 85.35 0.44 2.22 16 19 N -0.80 -38.19 10.95 21.87 0.24 -37.95 16 20 Si 0.99 34.99 29.60 68.60 2.03 37.02 16 21 H -0.26 -8.95 7.11 99.48 0.71 -8.24 16 22 H -0.26 -8.80 7.11 99.48 0.71 -8.10 16 23 H -0.26 -8.98 7.11 99.48 0.71 -8.27 16 24 C -0.25 -12.80 9.73 22.47 0.22 -12.58 16 25 C -0.03 -1.53 9.52 22.25 0.21 -1.32 16 26 C -0.02 -0.66 5.68 24.83 0.14 -0.52 16 27 C -0.22 -6.16 10.80 22.19 0.24 -5.92 16 28 C -0.22 -5.54 10.91 22.19 0.24 -5.29 16 29 C -0.06 -1.43 12.09 66.97 0.81 -0.62 16 30 O -0.18 -5.69 10.51 -2.46 -0.03 -5.72 16 31 H 0.06 0.72 8.14 -2.39 -0.02 0.71 16 32 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.04 1.06 7.82 -2.38 -0.02 1.04 16 38 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 40 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 42 H 0.41 13.33 6.38 -92.70 -0.59 12.74 16 43 H 0.12 4.52 6.37 -2.91 -0.02 4.50 16 44 H 0.11 5.78 6.16 -2.91 -0.02 5.76 16 45 H 0.30 12.64 8.29 -92.70 -0.77 11.87 16 46 H 0.10 4.96 8.06 -2.91 -0.02 4.94 16 47 H 0.10 4.91 7.63 -2.91 -0.02 4.89 16 48 H 0.16 3.71 8.06 -2.91 -0.02 3.69 16 49 H 0.17 3.12 8.06 -2.91 -0.02 3.10 16 50 H 0.23 3.92 8.06 -2.91 -0.02 3.89 16 Total: -1.00 -65.64 419.58 4.51 -61.13 By element: Atomic # 1 Polarization: 49.19 SS G_CDS: 0.35 Total: 49.55 kcal Atomic # 6 Polarization: -43.56 SS G_CDS: 5.55 Total: -38.01 kcal Atomic # 7 Polarization: -62.75 SS G_CDS: -2.00 Total: -64.75 kcal Atomic # 8 Polarization: -43.51 SS G_CDS: -1.43 Total: -44.94 kcal Atomic # 14 Polarization: 34.99 SS G_CDS: 2.03 Total: 37.02 kcal Total: -65.64 4.51 -61.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095442787.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.398 kcal (2) G-P(sol) polarization free energy of solvation -65.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds