Wall clock time and date at job start Tue Mar 31 2020 05:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47180 * 111.00125 * 2 1 4 4 C 1.52980 * 108.71017 * 54.18695 * 3 2 1 5 5 N 1.46013 * 110.02465 * 50.21601 * 4 3 2 6 6 C 1.37095 * 118.51260 * 161.97962 * 5 4 3 7 7 H 1.08005 * 119.99852 * 201.32955 * 6 5 4 8 8 C 1.38952 * 120.00451 * 21.33055 * 6 5 4 9 9 N 1.31407 * 119.99793 * 16.38992 * 8 6 5 10 10 Si 1.86800 * 120.00198 * 196.38271 * 8 6 5 11 11 H 1.48507 * 109.46834 * 94.97265 * 10 8 6 12 12 H 1.48495 * 109.47256 * 214.97291 * 10 8 6 13 13 H 1.48507 * 109.46983 * 334.97816 * 10 8 6 14 14 C 1.33687 * 122.96514 * 342.00052 * 5 4 3 15 15 O 1.21294 * 118.61252 * 181.66760 * 14 5 4 16 16 C 1.46993 * 111.00026 * 122.85940 * 2 1 3 17 17 C 1.53115 * 109.24064 * 167.03739 * 16 2 1 18 18 C 1.53181 * 109.31528 * 178.99478 * 17 16 2 19 19 N 1.46927 * 108.78298 * 54.73247 * 18 17 16 20 20 S 1.65603 * 120.64600 * 126.40984 * 19 18 17 21 21 O 1.42093 * 104.27530 * 26.05676 * 20 19 18 22 22 O 1.42099 * 104.27151 * 153.91004 * 20 19 18 23 23 C 1.81398 * 104.45287 * 269.98197 * 20 19 18 24 24 C 1.53000 * 117.49670 * 253.62507 * 23 20 19 25 25 C 1.53000 * 60.00068 * 252.51028 * 24 23 20 26 26 C 1.46916 * 118.70420 * 306.39483 * 19 18 17 27 27 C 1.53113 * 109.25793 * 47.37640 * 16 2 1 28 28 H 1.09000 * 109.46999 * 56.04292 * 1 2 3 29 29 H 1.09003 * 109.47077 * 296.05043 * 1 2 3 30 30 H 1.08999 * 109.47477 * 176.04326 * 1 2 3 31 31 H 1.08999 * 109.59338 * 173.95923 * 3 2 1 32 32 H 1.08998 * 109.59520 * 294.42068 * 3 2 1 33 33 H 1.09004 * 109.37695 * 170.38342 * 4 3 2 34 34 H 1.08998 * 109.38522 * 290.04051 * 4 3 2 35 35 H 0.96996 * 119.99835 * 180.02562 * 9 8 6 36 36 H 1.08996 * 109.49499 * 298.93971 * 17 16 2 37 37 H 1.08990 * 109.49959 * 59.04293 * 17 16 2 38 38 H 1.08996 * 109.58519 * 294.94147 * 18 17 16 39 39 H 1.09005 * 109.70202 * 174.59458 * 18 17 16 40 40 H 1.09005 * 115.54684 * 39.32830 * 23 20 19 41 41 H 1.08997 * 117.49951 * 359.97438 * 24 23 20 42 42 H 1.08999 * 117.49843 * 145.02054 * 24 23 20 43 43 H 1.09002 * 117.49805 * 252.51886 * 25 24 23 44 44 H 1.08994 * 117.49937 * 107.48904 * 25 24 23 45 45 H 1.08995 * 109.58850 * 293.79477 * 26 19 18 46 46 H 1.09005 * 109.70022 * 173.44855 * 26 19 18 47 47 H 1.09007 * 109.49301 * 300.93292 * 27 16 2 48 48 H 1.08999 * 109.49487 * 60.99030 * 27 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9965 1.3740 0.0000 4 6 1.3808 2.1360 1.1750 5 7 1.5259 1.3615 2.4043 6 6 1.3867 2.0078 3.6053 7 1 1.8120 1.5801 4.5012 8 6 0.6984 3.2131 3.6700 9 7 -0.0850 3.5764 2.6795 10 14 0.8865 4.3170 5.1652 11 1 1.9338 5.3359 4.8996 12 1 -0.4044 4.9955 5.4451 13 1 1.2798 3.4973 6.3393 14 6 1.7888 0.0507 2.4114 15 8 1.8629 -0.5210 3.4786 16 6 1.9958 -0.7446 1.1527 17 6 3.4918 -0.9986 0.9484 18 6 4.0479 -1.7526 2.1603 19 7 3.2532 -2.9714 2.3646 20 16 3.9885 -4.4521 2.4616 21 8 5.3004 -4.1622 2.9240 22 8 3.0945 -5.2369 3.2388 23 6 4.0343 -5.0479 0.7489 24 6 3.0640 -6.1664 0.3639 25 6 4.5576 -6.4652 0.5077 26 6 1.7937 -2.8508 2.4816 27 6 1.2630 -2.0841 1.2663 28 1 -0.3633 0.5740 -0.8524 29 1 -0.3633 0.4513 0.9233 30 1 -0.3634 -1.0252 -0.0709 31 1 3.0808 1.3493 0.1081 32 1 1.7312 1.8674 -0.9350 33 1 1.8871 3.0945 1.2896 34 1 0.3226 2.3091 0.9793 35 1 -0.5652 4.4180 2.7245 36 1 3.6398 -1.5963 0.0490 37 1 4.0114 -0.0464 0.8426 38 1 3.9816 -1.1204 3.0458 39 1 5.0889 -2.0210 1.9802 40 1 4.2581 -4.2935 -0.0054 41 1 2.3985 -6.5446 1.1398 42 1 2.6492 -6.1481 -0.6439 43 1 5.1255 -6.6433 -0.4055 44 1 4.8744 -7.0396 1.3782 45 1 1.5437 -2.3085 3.3934 46 1 1.3443 -3.8434 2.5121 47 1 0.1945 -1.9051 1.3873 48 1 1.4336 -2.6699 0.3631 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096230116.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:57 Heat of formation + Delta-G solvation = -26.958922 kcal Electronic energy + Delta-G solvation = -33052.855647 eV Core-core repulsion = 28851.536035 eV Total energy + Delta-G solvation = -4201.319612 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 357.156 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.70682 -37.38467 -37.21335 -36.85026 -36.32552 -35.82869 -34.42733 -31.72819 -31.10457 -30.61987 -28.43556 -26.08241 -25.33324 -23.77639 -23.15072 -22.89539 -22.53703 -21.50415 -21.02052 -18.83070 -18.13369 -17.54734 -16.93542 -16.73614 -16.21567 -15.87777 -15.35546 -15.03283 -14.93276 -14.70571 -14.52523 -14.13946 -13.87645 -13.85147 -13.58893 -13.05747 -12.69300 -12.55943 -12.47237 -12.22479 -12.11271 -11.96993 -11.88332 -11.82205 -11.70238 -11.49316 -11.33144 -11.32871 -11.29476 -11.04949 -10.97001 -10.77852 -10.77373 -10.56011 -10.46244 -10.31387 -10.24292 -10.03546 -9.12530 -8.96813 -8.40276 -7.74981 -7.46628 -6.34446 -3.96510 0.36667 2.67184 3.09886 3.10682 3.21382 3.27071 3.78132 3.88687 4.00006 4.16292 4.24125 4.35527 4.57355 4.69472 4.74757 4.88908 4.96128 5.10945 5.16442 5.30966 5.35198 5.43107 5.49046 5.53726 5.63812 5.64863 5.71250 5.78394 5.79492 5.84168 5.97006 6.01427 6.05469 6.14143 6.22828 6.27148 6.38779 6.51219 6.57148 6.68400 6.86858 6.91119 7.15171 7.32860 7.39526 7.52070 8.10611 8.39712 9.13262 9.39400 9.90034 10.62167 Molecular weight = 357.16amu Principal moments of inertia in cm(-1) A = 0.018007 B = 0.003547 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.562823 B = 7892.747724 C = 8683.672380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.527 5.527 3 C 0.023 3.977 4 C 0.099 3.901 5 N -0.432 5.432 6 C -0.310 4.310 7 H 0.102 0.898 8 C 0.033 3.967 9 N -0.881 5.881 10 Si 0.924 3.076 11 H -0.279 1.279 12 H -0.284 1.284 13 H -0.268 1.268 14 C 0.425 3.575 15 O -0.579 6.579 16 C 0.107 3.893 17 C -0.109 4.109 18 C 0.123 3.877 19 N -0.979 5.979 20 S 2.636 3.364 21 O -0.957 6.957 22 O -0.955 6.955 23 C -0.688 4.688 24 C -0.125 4.125 25 C -0.132 4.132 26 C 0.108 3.892 27 C -0.107 4.107 28 H 0.064 0.936 29 H 0.046 0.954 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.065 0.935 34 H 0.092 0.908 35 H 0.267 0.733 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.091 0.909 39 H 0.083 0.917 40 H 0.157 0.843 41 H 0.116 0.884 42 H 0.110 0.890 43 H 0.111 0.889 44 H 0.103 0.897 45 H 0.125 0.875 46 H 0.075 0.925 47 H 0.075 0.925 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.635 -11.963 -10.568 16.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.251 5.251 3 C -0.105 4.105 4 C -0.026 4.026 5 N -0.150 5.150 6 C -0.438 4.438 7 H 0.120 0.880 8 C -0.171 4.171 9 N -0.520 5.520 10 Si 0.751 3.249 11 H -0.205 1.205 12 H -0.210 1.210 13 H -0.193 1.193 14 C 0.212 3.788 15 O -0.464 6.464 16 C 0.014 3.986 17 C -0.149 4.149 18 C -0.002 4.002 19 N -0.817 5.817 20 S 2.727 3.273 21 O -0.947 6.947 22 O -0.945 6.945 23 C -0.794 4.794 24 C -0.162 4.162 25 C -0.171 4.171 26 C -0.016 4.016 27 C -0.147 4.147 28 H 0.083 0.917 29 H 0.065 0.935 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.101 0.899 33 H 0.084 0.916 34 H 0.110 0.890 35 H 0.077 0.923 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.109 0.891 39 H 0.101 0.899 40 H 0.175 0.825 41 H 0.134 0.866 42 H 0.128 0.872 43 H 0.130 0.870 44 H 0.122 0.878 45 H 0.143 0.857 46 H 0.093 0.907 47 H 0.094 0.906 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.008 -12.694 -9.768 16.782 hybrid contribution -0.429 1.634 0.277 1.712 sum 4.580 -11.060 -9.491 15.277 Atomic orbital electron populations 1.22495 0.87593 1.01657 1.01768 1.62769 1.08292 1.13760 1.40236 1.22816 1.00009 0.88614 0.99096 1.21973 1.03155 0.94336 0.83142 1.43261 1.59693 1.05602 1.06401 1.19745 1.33186 1.03035 0.87835 0.88023 1.25304 0.94614 0.98561 0.98577 1.69966 1.26190 1.23104 1.32733 0.85929 0.77602 0.79832 0.81507 1.20460 1.21007 1.19286 1.20161 0.85071 0.82712 0.90887 1.90363 1.57023 1.67184 1.31789 1.21079 0.95707 0.93972 0.87833 1.21857 0.93910 1.00837 0.98286 1.21467 0.93161 0.86142 0.99460 1.57324 1.15851 1.20693 1.87783 1.04173 0.73796 0.73368 0.76000 1.93570 1.39627 1.83319 1.78195 1.93569 1.65306 1.70364 1.65290 1.32845 1.16418 1.02264 1.27911 1.22796 0.92611 0.96299 1.04543 1.22715 0.97911 0.91820 1.04659 1.22008 0.77317 1.00502 1.01820 1.21861 0.99822 0.94316 0.98720 0.91701 0.93537 0.91570 0.90906 0.89873 0.91613 0.88983 0.92264 0.90887 0.90761 0.89131 0.89917 0.82505 0.86571 0.87171 0.87036 0.87822 0.85722 0.90683 0.90648 0.91244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.21 8.01 60.07 0.48 0.69 16 2 N -0.53 -8.47 4.89 -228.29 -1.12 -9.58 16 3 C 0.02 0.38 5.96 -3.68 -0.02 0.36 16 4 C 0.10 2.07 3.98 -4.32 -0.02 2.05 16 5 N -0.43 -10.32 2.78 -115.63 -0.32 -10.65 16 6 C -0.31 -8.28 9.13 -14.93 -0.14 -8.42 16 7 H 0.10 2.89 7.25 -52.48 -0.38 2.51 16 8 C 0.03 0.83 5.04 -17.47 -0.09 0.75 16 9 N -0.88 -22.47 10.57 55.50 0.59 -21.89 16 10 Si 0.92 20.37 29.58 -169.99 -5.03 15.34 16 11 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 12 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 13 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 14 C 0.42 9.45 5.25 -11.65 -0.06 9.39 16 15 O -0.58 -14.36 10.92 5.55 0.06 -14.30 16 16 C 0.11 1.85 0.44 -132.77 -0.06 1.79 16 17 C -0.11 -1.64 4.91 -26.58 -0.13 -1.77 16 18 C 0.12 1.97 5.80 -3.72 -0.02 1.95 16 19 N -0.98 -15.17 3.22 -113.54 -0.37 -15.53 16 20 S 2.64 37.47 5.78 -107.50 -0.62 36.85 16 21 O -0.96 -16.26 16.72 -57.54 -0.96 -17.22 16 22 O -0.95 -15.73 16.03 -57.54 -0.92 -16.65 16 23 C -0.69 -6.89 6.60 -26.73 -0.18 -7.07 16 24 C -0.12 -1.05 10.17 -26.73 -0.27 -1.32 16 25 C -0.13 -1.09 10.30 -26.73 -0.28 -1.36 16 26 C 0.11 1.77 5.77 -3.72 -0.02 1.75 16 27 C -0.11 -1.66 4.22 -26.58 -0.11 -1.77 16 28 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.05 0.91 5.98 -51.93 -0.31 0.60 16 30 H 0.07 0.93 6.23 -51.93 -0.32 0.60 16 31 H 0.07 1.15 6.18 -51.93 -0.32 0.83 16 32 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.07 1.46 7.63 -51.93 -0.40 1.07 16 34 H 0.09 2.09 5.62 -51.93 -0.29 1.80 16 35 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.07 1.12 6.40 -51.93 -0.33 0.78 16 38 H 0.09 1.74 6.47 -51.93 -0.34 1.40 16 39 H 0.08 1.15 7.10 -51.93 -0.37 0.78 16 40 H 0.16 1.38 8.14 -51.93 -0.42 0.96 16 41 H 0.12 1.00 7.68 -51.93 -0.40 0.60 16 42 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 45 H 0.13 2.52 5.21 -51.93 -0.27 2.25 16 46 H 0.07 1.08 7.11 -51.93 -0.37 0.71 16 47 H 0.08 1.19 6.27 -51.93 -0.33 0.86 16 48 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 365.96 15.07 5.52 5.52 Total: -1.00 -32.00 365.96 -11.03 -43.03 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -6.94 Total: 8.08 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: -0.91 Total: -2.99 kcal Atomic # 7 Polarization: -56.43 SS G_CDS: -1.22 Total: -57.65 kcal Atomic # 8 Polarization: -46.35 SS G_CDS: -1.82 Total: -48.17 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.03 Total: 15.34 kcal Atomic # 16 Polarization: 37.47 SS G_CDS: -0.62 Total: 36.85 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.00 -11.03 -43.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096230116.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.068 kcal (2) G-P(sol) polarization free energy of solvation -31.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds