Wall clock time and date at job start Tue Mar 31 2020 05:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47483 * 2 1 4 4 C 1.53005 * 109.46912 * 119.99887 * 2 1 3 5 5 O 1.42900 * 109.47132 * 174.99780 * 4 2 1 6 6 C 1.42897 * 114.00184 * 179.97438 * 5 4 2 7 7 C 1.53005 * 109.47011 * 179.97438 * 6 5 4 8 8 H 1.09001 * 109.46784 * 175.00355 * 7 6 5 9 9 N 1.46490 * 109.47316 * 295.00022 * 7 6 5 10 10 C 1.34780 * 120.00427 * 205.00154 * 9 7 6 11 11 O 1.21589 * 119.99465 * 0.02562 * 10 9 7 12 12 C 1.47636 * 120.00414 * 179.97438 * 10 9 7 13 13 C 1.40011 * 119.89616 * 179.97438 * 12 10 9 14 14 C 1.36310 * 120.10924 * 179.74696 * 13 12 10 15 15 C 1.40888 * 119.89369 * 0.25762 * 14 13 12 16 16 C 1.41113 * 120.11022 * 180.02562 * 15 14 13 17 17 H 1.07999 * 120.00340 * 204.64020 * 16 15 14 18 18 C 1.40225 * 119.99501 * 24.64249 * 16 15 14 19 19 N 1.30650 * 120.00211 * 17.87474 * 18 16 15 20 20 Si 1.86794 * 120.00050 * 197.87472 * 18 16 15 21 21 H 1.48506 * 109.47002 * 59.99738 * 20 18 16 22 22 H 1.48498 * 109.47634 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47267 * 300.00310 * 20 18 16 24 24 C 1.40889 * 119.79085 * 0.02562 * 15 14 13 25 25 C 1.36318 * 119.88917 * 359.97438 * 24 15 14 26 26 C 1.50699 * 109.47206 * 55.00341 * 7 6 5 27 27 C 1.34511 * 125.79079 * 99.71232 * 26 7 6 28 28 C 1.41382 * 106.84467 * 179.89027 * 27 26 7 29 29 C 1.34516 * 106.83597 * 0.37470 * 28 27 26 30 30 O 1.34302 * 125.78759 * 280.02626 * 26 7 6 31 31 H 1.08997 * 109.46841 * 300.00433 * 1 2 3 32 32 H 1.08994 * 109.46770 * 60.00328 * 1 2 3 33 33 H 1.09001 * 109.47468 * 180.02562 * 1 2 3 34 34 H 1.09005 * 109.47101 * 239.99452 * 2 1 3 35 35 H 1.08997 * 109.47436 * 59.99931 * 3 2 1 36 36 H 1.09000 * 109.47182 * 180.02562 * 3 2 1 37 37 H 1.09003 * 109.46579 * 299.99620 * 3 2 1 38 38 H 1.08996 * 109.47312 * 54.99933 * 4 2 1 39 39 H 1.08996 * 109.47182 * 294.99790 * 4 2 1 40 40 H 1.09002 * 109.47018 * 60.00197 * 6 5 4 41 41 H 1.08994 * 109.47317 * 300.00428 * 6 5 4 42 42 H 0.97003 * 120.00332 * 24.99900 * 9 7 6 43 43 H 1.08001 * 119.94548 * 0.03305 * 13 12 10 44 44 H 1.08001 * 120.05980 * 180.28209 * 14 13 12 45 45 H 0.97002 * 120.00128 * 179.97438 * 19 18 16 46 46 H 1.07999 * 120.05749 * 180.02562 * 24 15 14 47 47 H 1.08002 * 119.94435 * 180.02562 * 25 24 15 48 48 H 1.08004 * 126.57670 * 0.02562 * 27 26 7 49 49 H 1.07993 * 126.58169 * 180.16398 * 28 27 26 50 50 H 1.07996 * 125.79165 * 179.75370 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 8 3.4641 -0.8239 1.1921 6 6 4.0450 -1.4847 2.3181 7 6 5.5649 -1.5374 2.1503 8 1 6.0150 -1.9611 3.0481 9 7 5.8999 -2.3735 0.9951 10 6 7.1016 -2.9802 0.9280 11 8 7.9074 -2.8338 1.8267 12 6 7.4390 -3.8233 -0.2360 13 6 8.6882 -4.4520 -0.3036 14 6 9.0024 -5.2355 -1.3739 15 6 8.0698 -5.4079 -2.4158 16 6 8.3900 -6.2185 -3.5256 17 1 7.8983 -6.0554 -4.4732 18 6 9.3467 -7.2357 -3.3980 19 7 9.6845 -7.6698 -2.2129 20 14 10.1380 -7.9702 -4.9223 21 1 10.8464 -6.9038 -5.6749 22 1 11.1087 -9.0193 -4.5195 23 1 9.0886 -8.5708 -5.7844 24 6 6.8163 -4.7684 -2.3461 25 6 6.5112 -3.9868 -1.2717 26 6 6.0949 -0.1437 1.9323 27 6 6.6640 0.6369 2.8684 28 6 7.0136 1.8504 2.2327 29 6 6.6297 1.7419 0.9480 30 8 6.0738 0.5321 0.7719 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 1.8934 -0.5139 -0.8900 35 1 1.6768 1.9563 0.8899 36 1 3.1301 1.4424 -0.0005 37 1 1.6768 1.9562 -0.8901 38 1 1.6054 -1.7198 1.2953 39 1 1.7516 -0.1583 2.1370 40 1 3.6520 -2.4990 2.3867 41 1 3.7982 -0.9372 3.2278 42 1 5.2569 -2.4906 0.2783 43 1 9.4023 -4.3197 0.4957 44 1 9.9644 -5.7238 -1.4230 45 1 10.3460 -8.3737 -2.1247 46 1 6.0980 -4.8979 -3.1421 47 1 5.5505 -3.4964 -1.2172 48 1 6.8252 0.3841 3.9060 49 1 7.4935 2.7022 2.6913 50 1 6.7480 2.4994 0.1874 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095442788.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:29 Heat of formation + Delta-G solvation = -64.851600 kcal Electronic energy + Delta-G solvation = -31598.116015 eV Core-core repulsion = 27363.249645 eV Total energy + Delta-G solvation = -4234.866369 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 357.177 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.32955 -39.29491 -38.40821 -37.12785 -35.67729 -34.20345 -33.87227 -32.76406 -30.99604 -29.89887 -29.26025 -28.08013 -27.34702 -26.14447 -25.62788 -23.20571 -22.01724 -21.51053 -20.91072 -20.49957 -20.02441 -19.59579 -17.64894 -17.46133 -16.92095 -16.77160 -16.40037 -15.69325 -15.38445 -15.28831 -15.11771 -14.51421 -14.22542 -14.01741 -13.89904 -13.53212 -13.28819 -13.04936 -12.86031 -12.76758 -12.60662 -12.60608 -12.46574 -12.23575 -12.16543 -12.09484 -11.83334 -11.61980 -11.36709 -11.21162 -11.19413 -11.08470 -10.97425 -10.78299 -10.61311 -10.05515 -9.78893 -9.69343 -9.51464 -9.31009 -9.03395 -8.79450 -8.25522 -7.67230 -7.54774 -7.00332 -4.58402 1.94919 2.25162 2.78320 2.93011 2.96270 2.99628 3.06380 3.17268 3.40831 3.73618 3.75924 3.90139 4.56102 4.59571 4.65357 4.71795 4.83474 4.96907 5.15853 5.16753 5.20257 5.23355 5.25932 5.36841 5.40018 5.43509 5.52353 5.60654 5.64355 5.73359 5.85871 5.95633 5.97703 6.03909 6.06970 6.12912 6.18227 6.26398 6.31440 6.63425 6.82097 6.82595 6.88675 7.02422 7.08754 7.12558 7.40266 7.46236 7.64489 7.80013 7.89716 8.07622 8.24492 8.45033 8.65034 8.77806 9.05468 9.91520 Molecular weight = 357.18amu Principal moments of inertia in cm(-1) A = 0.011431 B = 0.002426 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2448.883069 B =11538.035685 C =12891.753616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.095 4.095 3 C -0.143 4.143 4 C 0.066 3.934 5 O -0.373 6.373 6 C 0.055 3.945 7 C 0.233 3.767 8 H 0.125 0.875 9 N -0.731 5.731 10 C 0.573 3.427 11 O -0.569 6.569 12 C -0.282 4.282 13 C -0.035 4.035 14 C -0.183 4.183 15 C 0.129 3.871 16 C -0.444 4.444 17 H 0.084 0.916 18 C 0.074 3.926 19 N -0.769 5.769 20 Si 0.914 3.086 21 H -0.260 1.260 22 H -0.276 1.276 23 H -0.263 1.263 24 C -0.235 4.235 25 C -0.047 4.047 26 C 0.004 3.996 27 C -0.214 4.214 28 C -0.217 4.217 29 C -0.048 4.048 30 O -0.152 6.152 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.080 0.920 35 H 0.049 0.951 36 H 0.065 0.935 37 H 0.051 0.949 38 H 0.048 0.952 39 H 0.046 0.954 40 H 0.067 0.933 41 H 0.065 0.935 42 H 0.405 0.595 43 H 0.100 0.900 44 H 0.121 0.879 45 H 0.288 0.712 46 H 0.097 0.903 47 H 0.090 0.910 48 H 0.143 0.857 49 H 0.143 0.857 50 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.475 13.294 6.091 19.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 C -0.200 4.200 4 C -0.010 4.010 5 O -0.292 6.292 6 C -0.022 4.022 7 C 0.127 3.873 8 H 0.143 0.857 9 N -0.384 5.384 10 C 0.369 3.631 11 O -0.451 6.451 12 C -0.286 4.286 13 C -0.054 4.054 14 C -0.203 4.203 15 C 0.126 3.874 16 C -0.471 4.471 17 H 0.102 0.898 18 C -0.148 4.148 19 N -0.392 5.392 20 Si 0.737 3.263 21 H -0.185 1.185 22 H -0.200 1.200 23 H -0.187 1.187 24 C -0.255 4.255 25 C -0.066 4.066 26 C -0.049 4.049 27 C -0.234 4.234 28 C -0.236 4.236 29 C -0.116 4.116 30 O -0.046 6.046 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.099 0.901 35 H 0.068 0.932 36 H 0.084 0.916 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.241 0.759 43 H 0.118 0.882 44 H 0.138 0.862 45 H 0.099 0.901 46 H 0.115 0.885 47 H 0.108 0.892 48 H 0.161 0.839 49 H 0.160 0.840 50 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -12.780 13.146 6.431 19.429 hybrid contribution 0.044 -0.300 -0.507 0.591 sum -12.736 12.846 5.924 19.034 Atomic orbital electron populations 1.21784 0.94490 1.01938 1.02078 1.21082 0.95220 0.97017 0.98030 1.21767 1.02273 0.94973 1.01019 1.22575 0.81273 0.99124 0.98051 1.87980 1.19792 1.78855 1.42592 1.22843 0.91912 0.97484 0.89954 1.19449 0.92192 0.83050 0.92620 0.85730 1.45902 1.18765 1.50597 1.23175 1.18669 0.79928 0.78001 0.86519 1.90646 1.48958 1.64711 1.40761 1.18847 0.99238 1.12720 0.97822 1.20471 0.94166 0.94018 0.96788 1.21009 1.00613 1.02606 0.96040 1.17777 0.89595 0.88256 0.91767 1.19807 1.17785 1.11767 0.97750 0.89785 1.26104 0.95071 0.96040 0.97549 1.69744 1.24036 1.20808 1.24639 0.86268 0.79512 0.79058 0.81457 1.18473 1.20041 1.18692 1.20663 0.97634 1.07214 0.99946 1.20372 0.96121 0.96302 0.93762 1.22706 1.03107 0.95234 0.83835 1.21484 1.06181 0.95063 1.00692 1.21708 1.07318 0.99920 0.94666 1.23966 1.01909 0.87287 0.98471 1.84079 1.62071 1.24308 1.34137 0.92694 0.92051 0.92509 0.90134 0.93232 0.91553 0.92979 0.93332 0.93555 0.91526 0.91705 0.75889 0.88211 0.86160 0.90118 0.88509 0.89210 0.83905 0.83966 0.78704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.19 37.16 0.34 -0.66 16 2 C -0.10 -0.84 3.16 -90.62 -0.29 -1.12 16 3 C -0.14 -1.30 9.09 37.16 0.34 -0.97 16 4 C 0.07 0.61 5.32 37.16 0.20 0.81 16 5 O -0.37 -4.41 8.98 -35.23 -0.32 -4.73 16 6 C 0.06 0.61 5.67 37.16 0.21 0.82 16 7 C 0.23 3.36 2.83 -69.09 -0.20 3.16 16 8 H 0.13 1.80 7.57 -51.93 -0.39 1.40 16 9 N -0.73 -12.48 4.99 -55.94 -0.28 -12.76 16 10 C 0.57 12.35 7.72 -12.42 -0.10 12.25 16 11 O -0.57 -13.68 15.98 5.29 0.08 -13.60 16 12 C -0.28 -6.55 5.89 -104.73 -0.62 -7.16 16 13 C -0.03 -0.87 9.52 -39.61 -0.38 -1.25 16 14 C -0.18 -4.75 8.64 -39.27 -0.34 -5.08 16 15 C 0.13 3.32 5.58 -106.80 -0.60 2.73 16 16 C -0.44 -11.11 9.04 -37.75 -0.34 -11.45 16 17 H 0.08 1.99 7.91 -52.49 -0.42 1.57 16 18 C 0.07 1.75 5.14 -17.31 -0.09 1.66 16 19 N -0.77 -18.92 10.95 55.56 0.61 -18.31 16 20 Si 0.91 17.52 29.60 -169.99 -5.03 12.48 16 21 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 22 H -0.28 -5.15 7.11 56.52 0.40 -4.75 16 23 H -0.26 -4.95 7.11 56.52 0.40 -4.54 16 24 C -0.24 -5.51 9.73 -39.27 -0.38 -5.89 16 25 C -0.05 -1.01 9.47 -39.61 -0.38 -1.39 16 26 C 0.00 0.06 5.67 -35.63 -0.20 -0.14 16 27 C -0.21 -3.07 10.80 -39.70 -0.43 -3.50 16 28 C -0.22 -2.84 10.91 -39.70 -0.43 -3.28 16 29 C -0.05 -0.63 12.09 29.42 0.36 -0.28 16 30 O -0.15 -2.43 10.52 5.70 0.06 -2.37 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.74 7.82 -51.93 -0.41 0.33 16 37 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.40 6.46 6.38 -40.82 -0.26 6.20 16 43 H 0.10 2.45 7.63 -52.49 -0.40 2.05 16 44 H 0.12 3.17 6.16 -52.49 -0.32 2.85 16 45 H 0.29 6.39 8.29 -40.82 -0.34 6.05 16 46 H 0.10 2.09 8.06 -52.49 -0.42 1.66 16 47 H 0.09 1.64 6.37 -52.49 -0.33 1.31 16 48 H 0.14 1.78 8.06 -52.48 -0.42 1.35 16 49 H 0.14 1.49 8.06 -52.49 -0.42 1.07 16 50 H 0.20 1.84 8.06 -52.49 -0.42 1.42 16 LS Contribution 419.59 15.07 6.32 6.32 Total: -1.00 -30.30 419.59 -9.45 -39.76 By element: Atomic # 1 Polarization: 21.53 SS G_CDS: -7.59 Total: 13.94 kcal Atomic # 6 Polarization: -17.43 SS G_CDS: -3.32 Total: -20.74 kcal Atomic # 7 Polarization: -31.39 SS G_CDS: 0.33 Total: -31.06 kcal Atomic # 8 Polarization: -20.53 SS G_CDS: -0.17 Total: -20.70 kcal Atomic # 14 Polarization: 17.52 SS G_CDS: -5.03 Total: 12.48 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -30.30 -9.45 -39.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095442788.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.095 kcal (2) G-P(sol) polarization free energy of solvation -30.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds