Wall clock time and date at job start Tue Mar 31 2020 05:19:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99969 * 2 1 4 4 H 1.48500 * 109.47120 * 269.99870 * 3 2 1 5 5 H 1.48503 * 109.47470 * 29.99923 * 3 2 1 6 6 H 1.48496 * 109.47097 * 150.00113 * 3 2 1 7 7 C 1.37877 * 120.00215 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99575 * 0.02562 * 7 2 1 9 9 C 1.50694 * 120.00463 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.47550 * 180.02562 * 9 7 2 11 11 N 1.46898 * 109.47226 * 180.02562 * 10 9 7 12 12 C 1.46956 * 110.99812 * 169.99944 * 11 10 9 13 13 C 1.53053 * 109.36357 * 183.18714 * 12 11 10 14 14 N 1.46957 * 109.36620 * 301.59916 * 13 12 11 15 15 C 1.46898 * 111.00130 * 183.18689 * 14 13 12 16 16 H 1.08998 * 109.33205 * 183.72616 * 15 14 13 17 17 C 1.53064 * 109.40001 * 303.51610 * 15 14 13 18 18 C 1.53347 * 108.42482 * 169.02670 * 17 15 14 19 19 C 1.52921 * 108.67543 * 292.47102 * 18 17 15 20 20 N 1.45745 * 110.48770 * 50.74988 * 19 18 17 21 21 C 1.39928 * 117.94858 * 160.92635 * 20 19 18 22 22 C 1.38871 * 120.06901 * 89.18086 * 21 20 19 23 23 C 1.38121 * 119.92794 * 180.23411 * 22 21 20 24 24 C 1.38288 * 120.06709 * 359.47435 * 23 22 21 25 25 C 1.38280 * 120.14121 * 0.55066 * 24 23 22 26 26 C 1.38116 * 120.07137 * 359.70254 * 25 24 23 27 27 C 1.33357 * 124.11050 * 341.20568 * 20 19 18 28 28 O 1.21286 * 118.24655 * 181.94429 * 27 20 19 29 29 C 1.46952 * 110.87823 * 59.31745 * 14 13 12 30 30 C 1.46957 * 111.00130 * 293.79842 * 11 10 9 31 31 H 0.97003 * 120.00031 * 359.97438 * 1 2 3 32 32 H 1.09006 * 109.47117 * 59.99701 * 9 7 2 33 33 H 1.09000 * 109.47450 * 300.00605 * 9 7 2 34 34 H 1.08993 * 109.46782 * 59.99680 * 10 9 7 35 35 H 1.09000 * 109.46676 * 299.99899 * 10 9 7 36 36 H 1.09002 * 109.48967 * 63.22143 * 12 11 10 37 37 H 1.08999 * 109.50963 * 303.16496 * 12 11 10 38 38 H 1.08998 * 109.48811 * 181.62760 * 13 12 11 39 39 H 1.09000 * 109.50873 * 61.57869 * 13 12 11 40 40 H 1.08998 * 109.67755 * 49.29783 * 17 15 14 41 41 H 1.09000 * 109.70649 * 288.77753 * 17 15 14 42 42 H 1.09000 * 109.60333 * 172.71226 * 18 17 15 43 43 H 1.09008 * 109.60010 * 52.22684 * 18 17 15 44 44 H 1.08998 * 109.29953 * 290.43933 * 19 18 17 45 45 H 1.09000 * 109.30085 * 171.06480 * 19 18 17 46 46 H 1.07996 * 120.04134 * 359.95962 * 22 21 20 47 47 H 1.07995 * 119.96286 * 179.72496 * 23 22 21 48 48 H 1.08002 * 119.92578 * 180.25518 * 24 23 22 49 49 H 1.07995 * 119.96342 * 179.72491 * 25 24 23 50 50 H 1.07999 * 120.03164 * 179.97438 * 26 25 24 51 51 H 1.09002 * 109.48807 * 60.64892 * 29 14 13 52 52 H 1.08997 * 109.48767 * 180.71214 * 29 14 13 53 53 H 1.08999 * 109.48782 * 296.78222 * 30 11 10 54 54 H 1.09002 * 109.48381 * 56.82002 * 30 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6528 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0216 -2.6366 0.0001 11 7 5.4905 -2.6366 0.0001 12 6 6.0172 -3.9877 0.2385 13 6 7.5450 -3.9315 0.3102 14 7 8.0717 -3.3780 -0.9452 15 6 9.5407 -3.3779 -0.9451 16 1 9.9015 -2.9027 -1.8572 17 6 10.0490 -2.5982 0.2700 18 6 11.5572 -2.8406 0.4051 19 6 11.7860 -4.3048 0.7822 20 7 11.0599 -5.1846 -0.1249 21 6 11.4583 -6.5239 -0.1985 22 6 10.9016 -7.4637 0.6591 23 6 11.3006 -8.7840 0.5871 24 6 12.2454 -9.1725 -0.3449 25 6 12.8020 -8.2391 -1.1999 26 6 12.4111 -6.9163 -1.1295 27 6 10.0429 -4.7921 -0.8931 28 8 9.4909 -5.6228 -1.5833 29 6 7.5450 -2.0269 -1.1835 30 6 6.0173 -2.0830 -1.2552 31 1 -0.4850 0.8401 0.0004 32 1 3.8752 -0.6796 0.8895 33 1 3.8746 -0.6808 -0.8904 34 1 3.6579 -3.1505 -0.8896 35 1 3.6586 -3.1501 0.8903 36 1 5.7153 -4.6448 -0.5771 37 1 5.6228 -4.3713 1.1795 38 1 7.9393 -4.9368 0.4581 39 1 7.8472 -3.2963 1.1428 40 1 9.5396 -2.9460 1.1686 41 1 9.8596 -1.5340 0.1293 42 1 11.9631 -2.1947 1.1836 43 1 12.0485 -2.6263 -0.5442 44 1 11.4389 -4.4727 1.8017 45 1 12.8512 -4.5291 0.7260 46 1 10.1607 -7.1617 1.3845 47 1 10.8712 -9.5145 1.2568 48 1 12.5527 -10.2063 -0.4019 49 1 13.5429 -8.5448 -1.9237 50 1 12.8466 -6.1877 -1.7973 51 1 7.8469 -1.3698 -0.3679 52 1 7.9394 -1.6437 -2.1246 53 1 5.7154 -2.7185 -2.0877 54 1 5.6225 -1.0778 -1.4032 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095999727.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:03 Heat of formation + Delta-G solvation = -1.270726 kcal Electronic energy + Delta-G solvation = -32563.729293 eV Core-core repulsion = 28499.745843 eV Total energy + Delta-G solvation = -4063.983450 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 357.216 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.31257 -40.48500 -39.38468 -37.69003 -37.07041 -35.18606 -34.02151 -32.37675 -31.91169 -31.85358 -30.33076 -30.00045 -27.62730 -25.83090 -25.09867 -24.43092 -23.69852 -23.57501 -22.80376 -21.93505 -20.72922 -19.62657 -19.02521 -18.60796 -17.69664 -17.44678 -17.19110 -16.58356 -16.49806 -16.21150 -16.06808 -15.75183 -15.62610 -15.42944 -15.26998 -15.02288 -14.74743 -14.65359 -14.53500 -14.37897 -14.31905 -14.19698 -13.58447 -13.39154 -13.20645 -13.01852 -12.80379 -12.74644 -12.49802 -12.44818 -12.29543 -12.27477 -12.10150 -11.99420 -11.78290 -11.75101 -11.66596 -11.42088 -11.36330 -10.75961 -10.72353 -9.96275 -9.91073 -9.76710 -9.40035 -9.21095 -8.29385 -6.34209 0.26655 0.41311 1.37048 1.39609 1.46384 1.52794 1.82772 2.37516 2.73852 2.82305 2.94798 3.05936 3.48304 3.66669 3.76709 3.87957 3.94882 3.97840 4.01638 4.03431 4.12420 4.21121 4.22575 4.26743 4.36429 4.37075 4.45893 4.48235 4.50366 4.51423 4.61389 4.64325 4.72217 4.75361 4.80187 4.88780 4.90181 4.94160 4.98295 5.03135 5.04453 5.08009 5.23312 5.27307 5.36798 5.46211 5.50239 5.54174 5.57993 5.62255 5.81781 5.90026 6.06127 6.11202 6.16810 6.29738 6.34226 6.73190 7.14367 7.30308 8.87397 Molecular weight = 357.22amu Principal moments of inertia in cm(-1) A = 0.021040 B = 0.002048 C = 0.001944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.475249 B =13670.362402 C =14402.234848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.004 3.996 3 Si 0.955 3.045 4 H -0.265 1.265 5 H -0.284 1.284 6 H -0.244 1.244 7 C -0.535 4.535 8 H 0.028 0.972 9 C 0.004 3.996 10 C 0.083 3.917 11 N -0.539 5.539 12 C 0.059 3.941 13 C 0.072 3.928 14 N -0.537 5.537 15 C 0.082 3.918 16 H 0.122 0.878 17 C -0.156 4.156 18 C -0.121 4.121 19 C 0.108 3.892 20 N -0.563 5.563 21 C 0.116 3.884 22 C -0.127 4.127 23 C -0.118 4.118 24 C -0.120 4.120 25 C -0.116 4.116 26 C -0.124 4.124 27 C 0.522 3.478 28 O -0.567 6.567 29 C 0.070 3.930 30 C 0.051 3.949 31 H 0.267 0.733 32 H 0.025 0.975 33 H 0.020 0.980 34 H 0.012 0.988 35 H 0.061 0.939 36 H 0.020 0.980 37 H 0.083 0.917 38 H 0.063 0.937 39 H 0.060 0.940 40 H 0.072 0.928 41 H 0.093 0.907 42 H 0.114 0.886 43 H 0.082 0.918 44 H 0.074 0.926 45 H 0.093 0.907 46 H 0.118 0.882 47 H 0.144 0.856 48 H 0.150 0.850 49 H 0.149 0.851 50 H 0.126 0.874 51 H 0.060 0.940 52 H 0.098 0.902 53 H 0.024 0.976 54 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 36.726 -10.689 2.292 38.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.193 4.193 3 Si 0.778 3.222 4 H -0.190 1.190 5 H -0.210 1.210 6 H -0.167 1.167 7 C -0.573 4.573 8 H 0.046 0.954 9 C -0.033 4.033 10 C -0.045 4.045 11 N -0.264 5.264 12 C -0.070 4.070 13 C -0.056 4.056 14 N -0.261 5.261 15 C -0.029 4.029 16 H 0.140 0.860 17 C -0.195 4.195 18 C -0.159 4.159 19 C -0.012 4.012 20 N -0.293 5.293 21 C 0.027 3.973 22 C -0.147 4.147 23 C -0.137 4.137 24 C -0.137 4.137 25 C -0.134 4.134 26 C -0.144 4.144 27 C 0.310 3.690 28 O -0.443 6.443 29 C -0.057 4.057 30 C -0.077 4.077 31 H 0.076 0.924 32 H 0.044 0.956 33 H 0.038 0.962 34 H 0.030 0.970 35 H 0.080 0.920 36 H 0.039 0.961 37 H 0.101 0.899 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.091 0.909 41 H 0.112 0.888 42 H 0.132 0.868 43 H 0.100 0.900 44 H 0.092 0.908 45 H 0.112 0.888 46 H 0.136 0.864 47 H 0.162 0.838 48 H 0.168 0.832 49 H 0.166 0.834 50 H 0.144 0.856 51 H 0.078 0.922 52 H 0.116 0.884 53 H 0.042 0.958 54 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 36.262 -10.976 1.931 37.936 hybrid contribution -0.902 0.352 -0.170 0.983 sum 35.360 -10.623 1.760 36.964 Atomic orbital electron populations 1.70076 1.08374 1.28242 1.52493 1.26035 0.95657 1.03683 0.93923 0.85587 0.79568 0.77798 0.79274 1.19042 1.20951 1.16722 1.21410 0.92011 0.93133 1.50783 0.95354 1.19404 0.93226 0.93871 0.96838 1.21812 0.85645 0.98038 0.98997 1.62263 1.07725 1.21692 1.34729 1.22122 0.94946 0.89287 1.00612 1.22030 0.93539 0.99160 0.90911 1.62022 1.05586 1.23312 1.35215 1.21620 0.88201 0.91191 1.01857 0.86041 1.22406 0.97433 1.01961 0.97729 1.21836 0.94984 0.94430 1.04647 1.21766 0.97248 0.89699 0.92522 1.45103 1.33390 1.08278 1.42566 1.17791 0.97277 0.84486 0.97751 1.21435 0.99660 0.93974 0.99588 1.21364 0.97653 0.95261 0.99374 1.21576 0.96314 1.00921 0.94935 1.21383 1.00341 0.92145 0.99543 1.21455 0.97565 0.97600 0.97734 1.20437 0.78927 0.91006 0.78587 1.90732 1.56418 1.53909 1.43290 1.22154 0.92950 0.88146 1.02474 1.22245 0.95291 1.00251 0.89914 0.92447 0.95632 0.96202 0.97000 0.92008 0.96138 0.89872 0.91853 0.92167 0.90938 0.88801 0.86765 0.89981 0.90764 0.88838 0.86438 0.83840 0.83217 0.83360 0.85584 0.92217 0.88358 0.95763 0.89957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.67 13.96 21.45 0.30 -60.37 16 2 C 0.00 0.22 5.47 84.65 0.46 0.69 16 3 Si 0.95 44.68 27.47 68.60 1.88 46.57 16 4 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 5 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 6 H -0.24 -10.58 6.54 99.48 0.65 -9.93 16 7 C -0.53 -31.73 9.66 25.60 0.25 -31.48 16 8 H 0.03 1.85 7.99 -2.91 -0.02 1.83 16 9 C 0.00 0.21 3.97 29.85 0.12 0.33 16 10 C 0.08 3.50 4.90 86.30 0.42 3.93 16 11 N -0.54 -18.80 4.71 -895.73 -4.22 -23.02 16 12 C 0.06 1.83 5.61 86.31 0.48 2.31 16 13 C 0.07 1.86 4.87 86.31 0.42 2.28 16 14 N -0.54 -13.50 4.44 -875.76 -3.89 -17.39 16 15 C 0.08 1.59 2.40 44.02 0.11 1.70 16 16 H 0.12 2.09 8.07 -2.39 -0.02 2.07 16 17 C -0.16 -1.93 4.60 30.73 0.14 -1.79 16 18 C -0.12 -0.85 6.02 30.68 0.18 -0.67 16 19 C 0.11 1.08 6.35 86.50 0.55 1.63 16 20 N -0.56 -10.19 2.85 -635.84 -1.81 -12.00 16 21 C 0.12 2.30 4.01 38.15 0.15 2.46 16 22 C -0.13 -2.44 9.97 22.39 0.22 -2.21 16 23 C -0.12 -1.80 10.04 22.25 0.22 -1.58 16 24 C -0.12 -1.57 10.04 22.29 0.22 -1.34 16 25 C -0.12 -1.61 10.04 22.25 0.22 -1.38 16 26 C -0.12 -2.16 9.97 22.39 0.22 -1.94 16 27 C 0.52 12.46 5.81 87.71 0.51 12.97 16 28 O -0.57 -19.32 16.38 -3.05 -0.05 -19.37 16 29 C 0.07 1.66 5.30 86.31 0.46 2.12 16 30 C 0.05 1.62 5.41 86.31 0.47 2.09 16 31 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 32 H 0.03 1.23 7.20 -2.38 -0.02 1.21 16 33 H 0.02 0.92 5.92 -2.39 -0.01 0.91 16 34 H 0.01 0.53 8.12 -2.39 -0.02 0.51 16 35 H 0.06 2.64 8.03 -2.39 -0.02 2.62 16 36 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.08 2.44 8.07 -2.39 -0.02 2.42 16 38 H 0.06 1.74 7.09 -2.39 -0.02 1.72 16 39 H 0.06 1.41 6.20 -2.39 -0.01 1.39 16 40 H 0.07 1.04 5.85 -2.39 -0.01 1.03 16 41 H 0.09 1.00 7.23 -2.39 -0.02 0.98 16 42 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 43 H 0.08 0.51 8.12 -2.38 -0.02 0.49 16 44 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 45 H 0.09 0.66 8.08 -2.39 -0.02 0.64 16 46 H 0.12 2.22 8.06 -2.91 -0.02 2.20 16 47 H 0.14 1.56 8.06 -2.91 -0.02 1.53 16 48 H 0.15 1.12 8.06 -2.91 -0.02 1.09 16 49 H 0.15 1.27 8.06 -2.91 -0.02 1.25 16 50 H 0.13 1.95 8.06 -2.91 -0.02 1.93 16 51 H 0.06 1.28 6.93 -2.39 -0.02 1.26 16 52 H 0.10 1.93 8.09 -2.39 -0.02 1.91 16 53 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 54 H 0.08 2.68 6.34 -2.39 -0.02 2.66 16 Total: -1.00 -78.59 413.50 -1.13 -79.71 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: 0.81 Total: 15.79 kcal Atomic # 6 Polarization: -15.76 SS G_CDS: 5.84 Total: -9.92 kcal Atomic # 7 Polarization: -103.15 SS G_CDS: -9.62 Total: -112.77 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: -0.05 Total: -19.37 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 1.88 Total: 46.57 kcal Total: -78.59 -1.13 -79.71 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095999727.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.442 kcal (2) G-P(sol) polarization free energy of solvation -78.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds