Wall clock time and date at job start Tue Mar 31 2020 05:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47483 * 2 1 4 4 C 1.53005 * 109.46912 * 119.99887 * 2 1 3 5 5 O 1.42900 * 109.47132 * 174.99780 * 4 2 1 6 6 C 1.42897 * 114.00184 * 179.97438 * 5 4 2 7 7 C 1.53005 * 109.47011 * 179.97438 * 6 5 4 8 8 H 1.09001 * 109.46784 * 175.00355 * 7 6 5 9 9 N 1.46490 * 109.47316 * 295.00022 * 7 6 5 10 10 C 1.34780 * 120.00427 * 205.00154 * 9 7 6 11 11 O 1.21589 * 119.99465 * 0.02562 * 10 9 7 12 12 C 1.47636 * 120.00414 * 179.97438 * 10 9 7 13 13 C 1.40011 * 119.89616 * 179.97438 * 12 10 9 14 14 C 1.36310 * 120.10924 * 179.74696 * 13 12 10 15 15 C 1.40888 * 119.89369 * 0.25762 * 14 13 12 16 16 C 1.41113 * 120.11022 * 180.02562 * 15 14 13 17 17 H 1.07999 * 120.00340 * 204.64020 * 16 15 14 18 18 C 1.40225 * 119.99501 * 24.64249 * 16 15 14 19 19 N 1.30650 * 120.00211 * 17.87474 * 18 16 15 20 20 Si 1.86794 * 120.00050 * 197.87472 * 18 16 15 21 21 H 1.48506 * 109.47002 * 59.99738 * 20 18 16 22 22 H 1.48498 * 109.47634 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47267 * 300.00310 * 20 18 16 24 24 C 1.40889 * 119.79085 * 0.02562 * 15 14 13 25 25 C 1.36318 * 119.88917 * 359.97438 * 24 15 14 26 26 C 1.50699 * 109.47206 * 55.00341 * 7 6 5 27 27 C 1.34511 * 125.79079 * 99.71232 * 26 7 6 28 28 C 1.41382 * 106.84467 * 179.89027 * 27 26 7 29 29 C 1.34516 * 106.83597 * 0.37470 * 28 27 26 30 30 O 1.34302 * 125.78759 * 280.02626 * 26 7 6 31 31 H 1.08997 * 109.46841 * 300.00433 * 1 2 3 32 32 H 1.08994 * 109.46770 * 60.00328 * 1 2 3 33 33 H 1.09001 * 109.47468 * 180.02562 * 1 2 3 34 34 H 1.09005 * 109.47101 * 239.99452 * 2 1 3 35 35 H 1.08997 * 109.47436 * 59.99931 * 3 2 1 36 36 H 1.09000 * 109.47182 * 180.02562 * 3 2 1 37 37 H 1.09003 * 109.46579 * 299.99620 * 3 2 1 38 38 H 1.08996 * 109.47312 * 54.99933 * 4 2 1 39 39 H 1.08996 * 109.47182 * 294.99790 * 4 2 1 40 40 H 1.09002 * 109.47018 * 60.00197 * 6 5 4 41 41 H 1.08994 * 109.47317 * 300.00428 * 6 5 4 42 42 H 0.97003 * 120.00332 * 24.99900 * 9 7 6 43 43 H 1.08001 * 119.94548 * 0.03305 * 13 12 10 44 44 H 1.08001 * 120.05980 * 180.28209 * 14 13 12 45 45 H 0.97002 * 120.00128 * 179.97438 * 19 18 16 46 46 H 1.07999 * 120.05749 * 180.02562 * 24 15 14 47 47 H 1.08002 * 119.94435 * 180.02562 * 25 24 15 48 48 H 1.08004 * 126.57670 * 0.02562 * 27 26 7 49 49 H 1.07993 * 126.58169 * 180.16398 * 28 27 26 50 50 H 1.07996 * 125.79165 * 179.75370 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 8 3.4641 -0.8239 1.1921 6 6 4.0450 -1.4847 2.3181 7 6 5.5649 -1.5374 2.1503 8 1 6.0150 -1.9611 3.0481 9 7 5.8999 -2.3735 0.9951 10 6 7.1016 -2.9802 0.9280 11 8 7.9074 -2.8338 1.8267 12 6 7.4390 -3.8233 -0.2360 13 6 8.6882 -4.4520 -0.3036 14 6 9.0024 -5.2355 -1.3739 15 6 8.0698 -5.4079 -2.4158 16 6 8.3900 -6.2185 -3.5256 17 1 7.8983 -6.0554 -4.4732 18 6 9.3467 -7.2357 -3.3980 19 7 9.6845 -7.6698 -2.2129 20 14 10.1380 -7.9702 -4.9223 21 1 10.8464 -6.9038 -5.6749 22 1 11.1087 -9.0193 -4.5195 23 1 9.0886 -8.5708 -5.7844 24 6 6.8163 -4.7684 -2.3461 25 6 6.5112 -3.9868 -1.2717 26 6 6.0949 -0.1437 1.9323 27 6 6.6640 0.6369 2.8684 28 6 7.0136 1.8504 2.2327 29 6 6.6297 1.7419 0.9480 30 8 6.0738 0.5321 0.7719 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 1.8934 -0.5139 -0.8900 35 1 1.6768 1.9563 0.8899 36 1 3.1301 1.4424 -0.0005 37 1 1.6768 1.9562 -0.8901 38 1 1.6054 -1.7198 1.2953 39 1 1.7516 -0.1583 2.1370 40 1 3.6520 -2.4990 2.3867 41 1 3.7982 -0.9372 3.2278 42 1 5.2569 -2.4906 0.2783 43 1 9.4023 -4.3197 0.4957 44 1 9.9644 -5.7238 -1.4230 45 1 10.3460 -8.3737 -2.1247 46 1 6.0980 -4.8979 -3.1421 47 1 5.5505 -3.4964 -1.2172 48 1 6.8252 0.3841 3.9060 49 1 7.4935 2.7022 2.6913 50 1 6.7480 2.4994 0.1874 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095442788.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:27 Heat of formation + Delta-G solvation = -80.723629 kcal Electronic energy + Delta-G solvation = -31598.804277 eV Core-core repulsion = 27363.249645 eV Total energy + Delta-G solvation = -4235.554632 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 357.177 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.41427 -40.85483 -39.42737 -38.83853 -36.69512 -35.70001 -35.30248 -33.86826 -32.47872 -31.69628 -30.93060 -29.08005 -27.98866 -27.68566 -26.60584 -24.40334 -23.60309 -22.77521 -22.56013 -21.50784 -21.07985 -21.04097 -19.37601 -18.80787 -18.33892 -17.77345 -17.34126 -17.09277 -16.73190 -16.48352 -16.14412 -15.77276 -15.69788 -15.48399 -15.08795 -15.05756 -14.61756 -14.38528 -14.05855 -13.91363 -13.82265 -13.68623 -13.65211 -13.57634 -13.24007 -13.17780 -13.08604 -12.83796 -12.78675 -12.64323 -12.55340 -12.34870 -11.89816 -11.80658 -11.75641 -11.46590 -11.36146 -11.11585 -10.82677 -10.73960 -10.53777 -10.27887 -9.57487 -9.43710 -9.32586 -8.79289 -6.48683 0.43178 0.86875 1.15140 1.37639 1.44144 1.51915 1.73031 2.03461 2.12872 2.17629 2.42674 2.63279 2.80048 3.64544 3.70147 3.82466 3.97231 4.04666 4.13580 4.21317 4.25030 4.28513 4.32542 4.38055 4.40947 4.45196 4.53757 4.59049 4.68302 4.79358 4.83324 4.93938 4.96539 5.00699 5.01656 5.02373 5.08647 5.20314 5.22655 5.25444 5.26413 5.40972 5.43845 5.46664 5.58262 5.67184 5.78457 5.94477 6.01137 6.19957 6.23505 6.33667 6.55269 6.67018 6.76258 6.88922 7.39811 8.15678 Molecular weight = 357.18amu Principal moments of inertia in cm(-1) A = 0.011431 B = 0.002426 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2448.883069 B =11538.035685 C =12891.753616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.096 4.096 3 C -0.139 4.139 4 C 0.063 3.937 5 O -0.393 6.393 6 C 0.062 3.938 7 C 0.229 3.771 8 H 0.122 0.878 9 N -0.713 5.713 10 C 0.575 3.425 11 O -0.600 6.600 12 C -0.293 4.293 13 C -0.048 4.048 14 C -0.204 4.204 15 C 0.102 3.898 16 C -0.472 4.472 17 H 0.092 0.908 18 C 0.034 3.966 19 N -0.802 5.802 20 Si 0.989 3.011 21 H -0.259 1.259 22 H -0.267 1.267 23 H -0.252 1.252 24 C -0.246 4.246 25 C -0.036 4.036 26 C -0.020 4.020 27 C -0.224 4.224 28 C -0.225 4.225 29 C -0.054 4.054 30 O -0.174 6.174 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.055 0.945 36 H 0.042 0.958 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.057 0.943 40 H 0.081 0.919 41 H 0.087 0.913 42 H 0.411 0.589 43 H 0.091 0.909 44 H 0.105 0.895 45 H 0.296 0.704 46 H 0.115 0.885 47 H 0.128 0.872 48 H 0.156 0.844 49 H 0.167 0.833 50 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.298 14.160 5.643 21.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.114 4.114 3 C -0.196 4.196 4 C -0.013 4.013 5 O -0.313 6.313 6 C -0.015 4.015 7 C 0.123 3.877 8 H 0.139 0.861 9 N -0.365 5.365 10 C 0.369 3.631 11 O -0.484 6.484 12 C -0.297 4.297 13 C -0.068 4.068 14 C -0.223 4.223 15 C 0.099 3.901 16 C -0.499 4.499 17 H 0.110 0.890 18 C -0.185 4.185 19 N -0.426 5.426 20 Si 0.808 3.192 21 H -0.183 1.183 22 H -0.192 1.192 23 H -0.176 1.176 24 C -0.265 4.265 25 C -0.054 4.054 26 C -0.072 4.072 27 C -0.244 4.244 28 C -0.243 4.243 29 C -0.122 4.122 30 O -0.069 6.069 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.061 0.939 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.099 0.901 41 H 0.105 0.895 42 H 0.249 0.751 43 H 0.110 0.890 44 H 0.123 0.877 45 H 0.107 0.893 46 H 0.133 0.867 47 H 0.145 0.855 48 H 0.174 0.826 49 H 0.185 0.815 50 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -14.654 14.037 5.997 21.160 hybrid contribution 0.568 -0.456 -0.287 0.783 sum -14.086 13.581 5.710 20.383 Atomic orbital electron populations 1.21746 0.92845 1.02497 1.02715 1.21102 0.96532 0.96451 0.97356 1.21716 1.00642 0.95550 1.01690 1.22723 0.79986 0.99970 0.98615 1.87957 1.21285 1.79094 1.42976 1.22807 0.89312 0.98709 0.90637 1.19706 0.94746 0.82185 0.91036 0.86068 1.45702 1.17092 1.49610 1.24125 1.18438 0.80975 0.78095 0.85585 1.90623 1.50270 1.65879 1.41621 1.19126 0.98864 1.12677 0.99063 1.20534 0.95185 0.94594 0.96449 1.20944 1.00513 1.03713 0.97137 1.18128 0.90545 0.89283 0.92117 1.20135 1.19265 1.12515 0.97961 0.88971 1.27024 0.94872 0.95945 1.00669 1.69797 1.24525 1.21387 1.26844 0.85140 0.78621 0.78220 0.77187 1.18314 1.19158 1.17626 1.20924 0.97240 1.07317 1.01036 1.20653 0.97143 0.95277 0.92377 1.22863 1.04385 0.95784 0.84195 1.21840 1.05577 0.95584 1.01392 1.22076 1.07251 1.00313 0.94708 1.24709 1.00925 0.86944 0.99618 1.84053 1.62826 1.25431 1.34639 0.91851 0.91642 0.92002 0.91548 0.92544 0.93929 0.92334 0.92289 0.92456 0.90080 0.89482 0.75134 0.89038 0.87721 0.89319 0.86684 0.85453 0.82610 0.81496 0.75588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 9.19 71.98 0.66 -0.97 16 2 C -0.10 -1.53 3.16 -10.79 -0.03 -1.57 16 3 C -0.14 -2.35 9.09 71.98 0.65 -1.70 16 4 C 0.06 1.03 5.32 71.98 0.38 1.41 16 5 O -0.39 -8.65 8.98 -148.98 -1.34 -9.98 16 6 C 0.06 1.24 5.67 71.98 0.41 1.65 16 7 C 0.23 6.37 2.83 44.25 0.13 6.49 16 8 H 0.12 3.44 7.57 -2.39 -0.02 3.43 16 9 N -0.71 -23.78 4.99 -449.17 -2.24 -26.02 16 10 C 0.57 24.87 7.72 86.72 0.67 25.54 16 11 O -0.60 -29.36 15.98 -4.00 -0.06 -29.43 16 12 C -0.29 -13.76 5.89 -19.94 -0.12 -13.88 16 13 C -0.05 -2.50 9.52 22.25 0.21 -2.29 16 14 C -0.20 -11.01 8.64 22.47 0.19 -10.82 16 15 C 0.10 5.39 5.58 -21.28 -0.12 5.27 16 16 C -0.47 -23.94 9.04 23.46 0.21 -23.73 16 17 H 0.09 4.36 7.91 -2.91 -0.02 4.34 16 18 C 0.03 1.61 5.14 85.35 0.44 2.05 16 19 N -0.80 -40.37 10.95 21.87 0.24 -40.14 16 20 Si 0.99 35.60 29.60 68.60 2.03 37.63 16 21 H -0.26 -9.20 7.11 99.48 0.71 -8.49 16 22 H -0.27 -9.17 7.11 99.48 0.71 -8.46 16 23 H -0.25 -8.64 7.11 99.48 0.71 -7.93 16 24 C -0.25 -11.48 9.73 22.47 0.22 -11.26 16 25 C -0.04 -1.53 9.47 22.25 0.21 -1.32 16 26 C -0.02 -0.61 5.67 24.83 0.14 -0.47 16 27 C -0.22 -6.21 10.80 22.19 0.24 -5.97 16 28 C -0.22 -5.54 10.91 22.19 0.24 -5.30 16 29 C -0.05 -1.37 12.09 66.97 0.81 -0.56 16 30 O -0.17 -5.47 10.52 -2.51 -0.03 -5.49 16 31 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 35 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.04 0.92 7.82 -2.39 -0.02 0.90 16 37 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.41 12.50 6.38 -92.71 -0.59 11.91 16 43 H 0.09 4.76 7.63 -2.91 -0.02 4.74 16 44 H 0.10 5.85 6.16 -2.91 -0.02 5.84 16 45 H 0.30 13.37 8.29 -92.71 -0.77 12.60 16 46 H 0.12 4.84 8.06 -2.91 -0.02 4.82 16 47 H 0.13 4.39 6.37 -2.91 -0.02 4.37 16 48 H 0.16 3.72 8.06 -2.91 -0.02 3.69 16 49 H 0.17 3.12 8.06 -2.91 -0.02 3.10 16 50 H 0.23 3.82 8.06 -2.91 -0.02 3.79 16 Total: -1.00 -67.51 419.59 4.50 -63.00 By element: Atomic # 1 Polarization: 47.48 SS G_CDS: 0.35 Total: 47.83 kcal Atomic # 6 Polarization: -42.96 SS G_CDS: 5.55 Total: -37.41 kcal Atomic # 7 Polarization: -64.15 SS G_CDS: -2.00 Total: -66.15 kcal Atomic # 8 Polarization: -43.48 SS G_CDS: -1.43 Total: -44.90 kcal Atomic # 14 Polarization: 35.60 SS G_CDS: 2.03 Total: 37.63 kcal Total: -67.51 4.50 -63.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095442788.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.719 kcal (2) G-P(sol) polarization free energy of solvation -67.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds