Wall clock time and date at job start Tue Mar 31 2020 05:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86795 * 119.99869 * 2 1 4 4 H 1.48506 * 109.47138 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47195 * 299.99709 * 3 2 1 6 6 H 1.48500 * 109.47500 * 59.99734 * 3 2 1 7 7 C 1.37866 * 119.99855 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99849 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00415 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47364 * 180.02562 * 9 7 2 11 11 N 1.46905 * 109.46871 * 180.02562 * 10 9 7 12 12 C 1.46959 * 110.99483 * 293.79020 * 11 10 9 13 13 C 1.53054 * 109.36071 * 176.81595 * 12 11 10 14 14 N 1.46954 * 109.36522 * 58.40449 * 13 12 11 15 15 C 1.46901 * 111.00137 * 176.81072 * 14 13 12 16 16 H 1.09003 * 109.40199 * 177.30033 * 15 14 13 17 17 C 1.53072 * 109.40264 * 57.47444 * 15 14 13 18 18 C 1.53336 * 108.42874 * 190.97147 * 17 15 14 19 19 C 1.52922 * 108.67322 * 67.53283 * 18 17 15 20 20 N 1.45751 * 110.48391 * 309.24378 * 19 18 17 21 21 C 1.39926 * 117.94502 * 199.07527 * 20 19 18 22 22 C 1.38873 * 120.07113 * 271.29338 * 21 20 19 23 23 C 1.38113 * 119.93057 * 179.74067 * 22 21 20 24 24 C 1.38284 * 120.06830 * 0.53596 * 23 22 21 25 25 C 1.38281 * 120.14123 * 359.71862 * 24 23 22 26 26 C 1.38107 * 120.07159 * 0.02562 * 25 24 23 27 27 C 1.33346 * 124.11085 * 19.08431 * 20 19 18 28 28 O 1.21288 * 118.24852 * 177.77395 * 27 20 19 29 29 C 1.46956 * 110.88200 * 300.67952 * 14 13 12 30 30 C 1.46959 * 110.99566 * 170.00155 * 11 10 9 31 31 H 0.97005 * 119.99686 * 0.02562 * 1 2 3 32 32 H 1.09005 * 109.47307 * 59.99820 * 9 7 2 33 33 H 1.09005 * 109.47321 * 300.00126 * 9 7 2 34 34 H 1.09002 * 109.46876 * 299.99381 * 10 9 7 35 35 H 1.08997 * 109.47715 * 60.00048 * 10 9 7 36 36 H 1.08994 * 109.49180 * 296.78263 * 12 11 10 37 37 H 1.08997 * 109.48578 * 56.85578 * 12 11 10 38 38 H 1.09002 * 109.49141 * 298.43460 * 13 12 11 39 39 H 1.08994 * 109.49047 * 178.37119 * 13 12 11 40 40 H 1.09003 * 109.67463 * 310.71203 * 17 15 14 41 41 H 1.09004 * 109.67463 * 71.19664 * 17 15 14 42 42 H 1.09001 * 109.60420 * 187.28567 * 18 17 15 43 43 H 1.08995 * 109.60531 * 307.61136 * 18 17 15 44 44 H 1.08997 * 109.30284 * 69.56224 * 19 18 17 45 45 H 1.09001 * 109.29821 * 189.14318 * 19 18 17 46 46 H 1.07999 * 120.03697 * 359.97438 * 22 21 20 47 47 H 1.08003 * 119.96773 * 180.25247 * 23 22 21 48 48 H 1.08001 * 119.92695 * 179.73955 * 24 23 22 49 49 H 1.08007 * 119.96439 * 180.02562 * 25 24 23 50 50 H 1.08003 * 120.03928 * 179.97438 * 26 25 24 51 51 H 1.09002 * 109.48957 * 299.35498 * 29 14 13 52 52 H 1.08998 * 109.50949 * 179.30143 * 29 14 13 53 53 H 1.09004 * 109.48807 * 303.14507 * 30 11 10 54 54 H 1.08995 * 109.49781 * 63.21830 * 30 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0018 11 7 1.5108 -4.9342 0.0012 12 6 0.7668 -5.1132 1.2558 13 6 -0.0457 -6.4083 1.1836 14 7 0.8613 -7.5400 0.9465 15 6 0.1268 -8.8122 0.9459 16 1 0.8146 -9.6273 0.7208 17 6 -0.9715 -8.7649 -0.1192 18 6 -1.8923 -9.9747 0.0799 19 6 -2.6475 -9.8034 1.3986 20 7 -1.7203 -9.5007 2.4817 21 6 -2.1553 -9.7103 3.7950 22 6 -2.8122 -8.6968 4.4806 23 6 -3.2450 -8.9086 5.7749 24 6 -3.0151 -10.1245 6.3921 25 6 -2.3567 -11.1339 5.7140 26 6 -1.9260 -10.9302 4.4177 27 6 -0.4837 -9.0363 2.2996 28 8 0.1839 -8.7815 3.2796 29 6 1.6054 -7.3610 -0.3081 30 6 2.4179 -6.0659 -0.2358 31 1 -0.4850 0.8401 -0.0004 32 1 0.6247 -2.5571 -0.8897 33 1 0.6240 -2.5567 0.8903 34 1 2.8726 -3.6047 -0.8878 35 1 2.8713 -3.6040 0.8922 36 1 1.4671 -5.1694 2.0891 37 1 0.0931 -4.2691 1.4027 38 1 -0.7649 -6.3414 0.3672 39 1 -0.5757 -6.5580 2.1241 40 1 -1.5462 -7.8447 -0.0131 41 1 -0.5222 -8.8043 -1.1116 42 1 -2.6036 -10.0324 -0.7440 43 1 -1.2961 -10.8865 0.1128 44 1 -3.3647 -8.9886 1.2999 45 1 -3.1798 -10.7257 1.6313 46 1 -2.9877 -7.7453 4.0008 47 1 -3.7595 -8.1222 6.3072 48 1 -3.3509 -10.2863 7.4058 49 1 -2.1790 -12.0826 6.1987 50 1 -1.4114 -11.7188 3.8887 51 1 0.9050 -7.3048 -1.1415 52 1 2.2790 -8.2051 -0.4554 53 1 2.9479 -5.9162 -1.1765 54 1 3.1370 -6.1329 0.5805 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095999728.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:06 Heat of formation + Delta-G solvation = -3.973579 kcal Electronic energy + Delta-G solvation = -32628.237896 eV Core-core repulsion = 28564.137241 eV Total energy + Delta-G solvation = -4064.100655 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 357.216 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.31962 -40.47949 -39.37845 -37.68180 -37.05709 -35.23994 -33.98943 -32.11429 -31.91433 -31.79081 -30.32088 -29.87398 -27.51423 -25.92563 -24.87139 -24.85446 -23.70381 -23.55887 -22.80509 -22.05291 -20.74910 -19.61363 -18.69757 -18.55858 -17.69180 -17.43807 -17.19749 -16.59583 -16.56477 -16.27947 -16.04400 -15.73398 -15.69590 -15.47635 -15.14087 -15.01157 -14.71830 -14.64579 -14.38819 -14.34264 -14.18526 -14.14636 -13.59085 -13.26847 -13.10119 -13.02565 -12.89124 -12.68377 -12.52389 -12.47848 -12.39117 -12.28780 -12.18888 -12.08243 -11.90607 -11.78800 -11.73423 -11.28247 -11.19224 -10.73591 -10.55626 -9.97215 -9.92043 -9.77432 -9.38138 -9.19921 -8.21450 -6.32622 0.25783 0.40365 1.38966 1.39445 1.46106 1.52891 1.83524 2.39061 2.73046 2.81274 3.00676 3.11897 3.47969 3.66736 3.76549 3.87809 3.94246 3.96849 4.01103 4.04642 4.12429 4.19697 4.20877 4.27922 4.36747 4.39232 4.46544 4.47487 4.50259 4.57846 4.60664 4.65267 4.72397 4.75035 4.82557 4.88919 4.91475 4.94577 5.02803 5.03493 5.04735 5.10097 5.24590 5.36056 5.43209 5.49618 5.53122 5.57456 5.62889 5.73019 5.82239 5.91016 6.05185 6.09069 6.25233 6.29529 6.34239 6.84119 7.13858 7.36355 8.90949 Molecular weight = 357.22amu Principal moments of inertia in cm(-1) A = 0.013006 B = 0.002222 C = 0.002030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.253483 B =12596.874981 C =13790.360289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.001 3.999 3 Si 0.967 3.033 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.279 1.279 7 C -0.544 4.544 8 H 0.059 0.941 9 C 0.038 3.962 10 C 0.079 3.921 11 N -0.543 5.543 12 C 0.065 3.935 13 C 0.076 3.924 14 N -0.534 5.534 15 C 0.083 3.917 16 H 0.130 0.870 17 C -0.157 4.157 18 C -0.119 4.119 19 C 0.107 3.893 20 N -0.564 5.564 21 C 0.116 3.884 22 C -0.131 4.131 23 C -0.119 4.119 24 C -0.119 4.119 25 C -0.114 4.114 26 C -0.121 4.121 27 C 0.519 3.481 28 O -0.567 6.567 29 C 0.068 3.932 30 C 0.053 3.947 31 H 0.264 0.736 32 H -0.004 1.004 33 H -0.010 1.010 34 H 0.071 0.929 35 H 0.013 0.987 36 H 0.018 0.982 37 H 0.061 0.939 38 H 0.054 0.946 39 H 0.056 0.944 40 H 0.064 0.936 41 H 0.098 0.902 42 H 0.114 0.886 43 H 0.087 0.913 44 H 0.069 0.931 45 H 0.096 0.904 46 H 0.111 0.889 47 H 0.141 0.859 48 H 0.151 0.849 49 H 0.152 0.848 50 H 0.129 0.871 51 H 0.057 0.943 52 H 0.107 0.893 53 H 0.094 0.906 54 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.204 -29.772 3.347 31.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.791 3.209 4 H -0.186 1.186 5 H -0.201 1.201 6 H -0.205 1.205 7 C -0.582 4.582 8 H 0.077 0.923 9 C 0.001 3.999 10 C -0.048 4.048 11 N -0.268 5.268 12 C -0.064 4.064 13 C -0.052 4.052 14 N -0.259 5.259 15 C -0.028 4.028 16 H 0.147 0.853 17 C -0.197 4.197 18 C -0.157 4.157 19 C -0.013 4.013 20 N -0.294 5.294 21 C 0.027 3.973 22 C -0.150 4.150 23 C -0.138 4.138 24 C -0.136 4.136 25 C -0.132 4.132 26 C -0.141 4.141 27 C 0.308 3.692 28 O -0.444 6.444 29 C -0.060 4.060 30 C -0.075 4.075 31 H 0.073 0.927 32 H 0.014 0.986 33 H 0.008 0.992 34 H 0.089 0.911 35 H 0.031 0.969 36 H 0.037 0.963 37 H 0.079 0.921 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.082 0.918 41 H 0.116 0.884 42 H 0.132 0.868 43 H 0.105 0.895 44 H 0.087 0.913 45 H 0.114 0.886 46 H 0.130 0.870 47 H 0.159 0.841 48 H 0.169 0.831 49 H 0.170 0.830 50 H 0.147 0.853 51 H 0.075 0.925 52 H 0.125 0.875 53 H 0.113 0.887 54 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -7.953 -29.523 3.799 30.811 hybrid contribution 0.227 1.547 0.308 1.593 sum -7.726 -27.977 4.106 29.313 Atomic orbital electron populations 1.70121 1.07790 1.27702 1.51507 1.25969 0.95789 1.03340 0.94628 0.85371 0.79023 0.78632 0.77835 1.18624 1.20084 1.20457 1.21645 0.93505 0.92280 1.50785 0.92254 1.18901 0.94147 0.91910 0.94957 1.21977 0.95408 0.88386 0.99029 1.62243 1.28139 1.02622 1.33798 1.21988 0.96945 0.97111 0.90346 1.21942 0.93966 0.89361 0.99955 1.62055 1.27017 1.00625 1.36191 1.21662 0.96146 0.94330 0.90645 0.85252 1.22412 0.97284 1.00055 0.99900 1.21823 0.99430 0.98062 0.96413 1.21782 0.91377 1.02416 0.85754 1.45116 1.13657 1.65046 1.05618 1.17798 0.99145 0.94521 0.85851 1.21435 0.99302 0.98237 0.96075 1.21349 0.99803 0.98602 0.94016 1.21575 0.98143 0.92851 1.01069 1.21402 0.97590 1.00568 0.93677 1.21453 0.99945 0.96438 0.96230 1.20514 0.80781 0.75925 0.91959 1.90729 1.60643 1.50681 1.42345 1.22214 0.97071 0.97354 0.89317 1.22277 0.94061 0.89948 1.01249 0.92749 0.98595 0.99215 0.91085 0.96884 0.96329 0.92087 0.92816 0.92536 0.91753 0.88383 0.86821 0.89461 0.91318 0.88586 0.87042 0.84095 0.83087 0.83039 0.85258 0.92470 0.87513 0.88735 0.95457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.91 13.29 21.44 0.28 -57.62 16 2 C 0.00 0.04 5.46 84.65 0.46 0.50 16 3 Si 0.97 45.27 29.54 68.60 2.03 47.30 16 4 H -0.26 -11.72 7.11 99.48 0.71 -11.02 16 5 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 6 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 7 C -0.54 -31.96 9.11 25.60 0.23 -31.73 16 8 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 9 C 0.04 2.12 4.91 29.85 0.15 2.27 16 10 C 0.08 3.55 4.90 86.30 0.42 3.98 16 11 N -0.54 -20.83 4.71 -895.69 -4.22 -25.05 16 12 C 0.06 2.53 5.41 86.31 0.47 3.00 16 13 C 0.08 2.42 4.89 86.31 0.42 2.85 16 14 N -0.53 -14.62 4.44 -875.69 -3.89 -18.51 16 15 C 0.08 1.75 2.42 44.03 0.11 1.86 16 16 H 0.13 2.24 8.09 -2.39 -0.02 2.23 16 17 C -0.16 -2.30 4.59 30.73 0.14 -2.16 16 18 C -0.12 -1.06 6.02 30.68 0.18 -0.87 16 19 C 0.11 1.36 6.35 86.49 0.55 1.90 16 20 N -0.56 -11.76 2.85 -635.82 -1.81 -13.57 16 21 C 0.12 2.62 4.01 38.15 0.15 2.77 16 22 C -0.13 -3.00 9.97 22.39 0.22 -2.77 16 23 C -0.12 -2.20 10.04 22.25 0.22 -1.98 16 24 C -0.12 -1.81 10.04 22.29 0.22 -1.58 16 25 C -0.11 -1.76 10.04 22.25 0.22 -1.54 16 26 C -0.12 -2.32 9.97 22.39 0.22 -2.10 16 27 C 0.52 13.71 5.77 87.72 0.51 14.21 16 28 O -0.57 -20.75 16.31 -3.05 -0.05 -20.80 16 29 C 0.07 1.58 5.29 86.31 0.46 2.03 16 30 C 0.05 1.57 5.61 86.31 0.48 2.05 16 31 H 0.26 15.30 8.31 -92.70 -0.77 14.53 16 32 H 0.00 -0.26 8.14 -2.38 -0.02 -0.28 16 33 H -0.01 -0.63 6.49 -2.38 -0.02 -0.64 16 34 H 0.07 3.02 8.03 -2.39 -0.02 3.00 16 35 H 0.01 0.59 8.12 -2.39 -0.02 0.58 16 36 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.06 2.69 6.34 -2.39 -0.02 2.68 16 38 H 0.05 1.63 6.21 -2.39 -0.01 1.62 16 39 H 0.06 1.95 7.00 -2.39 -0.02 1.93 16 40 H 0.06 1.19 5.88 -2.39 -0.01 1.18 16 41 H 0.10 1.17 7.21 -2.38 -0.02 1.15 16 42 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 43 H 0.09 0.60 8.12 -2.39 -0.02 0.58 16 44 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.10 0.88 8.08 -2.39 -0.02 0.86 16 46 H 0.11 2.67 8.06 -2.91 -0.02 2.65 16 47 H 0.14 2.04 8.06 -2.91 -0.02 2.02 16 48 H 0.15 1.41 8.06 -2.91 -0.02 1.39 16 49 H 0.15 1.45 8.06 -2.91 -0.02 1.42 16 50 H 0.13 2.14 8.06 -2.91 -0.02 2.12 16 51 H 0.06 1.24 6.90 -2.39 -0.02 1.22 16 52 H 0.11 1.88 8.10 -2.39 -0.02 1.86 16 53 H 0.09 2.49 8.07 -2.38 -0.02 2.47 16 54 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -78.58 416.93 -0.94 -79.52 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: 0.87 Total: 16.06 kcal Atomic # 6 Polarization: -13.16 SS G_CDS: 5.85 Total: -7.31 kcal Atomic # 7 Polarization: -105.12 SS G_CDS: -9.63 Total: -114.75 kcal Atomic # 8 Polarization: -20.75 SS G_CDS: -0.05 Total: -20.80 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -78.58 -0.94 -79.52 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095999728.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.542 kcal (2) G-P(sol) polarization free energy of solvation -78.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds